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Items: 1 to 50 of 583

1.

Structural Variation Detection by Proximity Ligation from Formalin-Fixed, Paraffin-Embedded Tumor Tissue.

Troll CJ, Putnam NH, Hartley PD, Rice B, Blanchette M, Siddiqui S, Ganbat JO, Powers MP, Ramakrishnan R, Kunder CA, Bustamante CD, Zehnder JL, Green RE, Costa HA.

J Mol Diagn. 2018 Dec 31. pii: S1525-1578(18)30172-7. doi: 10.1016/j.jmoldx.2018.11.003. [Epub ahead of print]

PMID:
30605765
2.

Polygenic risk scores: a biased prediction?

De La Vega FM, Bustamante CD.

Genome Med. 2018 Dec 27;10(1):100. doi: 10.1186/s13073-018-0610-x.

3.

ATP-dependent force generation and membrane scission by ESCRT-III and Vps4.

Schöneberg J, Pavlin MR, Yan S, Righini M, Lee IH, Carlson LA, Bahrami AH, Goldman DH, Ren X, Hummer G, Bustamante C, Hurley JH.

Science. 2018 Dec 21;362(6421):1423-1428. doi: 10.1126/science.aat1839.

PMID:
30573630
4.

Rapid evolution of a skin-lightening allele in southern African KhoeSan.

Lin M, Siford RL, Martin AR, Nakagome S, Möller M, Hoal EG, Bustamante CD, Gignoux CR, Henn BM.

Proc Natl Acad Sci U S A. 2018 Dec 26;115(52):13324-13329. doi: 10.1073/pnas.1801948115. Epub 2018 Dec 10.

PMID:
30530665
5.

Standardized biogeographic grouping system for annotating populations in pharmacogenetic research.

Huddart R, Fohner AE, Whirl-Carrillo M, Wojcik GL, Gignoux CR, Popejoy AB, Bustamante CD, Altman RB, Klein TE.

Clin Pharmacol Ther. 2018 Dec 1. doi: 10.1002/cpt.1322. [Epub ahead of print]

PMID:
30506572
6.

Gut microbiome transition across a lifestyle gradient in Himalaya.

Jha AR, Davenport ER, Gautam Y, Bhandari D, Tandukar S, Ng KM, Fragiadakis GK, Holmes S, Gautam GP, Leach J, Sherchand JB, Bustamante CD, Sonnenburg JL.

PLoS Biol. 2018 Nov 15;16(11):e2005396. doi: 10.1371/journal.pbio.2005396. eCollection 2018 Nov.

7.

Preparation of Renewable Bio-Polyols from Two Species of Colliguaja for Rigid Polyurethane Foams.

Abril-Milán D, Valdés O, Mirabal-Gallardo Y, F de la Torre A, Bustamante C, Contreras J.

Materials (Basel). 2018 Nov 11;11(11). pii: E2244. doi: 10.3390/ma11112244.

8.

Population genomic analyses of the chocolate tree, Theobroma cacao L., provide insights into its domestication process.

Cornejo OE, Yee MC, Dominguez V, Andrews M, Sockell A, Strandberg E, Livingstone D 3rd, Stack C, Romero A, Umaharan P, Royaert S, Tawari NR, Ng P, Gutierrez O, Phillips W, Mockaitis K, Bustamante CD, Motamayor JC.

Commun Biol. 2018 Oct 16;1:167. doi: 10.1038/s42003-018-0168-6. eCollection 2018.

9.

Characterization of potential drug-drug interactions in patients hospitalized in the intensive care unit of a tertiary hospital in Bogotá

Hernández M, Tribiño G, Bustamante C.

Biomedica. 2018 Sep 1;38(3):407-416. doi: 10.7705/biomedica.v38i4.3884.

PMID:
30335246
10.

Gene expression imputation identifies candidate genes and susceptibility loci associated with cutaneous squamous cell carcinoma.

Ioannidis NM, Wang W, Furlotte NA, Hinds DA; 23andMe Research Team, Bustamante CD, Jorgenson E, Asgari MM, Whittemore AS.

Nat Commun. 2018 Oct 15;9(1):4264. doi: 10.1038/s41467-018-06149-6.

11.

The clinical imperative for inclusivity: Race, ethnicity, and ancestry (REA) in genomics.

Popejoy AB, Ritter DI, Crooks K, Currey E, Fullerton SM, Hindorff LA, Koenig B, Ramos EM, Sorokin EP, Wand H, Wright MW, Zou J, Gignoux CR, Bonham VL, Plon SE, Bustamante CD; Clinical Genome Resource (ClinGen) Ancestry and Diversity Working Group (ADWG).

Hum Mutat. 2018 Nov;39(11):1713-1720. doi: 10.1002/humu.23644.

PMID:
30311373
12.

Data mining of digitized health records in a resource-constrained setting reveals that timely immunophenotyping is associated with improved breast cancer outcomes.

López-Pineda A, Rodríguez-Moran MF, Álvarez-Aguilar C, Fuentes Valle SM, Acosta-Rosales R, Bhatt AS, Sheth SN, Bustamante CD.

BMC Cancer. 2018 Sep 27;18(1):933. doi: 10.1186/s12885-018-4833-4.

13.

An admixture mapping meta-analysis implicates genetic variation at 18q21 with asthma susceptibility in Latinos.

Gignoux CR, Torgerson DG, Pino-Yanes M, Uricchio LH, Galanter J, Roth LA, Eng C, Hu D, Nguyen EA, Huntsman S, Mathias RA, Kumar R, Rodriguez-Santana J, Thakur N, Oh SS, McGarry M, Moreno-Estrada A, Sandoval K, Winkler CA, Seibold MA, Padhukasahasram B, Conti DV, Farber HJ, Avila P, Brigino-Buenaventura E, Lenoir M, Meade K, Serebrisky D, Borrell LN, Rodriguez-Cintron W, Thyne S, Joubert BR, Romieu I, Levin AM, Sienra-Monge JJ, Del Rio-Navarro BE, Gan W, Raby BA, Weiss ST, Bleecker E, Meyers DA, Martinez FJ, Gauderman WJ, Gilliland F, London SJ, Bustamante CD, Nicolae DL, Ober C, Sen S, Barnes K, Williams LK, Hernandez RD, Burchard EG.

J Allergy Clin Immunol. 2018 Sep 7. pii: S0091-6749(18)31274-0. doi: 10.1016/j.jaci.2016.08.057. [Epub ahead of print]

PMID:
30201514
14.

Imputation-Aware Tag SNP Selection To Improve Power for Large-Scale, Multi-ethnic Association Studies.

Wojcik GL, Fuchsberger C, Taliun D, Welch R, Martin AR, Shringarpure S, Carlson CS, Abecasis G, Kang HM, Boehnke M, Bustamante CD, Gignoux CR, Kenny EE.

G3 (Bethesda). 2018 Oct 3;8(10):3255-3267. doi: 10.1534/g3.118.200502.

15.

In-solution Y-chromosome capture-enrichment on ancient DNA libraries.

Cruz-Dávalos DI, Nieves-Colón MA, Sockell A, Poznik GD, Schroeder H, Stone AC, Bustamante CD, Malaspinas AS, Ávila-Arcos MC.

BMC Genomics. 2018 Aug 14;19(1):608. doi: 10.1186/s12864-018-4945-x.

16.

Network enhancement as a general method to denoise weighted biological networks.

Wang B, Pourshafeie A, Zitnik M, Zhu J, Bustamante CD, Batzoglou S, Leskovec J.

Nat Commun. 2018 Aug 6;9(1):3108. doi: 10.1038/s41467-018-05469-x.

17.

Pause sequences facilitate entry into long-lived paused states by reducing RNA polymerase transcription rates.

Gabizon R, Lee A, Vahedian-Movahed H, Ebright RH, Bustamante CJ.

Nat Commun. 2018 Jul 26;9(1):2930. doi: 10.1038/s41467-018-05344-9.

18.

Molecular switch-like regulation enables global subunit coordination in a viral ring ATPase.

Tafoya S, Liu S, Castillo JP, Atz R, Morais MC, Grimes S, Jardine PJ, Bustamante C.

Proc Natl Acad Sci U S A. 2018 Jul 31;115(31):7961-7966. doi: 10.1073/pnas.1802736115. Epub 2018 Jul 16.

PMID:
30012596
19.

Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe.

Fregel R, Méndez FL, Bokbot Y, Martín-Socas D, Camalich-Massieu MD, Santana J, Morales J, Ávila-Arcos MC, Underhill PA, Shapiro B, Wojcik G, Rasmussen M, Soares AER, Kapp J, Sockell A, Rodríguez-Santos FJ, Mikdad A, Trujillo-Mederos A, Bustamante CD.

Proc Natl Acad Sci U S A. 2018 Jun 26;115(26):6774-6779. doi: 10.1073/pnas.1800851115. Epub 2018 Jun 12. Erratum in: Proc Natl Acad Sci U S A. 2018 Jul 24;115(30):E7231.

20.

Spectrum and prevalence of genetic predisposition in medulloblastoma: a retrospective genetic study and prospective validation in a clinical trial cohort.

Waszak SM, Northcott PA, Buchhalter I, Robinson GW, Sutter C, Groebner S, Grund KB, Brugières L, Jones DTW, Pajtler KW, Morrissy AS, Kool M, Sturm D, Chavez L, Ernst A, Brabetz S, Hain M, Zichner T, Segura-Wang M, Weischenfeldt J, Rausch T, Mardin BR, Zhou X, Baciu C, Lawerenz C, Chan JA, Varlet P, Guerrini-Rousseau L, Fults DW, Grajkowska W, Hauser P, Jabado N, Ra YS, Zitterbart K, Shringarpure SS, De La Vega FM, Bustamante CD, Ng HK, Perry A, MacDonald TJ, Hernáiz Driever P, Bendel AE, Bowers DC, McCowage G, Chintagumpala MM, Cohn R, Hassall T, Fleischhack G, Eggen T, Wesenberg F, Feychting M, Lannering B, Schüz J, Johansen C, Andersen TV, Röösli M, Kuehni CE, Grotzer M, Kjaerheim K, Monoranu CM, Archer TC, Duke E, Pomeroy SL, Shelagh R, Frank S, Sumerauer D, Scheurlen W, Ryzhova MV, Milde T, Kratz CP, Samuel D, Zhang J, Solomon DA, Marra M, Eils R, Bartram CR, von Hoff K, Rutkowski S, Ramaswamy V, Gilbertson RJ, Korshunov A, Taylor MD, Lichter P, Malkin D, Gajjar A, Korbel JO, Pfister SM.

Lancet Oncol. 2018 Jun;19(6):785-798. doi: 10.1016/S1470-2045(18)30242-0. Epub 2018 May 9.

21.

Molecular switch-like regulation in motor proteins.

Tafoya S, Bustamante C.

Philos Trans R Soc Lond B Biol Sci. 2018 Jun 19;373(1749). pii: 20170181. doi: 10.1098/rstb.2017.0181. Review.

PMID:
29735735
22.

Population structure in Argentina.

Muzzio M, Motti JMB, Paz Sepulveda PB, Yee MC, Cooke T, Santos MR, Ramallo V, Alfaro EL, Dipierri JE, Bailliet G, Bravi CM, Bustamante CD, Kenny EE.

PLoS One. 2018 May 1;13(5):e0196325. doi: 10.1371/journal.pone.0196325. eCollection 2018.

23.

Medical relevance of protein-truncating variants across 337,205 individuals in the UK Biobank study.

DeBoever C, Tanigawa Y, Lindholm ME, McInnes G, Lavertu A, Ingelsson E, Chang C, Ashley EA, Bustamante CD, Daly MJ, Rivas MA.

Nat Commun. 2018 Apr 24;9(1):1612. doi: 10.1038/s41467-018-03910-9.

24.

Next-Generation Sequencing of the Complete Mitochondrial Genome of the Endangered Species Black Lion Tamarin Leontopithecus chrysopygus (Primates) and Mitogenomic Phylogeny Focusing on the Callitrichidae Family.

de Freitas PD, Mendez FL, Chávez-Congrains K, Galetti PM Jr, Coutinho LL, Pissinatti A, Bustamante CD.

G3 (Bethesda). 2018 May 31;8(6):1985-1991. doi: 10.1534/g3.118.200153.

25.

Genomic insights into the origin and diversification of late maritime hunter-gatherers from the Chilean Patagonia.

de la Fuente C, Ávila-Arcos MC, Galimany J, Carpenter ML, Homburger JR, Blanco A, Contreras P, Cruz Dávalos D, Reyes O, San Roman M, Moreno-Estrada A, Campos PF, Eng C, Huntsman S, Burchard EG, Malaspinas AS, Bustamante CD, Willerslev E, Llop E, Verdugo RA, Moraga M.

Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):E4006-E4012. doi: 10.1073/pnas.1715688115. Epub 2018 Apr 9.

26.

Whole-genome sequencing of Atacama skeleton shows novel mutations linked with dysplasia.

Bhattacharya S, Li J, Sockell A, Kan MJ, Bava FA, Chen SC, Ávila-Arcos MC, Ji X, Smith E, Asadi NB, Lachman RS, Lam HYK, Bustamante CD, Butte AJ, Nolan GP.

Genome Res. 2018 Apr;28(4):423-431. doi: 10.1101/gr.223693.117. Epub 2018 Mar 22.

27.

Mechanochemical coupling and bi-phasic force-velocity dependence in the ultra-fast ring ATPase SpoIIIE.

Liu N, Chistol G, Cui Y, Bustamante C.

Elife. 2018 Mar 5;7. pii: e32354. doi: 10.7554/eLife.32354.

28.

Origins and genetic legacies of the Caribbean Taino.

Schroeder H, Sikora M, Gopalakrishnan S, Cassidy LM, Maisano Delser P, Sandoval Velasco M, Schraiber JG, Rasmussen S, Homburger JR, Ávila-Arcos MC, Allentoft ME, Moreno-Mayar JV, Renaud G, Gómez-Carballa A, Laffoon JE, Hopkins RJA, Higham TFG, Carr RS, Schaffer WC, Day JS, Hoogland M, Salas A, Bustamante CD, Nielsen R, Bradley DG, Hofman CL, Willerslev E.

Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):2341-2346. doi: 10.1073/pnas.1716839115. Epub 2018 Feb 20.

29.

Full molecular trajectories of RNA polymerase at single base-pair resolution.

Righini M, Lee A, Cañari-Chumpitaz C, Lionberger T, Gabizon R, Coello Y, Tinoco I Jr, Bustamante C.

Proc Natl Acad Sci U S A. 2018 Feb 6;115(6):1286-1291. doi: 10.1073/pnas.1719906115. Epub 2018 Jan 19.

30.

A genome-wide association study identifies only two ancestry specific variants associated with spontaneous preterm birth.

Rappoport N, Toung J, Hadley D, Wong RJ, Fujioka K, Reuter J, Abbott CW, Oh S, Hu D, Eng C, Huntsman S, Bodian DL, Niederhuber JE, Hong X, Zhang G, Sikora-Wohfeld W, Gignoux CR, Wang H, Oehlert J, Jelliffe-Pawlowski LL, Gould JB, Darmstadt GL, Wang X, Bustamante CD, Snyder MP, Ziv E, Patsopoulos NA, Muglia LJ, Burchard E, Shaw GM, O'Brodovich HM, Stevenson DK, Butte AJ, Sirota M.

Sci Rep. 2018 Jan 9;8(1):226. doi: 10.1038/s41598-017-18246-5.

31.

Whole-genome sequencing reveals the extent of heterozygosity in a preferentially self-fertilizing hermaphroditic vertebrate.

Lins LSF, Trojahn S, Sockell A, Yee MC, Tatarenkov A, Bustamante CD, Earley RL, Kelley JL.

Genome. 2018 Apr;61(4):241-247. doi: 10.1139/gen-2017-0188. Epub 2017 Dec 21.

32.

Author Correction: The energy cost of polypeptide knot formation and its folding consequences.

Bustamante A, Sotelo-Campos J, Guerra DG, Floor M, Wilson CAM, Bustamante C, Báez M.

Nat Commun. 2017 Dec 14;8(1):2195. doi: 10.1038/s41467-017-02384-5.

33.

An Unexpectedly Complex Architecture for Skin Pigmentation in Africans.

Martin AR, Lin M, Granka JM, Myrick JW, Liu X, Sockell A, Atkinson EG, Werely CJ, Möller M, Sandhu MS, Kingsley DM, Hoal EG, Liu X, Daly MJ, Feldman MW, Gignoux CR, Bustamante CD, Henn BM.

Cell. 2017 Nov 30;171(6):1340-1353.e14. doi: 10.1016/j.cell.2017.11.015.

34.

[Abnormal expansion of C9orf72 gene in familial frontotemporal dementia].

Miranda C M, Bustamante C ML, Herrera C L.

Rev Med Chil. 2017 Jul;145(7):896-900. doi: 10.4067/s0034-98872017000700896. Spanish.

35.

Corrigendum to "Single-molecule in vivo imaging of bacterial respiratory complexes indicates delocalized oxidative phosphorylation" [Biochim. Biophys. Acta 1837(6) (2014) 811-824 DOI: 10.1016/j.bbabio.2014.01.020].

Llorente-Garcia I, Lenn T, Erhardt H, Harriman OL, Liu LN, Robson A, Chiu SW, Matthews S, Willis NJ, Bray CD, Lee SH, Shin JY, Bustamante C, Liphardt J, Friedrich T, Mullineaux CW, Leake MC.

Biochim Biophys Acta Bioenerg. 2018 Feb;1859(2):164. doi: 10.1016/j.bbabio.2017.11.005. Epub 2017 Nov 22. No abstract available.

PMID:
29175561
36.

The energy cost of polypeptide knot formation and its folding consequences.

Bustamante A, Sotelo-Campos J, Guerra DG, Floor M, Wilson CAM, Bustamante C, Báez M.

Nat Commun. 2017 Nov 17;8(1):1581. doi: 10.1038/s41467-017-01691-1. Erratum in: Nat Commun. 2017 Dec 14;8(1):2195.

37.

Differential lipidome remodeling during postharvest of peach varieties with different susceptibility to chilling injury.

Bustamante CA, Brotman Y, Monti LL, Gabilondo J, Budde CO, Lara MV, Fernie AR, Drincovich MF.

Physiol Plant. 2018 May;163(1):2-17. doi: 10.1111/ppl.12665. Epub 2017 Dec 5.

PMID:
29094760
38.

Genetic Mapping and Biochemical Basis of Yellow Feather Pigmentation in Budgerigars.

Cooke TF, Fischer CR, Wu P, Jiang TX, Xie KT, Kuo J, Doctorov E, Zehnder A, Khosla C, Chuong CM, Bustamante CD.

Cell. 2017 Oct 5;171(2):427-439.e21. doi: 10.1016/j.cell.2017.08.016.

39.

FIRE: functional inference of genetic variants that regulate gene expression.

Ioannidis NM, Davis JR, DeGorter MK, Larson NB, McDonnell SK, French AJ, Battle AJ, Hastie TJ, Thibodeau SN, Montgomery SB, Bustamante CD, Sieh W, Whittemore AS.

Bioinformatics. 2017 Dec 15;33(24):3895-3901. doi: 10.1093/bioinformatics/btx534.

40.

Single nucleotide polymorphisms for DNA typing in the domestic horse.

Holl HM, Vanhnasy J, Everts RE, Hoefs-Martin K, Cook D, Brooks SA, Carpenter ML, Bustamante CD, Lafayette C.

Anim Genet. 2017 Dec;48(6):669-676. doi: 10.1111/age.12608. Epub 2017 Sep 13.

PMID:
28901559
41.

Knots can impair protein degradation by ATP-dependent proteases.

San Martín Á, Rodriguez-Aliaga P, Molina JA, Martin A, Bustamante C, Baez M.

Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):9864-9869. doi: 10.1073/pnas.1705916114. Epub 2017 Aug 28.

42.

Patterns of genomic and phenomic diversity in wine and table grapes.

Migicovsky Z, Sawler J, Gardner KM, Aradhya MK, Prins BH, Schwaninger HR, Bustamante CD, Buckler ES, Zhong GY, Brown PJ, Myles S.

Hortic Res. 2017 Aug 2;4:17035. doi: 10.1038/hortres.2017.35. eCollection 2017.

43.

In utero virilization secondary to a maternal Krukenberg tumor: case report and review of literature.

Bustamante C, Hoyos-Martínez A, Pirela D, Díaz A.

J Pediatr Endocrinol Metab. 2017 Jul 26;30(7):785-790. doi: 10.1515/jpem-2016-0433. Review.

PMID:
28682787
44.

Brief psychosis induced by methylphenidate in a child with attention deficit disorder: a case report and literature review.

Martínez-Aguayo JC, Arancibia M, Meza-Concha N, Bustamante C, Pérez-Bracchiglione J, Madrid E.

Medwave. 2017 Jun 21;17(5):e6980. doi: 10.5867/medwave.2017.05.6980. Review. Spanish, English.

PMID:
28665917
45.

Comparative proteomic and metabolomic studies between Prunus persica genotypes resistant and susceptible to Taphrina deformans suggest a molecular basis of resistance.

Goldy C, Svetaz LA, Bustamante CA, Allegrini M, Valentini GH, Drincovich MF, Fernie AR, Lara MV.

Plant Physiol Biochem. 2017 Sep;118:245-255. doi: 10.1016/j.plaphy.2017.06.022. Epub 2017 Jun 17.

PMID:
28651230
46.

Molecular machines one molecule at a time.

Bustamante C.

Protein Sci. 2017 Jul;26(7):1245-1248. doi: 10.1002/pro.3205. No abstract available.

47.

Complexities of gene expression patterns in natural populations of an extremophile fish (Poecilia mexicana, Poeciliidae).

Passow CN, Brown AP, Arias-Rodriguez L, Yee MC, Sockell A, Schartl M, Warren WC, Bustamante C, Kelley JL, Tobler M.

Mol Ecol. 2017 Aug;26(16):4211-4225. doi: 10.1111/mec.14198. Epub 2017 Jul 4.

48.

Patient-centred care and shared decision making in Chile: Rising momentum for progress and implementation in clinical practice.

Bravo P, Dois A, Cabieses B, Bustamante C, Campos S, Stacey D.

Z Evid Fortbild Qual Gesundhwes. 2017 Jun;123-124:28-31. doi: 10.1016/j.zefq.2017.05.014. Epub 2017 May 19. Review.

PMID:
28529121
49.

Dispersals and genetic adaptation of Bantu-speaking populations in Africa and North America.

Patin E, Lopez M, Grollemund R, Verdu P, Harmant C, Quach H, Laval G, Perry GH, Barreiro LB, Froment A, Heyer E, Massougbodji A, Fortes-Lima C, Migot-Nabias F, Bellis G, Dugoujon JM, Pereira JB, Fernandes V, Pereira L, Van der Veen L, Mouguiama-Daouda P, Bustamante CD, Hombert JM, Quintana-Murci L.

Science. 2017 May 5;356(6337):543-546. doi: 10.1126/science.aal1988.

PMID:
28473590
50.

Identifying tagging SNPs for African specific genetic variation from the African Diaspora Genome.

Johnston HR, Hu YJ, Gao J, O'Connor TD, Abecasis GR, Wojcik GL, Gignoux CR, Gourraud PA, Lizee A, Hansen M, Genuario R, Bullis D, Lawley C, Kenny EE, Bustamante C, Beaty TH, Mathias RA, Barnes KC, Qin ZS; CAAPA Consortium.

Sci Rep. 2017 Apr 21;7:46398. doi: 10.1038/srep46398.

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