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Items: 21

1.

Genomics of rapid ecological divergence and parallel adaptation in four tidal marsh sparrows.

Walsh J, Benham PM, Deane-Coe PE, Arcese P, Butcher BG, Chan YL, Cheviron ZA, Elphick CS, Kovach AI, Olsen BJ, Shriver WG, Winder VL, Lovette IJ.

Evol Lett. 2019 Jul 16;3(4):324-338. doi: 10.1002/evl3.126. eCollection 2019 Aug.

2.

Double-digest RAD sequencing outperforms microsatellite loci at assigning paternity and estimating relatedness: A proof of concept in a highly promiscuous bird.

Thrasher DJ, Butcher BG, Campagna L, Webster MS, Lovette IJ.

Mol Ecol Resour. 2018 Feb 17. doi: 10.1111/1755-0998.12771. [Epub ahead of print]

PMID:
29455472
3.

Modulation of extracytoplasmic function (ECF) sigma factor promoter selectivity by spacer region sequence.

Gaballa A, Guariglia-Oropeza V, Dürr F, Butcher BG, Chen AY, Chandrangsu P, Helmann JD.

Nucleic Acids Res. 2018 Jan 9;46(1):134-145. doi: 10.1093/nar/gkx953.

4.

The ECF sigma factor, PSPTO_1043, in Pseudomonas syringae pv. tomato DC3000 is induced by oxidative stress and regulates genes involved in oxidative stress response.

Butcher BG, Bao Z, Wilson J, Stodghill P, Swingle B, Filiatrault M, Schneider D, Cartinhour S.

PLoS One. 2017 Jul 12;12(7):e0180340. doi: 10.1371/journal.pone.0180340. eCollection 2017.

5.

Virulence of Pseudomonas syringae pv. tomato DC3000 Is Influenced by the Catabolite Repression Control Protein Crc.

Chakravarthy S, Butcher BG, Liu Y, D'Amico K, Coster M, Filiatrault MJ.

Mol Plant Microbe Interact. 2017 Apr;30(4):283-294. doi: 10.1094/MPMI-09-16-0196-R. Epub 2017 Apr 6.

6.

Disruption of the carA gene in Pseudomonas syringae results in reduced fitness and alters motility.

Butcher BG, Chakravarthy S, D'Amico K, Stoos KB, Filiatrault MJ.

BMC Microbiol. 2016 Aug 24;16(1):194. doi: 10.1186/s12866-016-0819-z.

7.

Plumage Genes and Little Else Distinguish the Genomes of Hybridizing Warblers.

Toews DP, Taylor SA, Vallender R, Brelsford A, Butcher BG, Messer PW, Lovette IJ.

Curr Biol. 2016 Sep 12;26(17):2313-8. doi: 10.1016/j.cub.2016.06.034. Epub 2016 Aug 18.

8.

Analysis of the small RNA spf in the plant pathogen Pseudomonas syringae pv. tomato strain DC3000.

Park SH, Bao Z, Butcher BG, D'Amico K, Xu Y, Stodghill P, Schneider DJ, Cartinhour S, Filiatrault MJ.

Microbiology. 2014 May;160(Pt 5):941-53. doi: 10.1099/mic.0.076497-0. Epub 2014 Mar 5.

PMID:
24600027
9.

CrcZ and CrcX regulate carbon source utilization in Pseudomonas syringae pathovar tomato strain DC3000.

Filiatrault MJ, Stodghill PV, Wilson J, Butcher BG, Chen H, Myers CR, Cartinhour SW.

RNA Biol. 2013 Feb;10(2):245-55. doi: 10.4161/rna.23019. Epub 2013 Jan 25.

10.

Analysis of the small RNA P16/RgsA in the plant pathogen Pseudomonas syringae pv. tomato strain DC3000.

Park SH, Butcher BG, Anderson Z, Pellegrini N, Bao Z, D'Amico K, Filiatrault MJ.

Microbiology. 2013 Feb;159(Pt 2):296-306. doi: 10.1099/mic.0.063826-0. Epub 2012 Dec 20.

11.

Regulons of three Pseudomonas syringae pv. tomato DC3000 iron starvation sigma factors.

Markel E, Butcher BG, Myers CR, Stodghill P, Cartinhour S, Swingle B.

Appl Environ Microbiol. 2013 Jan;79(2):725-7. doi: 10.1128/AEM.02801-12. Epub 2012 Nov 2.

12.

Genome-wide identification of transcriptional start sites in the plant pathogen Pseudomonas syringae pv. tomato str. DC3000.

Filiatrault MJ, Stodghill PV, Myers CR, Bronstein PA, Butcher BG, Lam H, Grills G, Schweitzer P, Wang W, Schneider DJ, Cartinhour SW.

PLoS One. 2011;6(12):e29335. doi: 10.1371/journal.pone.0029335. Epub 2011 Dec 28.

13.

An extracytoplasmic function sigma factor-mediated cell surface signaling system in Pseudomonas syringae pv. tomato DC3000 regulates gene expression in response to heterologous siderophores.

Markel E, Maciak C, Butcher BG, Myers CR, Stodghill P, Bao Z, Cartinhour S, Swingle B.

J Bacteriol. 2011 Oct;193(20):5775-83. doi: 10.1128/JB.05114-11. Epub 2011 Aug 12.

14.

Characterization of the Fur regulon in Pseudomonas syringae pv. tomato DC3000.

Butcher BG, Bronstein PA, Myers CR, Stodghill PV, Bolton JJ, Markel EJ, Filiatrault MJ, Swingle B, Gaballa A, Helmann JD, Schneider DJ, Cartinhour SW.

J Bacteriol. 2011 Sep;193(18):4598-611. doi: 10.1128/JB.00340-11. Epub 2011 Jul 22.

15.

Transcriptome analysis of Pseudomonas syringae identifies new genes, noncoding RNAs, and antisense activity.

Filiatrault MJ, Stodghill PV, Bronstein PA, Moll S, Lindeberg M, Grills G, Schweitzer P, Wang W, Schroth GP, Luo S, Khrebtukova I, Yang Y, Thannhauser T, Butcher BG, Cartinhour S, Schneider DJ.

J Bacteriol. 2010 May;192(9):2359-72. doi: 10.1128/JB.01445-09. Epub 2010 Feb 26.

16.

In vitro mutagenesis of Bacillus subtilis by using a modified Tn7 transposon with an outward-facing inducible promoter.

Bordi C, Butcher BG, Shi Q, Hachmann AB, Peters JE, Helmann JD.

Appl Environ Microbiol. 2008 Jun;74(11):3419-25. doi: 10.1128/AEM.00476-08. Epub 2008 Apr 11.

17.

The yydFGHIJ operon of Bacillus subtilis encodes a peptide that induces the LiaRS two-component system.

Butcher BG, Lin YP, Helmann JD.

J Bacteriol. 2007 Dec;189(23):8616-25. Epub 2007 Oct 5.

18.

LiaRS-dependent gene expression is embedded in transition state regulation in Bacillus subtilis.

Jordan S, Rietkötter E, Strauch MA, Kalamorz F, Butcher BG, Helmann JD, Mascher T.

Microbiology. 2007 Aug;153(Pt 8):2530-40.

PMID:
17660417
20.

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