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The acute physiological status of white sharks (Carcharodon carcharias) exhibits minimal variation after capture on SMART drumlines.

Tate RD, Cullis BR, Smith SDA, Kelaher BP, Brand CP, Gallen CR, Mandelman JW, Butcher PA.

Conserv Physiol. 2019 Aug 13;7(1):coz042. doi: 10.1093/conphys/coz042. eCollection 2019.


Neural Signatures of Prediction Errors in a Decision-Making Task Are Modulated by Action Execution Failures.

McDougle SD, Butcher PA, Parvin DE, Mushtaq F, Niv Y, Ivry RB, Taylor JA.

Curr Biol. 2019 May 20;29(10):1606-1613.e5. doi: 10.1016/j.cub.2019.04.011. Epub 2019 May 2.


Introgressive hybridisation between two widespread sharks in the east Pacific region.

Pazmiño DA, van Herderden L, Simpfendorfer CA, Junge C, Donnellan SC, Hoyos-Padilla EM, Duffy CAJ, Huveneers C, Gillanders BM, Butcher PA, Maes GE.

Mol Phylogenet Evol. 2019 Jul;136:119-127. doi: 10.1016/j.ympev.2019.04.013. Epub 2019 Apr 11.


An integrated whole genome analysis of Mycobacterium tuberculosis reveals insights into relationship between its genome, transcriptome and methylome.

Gomez-Gonzalez PJ, Andreu N, Phelan JE, de Sessions PF, Glynn JR, Crampin AC, Campino S, Butcher PD, Hibberd ML, Clark TG.

Sci Rep. 2019 Mar 26;9(1):5204. doi: 10.1038/s41598-019-41692-2.


Whale carcass leachate plumes in beach groundwater: A potential shark attractant to the surf?

Tucker JP, Santos IR, Davis KL, Butcher PA.

Mar Pollut Bull. 2019 Mar;140:219-226. doi: 10.1016/j.marpolbul.2019.01.043. Epub 2019 Jan 28.


High-resolution mass spectrometry-based multi-residue method covering relevant steroids, stilbenes and resorcylic acid lactones in a variety of animal-based matrices.

Kaufmann A, Butcher P, Maden K, Walker S, Widmer M.

Anal Chim Acta. 2019 Apr 25;1054:59-73. doi: 10.1016/j.aca.2018.12.012. Epub 2018 Dec 15.


Variable Neural Contributions to Explicit and Implicit Learning During Visuomotor Adaptation.

Liew SL, Thompson T, Ramirez J, Butcher PA, Taylor JA, Celnik PA.

Front Neurosci. 2018 Sep 18;12:610. doi: 10.3389/fnins.2018.00610. eCollection 2018.


Ingestion of inorganic mercury by juvenile black tiger prawns (Penaeus monodon) alters biochemical markers.

Harayashiki CAY, Reichelt-Brushett A, Butcher P, Benkendorff K.

Ecotoxicology. 2018 Nov;27(9):1225-1236. doi: 10.1007/s10646-018-1975-8. Epub 2018 Sep 5.


Diagnostic accuracy of a prototype rapid chlamydia and gonorrhoea recombinase polymerase amplification assay: a multicentre cross-sectional preclinical evaluation.

Harding-Esch EM, Fuller SS, Chow SC, Nori AV, Harrison MA, Parker M, Piepenburg O, Forrest MS, Brooks DG, Patel R, Hay PE, Fearnley N, Pond MJ, Dunbar JK, Butcher PD, Planche T, Lowndes CM, Sadiq ST.

Clin Microbiol Infect. 2019 Mar;25(3):380.e1-380.e7. doi: 10.1016/j.cmi.2018.06.003. Epub 2018 Jun 12.


Analysis of a variety of inorganic and organic additives in food products by ion-pairing liquid chromatography coupled to high-resolution mass spectrometry.

Kaufmann A, Widmer M, Maden K, Butcher P, Walker S.

Anal Bioanal Chem. 2018 Sep;410(22):5629-5640. doi: 10.1007/s00216-018-0904-2. Epub 2018 Mar 5.


Whole-genome sequencing illuminates the evolution and spread of multidrug-resistant tuberculosis in Southwest Nigeria.

Senghore M, Otu J, Witney A, Gehre F, Doughty EL, Kay GL, Butcher P, Salako K, Kehinde A, Onyejepu N, Idigbe E, Corrah T, de Jong B, Pallen MJ, Antonio M.

PLoS One. 2017 Sep 19;12(9):e0184510. doi: 10.1371/journal.pone.0184510. eCollection 2017.


Using In Silico Fragmentation to Improve Routine Residue Screening in Complex Matrices.

Kaufmann A, Butcher P, Maden K, Walker S, Widmer M.

J Am Soc Mass Spectrom. 2017 Dec;28(12):2705-2715. doi: 10.1007/s13361-017-1800-2. Epub 2017 Sep 12.


The cerebellum does more than sensory prediction error-based learning in sensorimotor adaptation tasks.

Butcher PA, Ivry RB, Kuo SH, Rydz D, Krakauer JW, Taylor JA.

J Neurophysiol. 2017 Sep 1;118(3):1622-1636. doi: 10.1152/jn.00451.2017. Epub 2017 Jun 21.


Decomposition of a sensory prediction error signal for visuomotor adaptation.

Butcher PA, Taylor JA.

J Exp Psychol Hum Percept Perform. 2018 Feb;44(2):176-194. doi: 10.1037/xhp0000440. Epub 2017 May 15.


Practical application of in silico fragmentation based residue screening with ion mobility high-resolution mass spectrometry.

Kaufmann A, Butcher P, Maden K, Walker S, Widmer M.

Rapid Commun Mass Spectrom. 2017 Jul 15;31(13):1147-1157. doi: 10.1002/rcm.7890.


Use of whole-genome sequencing to distinguish relapse from reinfection in a completed tuberculosis clinical trial.

Witney AA, Bateson AL, Jindani A, Phillips PP, Coleman D, Stoker NG, Butcher PD, McHugh TD; RIFAQUIN Study Team.

BMC Med. 2017 Mar 29;15(1):71. doi: 10.1186/s12916-017-0834-4.


Sublethal effects of angling and release on golden perch Macquaria ambigua: implications for reproduction and fish health.

Hall KC, Broadhurst MK, Butcher PA, Cameron L, Rowland SJ, Millar RB.

J Fish Biol. 2017 May;90(5):1980-1998. doi: 10.1111/jfb.13282. Epub 2017 Mar 28.


Drug resistant TB: UK multicentre study (DRUMS): Treatment, management and outcomes in London and West Midlands 2008-2014.

Arnold A, Cooke GS, Kon OM, Dedicoat M, Lipman M, Loyse A, Butcher PD, Ster IC, Harrison TS.

J Infect. 2017 Mar;74(3):260-271. doi: 10.1016/j.jinf.2016.12.005. Epub 2016 Dec 18.


Behavioural and biochemical alterations in Penaeus monodon post-larvae diet-exposed to inorganic mercury.

Harayashiki CA, Reichelt-Brushett AJ, Liu L, Butcher P.

Chemosphere. 2016 Dec;164:241-247. doi: 10.1016/j.chemosphere.2016.08.085. Epub 2016 Sep 1.


Geochemistry and mercury contamination in receiving environments of artisanal mining wastes and identified concerns for food safety.

Reichelt-Brushett AJ, Stone J, Howe P, Thomas B, Clark M, Male Y, Nanlohy A, Butcher P.

Environ Res. 2017 Jan;152:407-418. doi: 10.1016/j.envres.2016.07.007. Epub 2016 Jul 26.


XDR-TB transmission in London: Case management and contact tracing investigation assisted by early whole genome sequencing.

Arnold A, Witney AA, Vergnano S, Roche A, Cosgrove CA, Houston A, Gould KA, Hinds J, Riley P, Macallan D, Butcher PD, Harrison TS.

J Infect. 2016 Sep;73(3):210-8. doi: 10.1016/j.jinf.2016.04.037. Epub 2016 Jun 14.


Profiling persistent tubercule bacilli from patient sputa during therapy predicts early drug efficacy.

Honeyborne I, McHugh TD, Kuittinen I, Cichonska A, Evangelopoulos D, Ronacher K, van Helden PD, Gillespie SH, Fernandez-Reyes D, Walzl G, Rousu J, Butcher PD, Waddell SJ.

BMC Med. 2016 Apr 7;14:68. doi: 10.1186/s12916-016-0609-3.


Clinical use of whole genome sequencing for Mycobacterium tuberculosis.

Witney AA, Cosgrove CA, Arnold A, Hinds J, Stoker NG, Butcher PD.

BMC Med. 2016 Mar 23;14:46. doi: 10.1186/s12916-016-0598-2. Review.


Accurate detection of Neisseria gonorrhoeae ciprofloxacin susceptibility directly from genital and extragenital clinical samples: towards genotype-guided antimicrobial therapy.

Pond MJ, Hall CL, Miari VF, Cole M, Laing KG, Jagatia H, Harding-Esch E, Monahan IM, Planche T, Hinds J, Ison CA, Chisholm S, Butcher PD, Sadiq ST.

J Antimicrob Chemother. 2016 Apr;71(4):897-902. doi: 10.1093/jac/dkv432. Epub 2016 Jan 26.


Loving and angry? Happy and sad? Understanding and reporting of mixed emotions in mother-child relationships by 6- to 12-year-olds.

Heubeck BG, Butcher PR, Thorneywork K, Wood J.

Br J Dev Psychol. 2016 Jun;34(2):245-60. doi: 10.1111/bjdp.12128. Epub 2015 Dec 17.


Bioaccumulation of PCBs in liver tissue of dusky Carcharhinus obscurus, sandbar C. plumbeus and white Carcharodon carcharias sharks from south-eastern Australian waters.

Gilbert JM, Baduel C, Li Y, Reichelt-Brushett AJ, Butcher PA, McGrath SP, Peddemors VM, Hearn L, Mueller J, Christidis L.

Mar Pollut Bull. 2015 Dec 30;101(2):908-13. doi: 10.1016/j.marpolbul.2015.10.071. Epub 2015 Nov 6.


Age and growth of mangrove red snapper Lutjanus argentimaculatus at its cool-water-range limits.

Piddocke TP, Butler GL, Butcher PA, Stewart J, Bucher DJ, Christidis L.

J Fish Biol. 2015 May;86(5):1587-600. doi: 10.1111/jfb.12665.


Angling-induced barotrauma in snapper Chrysophrys auratus: are there consequences for reproduction?

Peregrin LS, Butcher PA, Broadhurst MK, Millar RB.

PLoS One. 2015 Mar 17;10(3):e0119158. doi: 10.1371/journal.pone.0119158. eCollection 2015.


Determination of nitrofuran and chloramphenicol residues by high resolution mass spectrometry versus tandem quadrupole mass spectrometry.

Kaufmann A, Butcher P, Maden K, Walker S, Widmer M.

Anal Chim Acta. 2015 Mar 3;862:41-52. doi: 10.1016/j.aca.2014.12.036. Epub 2014 Dec 24.


Clinical application of whole-genome sequencing to inform treatment for multidrug-resistant tuberculosis cases.

Witney AA, Gould KA, Arnold A, Coleman D, Delgado R, Dhillon J, Pond MJ, Pope CF, Planche TD, Stoker NG, Cosgrove CA, Butcher PD, Harrison TS, Hinds J.

J Clin Microbiol. 2015 May;53(5):1473-83. doi: 10.1128/JCM.02993-14. Epub 2015 Feb 11.


Metal and metalloid concentrations in the tissues of dusky Carcharhinus obscurus, sandbar C. plumbeus and white Carcharodon carcharias sharks from south-eastern Australian waters, and the implications for human consumption.

Gilbert JM, Reichelt-Brushett AJ, Butcher PA, McGrath SP, Peddemors VM, Bowling AC, Christidis L.

Mar Pollut Bull. 2015 Mar 15;92(1-2):186-194. doi: 10.1016/j.marpolbul.2014.12.037. Epub 2015 Feb 2.


Performance evaluation of automated urine microscopy as a rapid, non-invasive approach for the diagnosis of non-gonococcal urethritis.

Pond MJ, Nori AV, Patel S, Laing K, Ajayi M, Copas AJ, Butcher PD, Hay P, Sadiq ST.

Sex Transm Infect. 2015 May;91(3):165-70. doi: 10.1136/sextrans-2014-051761. Epub 2015 Jan 22.


Reliability of veterinary drug residue confirmation: high resolution mass spectrometry versus tandem mass spectrometry.

Kaufmann A, Butcher P, Maden K, Walker S, Widmer M.

Anal Chim Acta. 2015 Jan 26;856:54-67. doi: 10.1016/j.aca.2014.11.034. Epub 2014 Nov 29.


High-dose rifapentine with moxifloxacin for pulmonary tuberculosis.

Jindani A, Harrison TS, Nunn AJ, Phillips PP, Churchyard GJ, Charalambous S, Hatherill M, Geldenhuys H, McIlleron HM, Zvada SP, Mungofa S, Shah NA, Zizhou S, Magweta L, Shepherd J, Nyirenda S, van Dijk JH, Clouting HE, Coleman D, Bateson AL, McHugh TD, Butcher PD, Mitchison DA; RIFAQUIN Trial Team.

N Engl J Med. 2014 Oct 23;371(17):1599-608. doi: 10.1056/NEJMoa1314210.


Potassium availability triggers Mycobacterium tuberculosis transition to, and resuscitation from, non-culturable (dormant) states.

Salina EG, Waddell SJ, Hoffmann N, Rosenkrands I, Butcher PD, Kaprelyants AS.

Open Biol. 2014 Oct;4(10). pii: 140106. doi: 10.1098/rsob.140106.


Effects of mesh size and escape gaps on discarding in an Australian giant mud crab (Scylla serrata) trap fishery.

Broadhurst MK, Butcher PA, Cullis BR.

PLoS One. 2014 Sep 2;9(9):e106414. doi: 10.1371/journal.pone.0106414. eCollection 2014.


Absorption of metals in mulloway (Argyrosomus japonicus) after ingesting nickel-plated carbon-steel hooks.

McGrath SP, Reichelt-Brushett AJ, Butcher PA, Cairns SC.

Mar Environ Res. 2014 Aug;99:188-97. doi: 10.1016/j.marenvres.2014.06.005. Epub 2014 Jun 24.


Oleoyl coenzyme A regulates interaction of transcriptional regulator RaaS (Rv1219c) with DNA in mycobacteria.

Turapov O, Waddell SJ, Burke B, Glenn S, Sarybaeva AA, Tudo G, Labesse G, Young DI, Young M, Andrew PW, Butcher PD, Cohen-Gonsaud M, Mukamolova GV.

J Biol Chem. 2014 Sep 5;289(36):25241-9. doi: 10.1074/jbc.M114.577338. Epub 2014 Jul 10.


Multi-residue quantification of veterinary drugs in milk with a novel extraction and cleanup technique: salting out supported liquid extraction (SOSLE).

Kaufmann A, Butcher P, Maden K, Walker S, Widmer M.

Anal Chim Acta. 2014 Apr 11;820:56-68. doi: 10.1016/j.aca.2014.02.038. Epub 2014 Feb 26.


Determination of corticosteroids, anabolic steroids, and basic nonsteroidal anti-inflammatory drugs in milk and animal tissues.

Kaufmann A, Butcher P, Maden K, Walker S, Widmer M.

J AOAC Int. 2014 Jan-Feb;97(1):263-72.


Antimicrobial treatment improves mycobacterial survival in nonpermissive growth conditions.

Turapov O, Waddell SJ, Burke B, Glenn S, Sarybaeva AA, Tudo G, Labesse G, Young DI, Young M, Andrew PW, Butcher PD, Cohen-Gonsaud M, Mukamolova GV.

Antimicrob Agents Chemother. 2014 May;58(5):2798-806. doi: 10.1128/AAC.02774-13. Epub 2014 Mar 3.


Evidence for a role for interleukin-17, Th17 cells and iron homeostasis in protective immunity against tuberculosis in cynomolgus macaques.

Wareham AS, Tree JA, Marsh PD, Butcher PD, Dennis M, Sharpe SA.

PLoS One. 2014 Feb 4;9(2):e88149. doi: 10.1371/journal.pone.0088149. eCollection 2014.


Genome sequencing and characterization of an extensively drug-resistant sequence type 111 serotype O12 hospital outbreak strain of Pseudomonas aeruginosa.

Witney AA, Gould KA, Pope CF, Bolt F, Stoker NG, Cubbon MD, Bradley CR, Fraise A, Breathnach AS, Butcher PD, Planche TD, Hinds J.

Clin Microbiol Infect. 2014 Oct;20(10):O609-18. doi: 10.1111/1469-0691.12528. Epub 2014 Feb 8.


The Link between Peer Relations, Prosocial Behavior, and ODD/ADHD Symptoms in 7-9-Year-Old Children.

Paap MC, Haraldsen IR, Breivik K, Butcher PR, Hellem FM, Stormark KM.

Psychiatry J. 2013;2013:319874. doi: 10.1155/2013/319874. Epub 2012 Dec 18.


High prevalence of antibiotic-resistant Mycoplasma genitalium in nongonococcal urethritis: the need for routine testing and the inadequacy of current treatment options.

Pond MJ, Nori AV, Witney AA, Lopeman RC, Butcher PD, Sadiq ST.

Clin Infect Dis. 2014 Mar;58(5):631-7. doi: 10.1093/cid/cit752. Epub 2013 Nov 26.


Cserjesi et al. reply.

Cserjesi R, Van Braeckel KN, Timmerman M, Butcher PR, Kerstjens JM, Reijneveld SA, Bouma A, Bos AF, Geuze RH.

Dev Med Child Neurol. 2013 Jul;55(7):674. doi: 10.1111/dmcn.12144. Epub 2013 May 5. No abstract available.


Clinical signs of barotrauma in golden perch, Macquaria ambigua (Richardson), and associated effects on post-release mortality and health.

Hall KC, Broadhurst MK, Butcher PA.

J Fish Dis. 2014 Mar;37(3):251-64. doi: 10.1111/jfd.12103. Epub 2013 May 2.


Functioning of 7-year-old children born at 32 to 35 weeks' gestational age.

Cserjesi R, Van Braeckel KN, Butcher PR, Kerstjens JM, Reijneveld SA, Bouma A, Geuze RH, Bos AF.

Pediatrics. 2012 Oct;130(4):e838-46. doi: 10.1542/peds.2011-2079. Epub 2012 Sep 3.


Visuospatial perception in children born preterm with no major neurological disorders.

Butcher PR, Bouma A, Stremmelaar EF, Bos AF, Smithson M, Van Braeckel KN.

Neuropsychology. 2012 Nov;26(6):723-34. doi: 10.1037/a0029298. Epub 2012 Aug 20.


Study of high-resolution mass spectrometry technology as a replacement for tandem mass spectrometry in the field of quantitative pesticide residue analysis.

Kaufmann A, Dvorak V, Crüzer C, Butcher P, Maden K, Walker S, Widmer M, Schürmann A.

J AOAC Int. 2012 Mar-Apr;95(2):528-48.


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