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Items: 47

1.

Corrigendum: Double-flow focused liquid injector for efficient serial femtosecond crystallography.

Oberthuer D, Knoška J, Wiedorn MO, Beyerlein KR, Bushnell DA, Kovaleva EG, Heymann M, Gumprecht L, Kirian RA, Barty A, Mariani V, Tolstikova A, Adriano L, Awel S, Barthelmess M, Dörner K, Xavier PL, Yefanov O, James DR, Nelson G, Wang D, Calvey G, Chen Y, Schmidt A, Szczepek M, Frielingsdorf S, Lenz O, Snell E, Robinson PJ, Šarler B, Belšak G, Maček M, Wilde F, Aquila A, Boutet S, Liang M, Hunter MS, Scheerer P, Lipscomb JD, Weierstall U, Kornberg RD, Spence JCH, Pollack L, Chapman HN, Bajt S.

Sci Rep. 2017 Jun 21;7:46846. doi: 10.1038/srep46846.

2.

The Intergenic Recombinant HLA-B∗46:01 Has a Distinctive Peptidome that Includes KIR2DL3 Ligands.

Hilton HG, McMurtrey CP, Han AS, Djaoud Z, Guethlein LA, Blokhuis JH, Pugh JL, Goyos A, Horowitz A, Buchli R, Jackson KW, Bardet W, Bushnell DA, Robinson PJ, Mendoza JL, Birnbaum ME, Nielsen M, Garcia KC, Hildebrand WH, Parham P.

Cell Rep. 2017 May 16;19(7):1394-1405. doi: 10.1016/j.celrep.2017.04.059.

3.

Double-flow focused liquid injector for efficient serial femtosecond crystallography.

Oberthuer D, Knoška J, Wiedorn MO, Beyerlein KR, Bushnell DA, Kovaleva EG, Heymann M, Gumprecht L, Kirian RA, Barty A, Mariani V, Tolstikova A, Adriano L, Awel S, Barthelmess M, Dörner K, Xavier PL, Yefanov O, James DR, Nelson G, Wang D, Calvey G, Chen Y, Schmidt A, Szczepek M, Frielingsdorf S, Lenz O, Snell E, Robinson PJ, Šarler B, Belšak G, Maček M, Wilde F, Aquila A, Boutet S, Liang M, Hunter MS, Scheerer P, Lipscomb JD, Weierstall U, Kornberg RD, Spence JC, Pollack L, Chapman HN, Bajt S.

Sci Rep. 2017 Mar 16;7:44628. doi: 10.1038/srep44628. Erratum in: Sci Rep. 2017 Jun 21;7:46846.

4.

Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex.

Robinson PJ, Trnka MJ, Bushnell DA, Davis RE, Mattei PJ, Burlingame AL, Kornberg RD.

Cell. 2016 Sep 8;166(6):1411-1422.e16. doi: 10.1016/j.cell.2016.08.050.

5.

Structure of an RNA polymerase II preinitiation complex.

Murakami K, Tsai KL, Kalisman N, Bushnell DA, Asturias FJ, Kornberg RD.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):13543-8. doi: 10.1073/pnas.1518255112. Epub 2015 Oct 19.

6.

Molecular architecture of the yeast Mediator complex.

Robinson PJ, Trnka MJ, Pellarin R, Greenberg CH, Bushnell DA, Davis R, Burlingame AL, Sali A, Kornberg RD.

Elife. 2015 Sep 24;4. pii: e08719. doi: 10.7554/eLife.08719.

7.

Polymorphic HLA-C Receptors Balance the Functional Characteristics of KIR Haplotypes.

Hilton HG, Guethlein LA, Goyos A, Nemat-Gorgani N, Bushnell DA, Norman PJ, Parham P.

J Immunol. 2015 Oct 1;195(7):3160-70. doi: 10.4049/jimmunol.1501358. Epub 2015 Aug 26.

8.

Deconvolution method for specific and nonspecific binding of ligand to multiprotein complex by native mass spectrometry.

Guan S, Trnka MJ, Bushnell DA, Robinson PJ, Gestwicki JE, Burlingame AL.

Anal Chem. 2015 Aug 18;87(16):8541-6. doi: 10.1021/acs.analchem.5b02258. Epub 2015 Jul 29.

9.

Architecture of an RNA polymerase II transcription pre-initiation complex.

Murakami K, Elmlund H, Kalisman N, Bushnell DA, Adams CM, Azubel M, Elmlund D, Levi-Kalisman Y, Liu X, Gibbons BJ, Levitt M, Kornberg RD.

Science. 2013 Nov 8;342(6159):1238724. doi: 10.1126/science.1238724. Epub 2013 Sep 26.

10.

Structure of the mediator head module bound to the carboxy-terminal domain of RNA polymerase II.

Robinson PJ, Bushnell DA, Trnka MJ, Burlingame AL, Kornberg RD.

Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):17931-5. doi: 10.1073/pnas.1215241109. Epub 2012 Oct 15.

11.

RNA polymerase II transcription: structure and mechanism.

Liu X, Bushnell DA, Kornberg RD.

Biochim Biophys Acta. 2013 Jan;1829(1):2-8. doi: 10.1016/j.bbagrm.2012.09.003. Epub 2012 Sep 18. Review.

12.

Subunit architecture of general transcription factor TFIIH.

Gibbons BJ, Brignole EJ, Azubel M, Murakami K, Voss NR, Bushnell DA, Asturias FJ, Kornberg RD.

Proc Natl Acad Sci U S A. 2012 Feb 7;109(6):1949-54. doi: 10.1073/pnas.1105266109. Epub 2012 Jan 20.

13.

Lock and key to transcription: σ-DNA interaction.

Liu X, Bushnell DA, Kornberg RD.

Cell. 2011 Dec 9;147(6):1218-9. doi: 10.1016/j.cell.2011.11.033.

14.

Initiation complex structure and promoter proofreading.

Liu X, Bushnell DA, Silva DA, Huang X, Kornberg RD.

Science. 2011 Jul 29;333(6042):633-7. doi: 10.1126/science.1206629.

15.

Synthesis and characterization of Au102(p-MBA)44 nanoparticles.

Levi-Kalisman Y, Jadzinsky PD, Kalisman N, Tsunoyama H, Tsukuda T, Bushnell DA, Kornberg RD.

J Am Chem Soc. 2011 Mar 9;133(9):2976-82. doi: 10.1021/ja109131w. Epub 2011 Feb 14.

PMID:
21319754
16.

RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription.

Huang X, Wang D, Weiss DR, Bushnell DA, Kornberg RD, Levitt M.

Proc Natl Acad Sci U S A. 2010 Sep 7;107(36):15745-50. doi: 10.1073/pnas.1009898107. Epub 2010 Aug 23.

17.

Synthesis and bioconjugation of 2 and 3 nm-diameter gold nanoparticles.

Ackerson CJ, Jadzinsky PD, Sexton JZ, Bushnell DA, Kornberg RD.

Bioconjug Chem. 2010 Feb 17;21(2):214-8. doi: 10.1021/bc900135d.

18.

Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism.

Liu X, Bushnell DA, Wang D, Calero G, Kornberg RD.

Science. 2010 Jan 8;327(5962):206-9. doi: 10.1126/science.1182015. Epub 2009 Nov 12.

19.

KIR2DS4 is a product of gene conversion with KIR3DL2 that introduced specificity for HLA-A*11 while diminishing avidity for HLA-C.

Graef T, Moesta AK, Norman PJ, Abi-Rached L, Vago L, Older Aguilar AM, Gleimer M, Hammond JA, Guethlein LA, Bushnell DA, Robinson PJ, Parham P.

J Exp Med. 2009 Oct 26;206(11):2557-72. doi: 10.1084/jem.20091010.

20.

Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution.

Wang D, Bushnell DA, Huang X, Westover KD, Levitt M, Kornberg RD.

Science. 2009 May 29;324(5931):1203-6. doi: 10.1126/science.1168729.

21.

Schizosacharomyces pombe RNA polymerase II at 3.6-A resolution.

Spåhr H, Calero G, Bushnell DA, Kornberg RD.

Proc Natl Acad Sci U S A. 2009 Jun 9;106(23):9185-90. doi: 10.1073/pnas.0903361106. Epub 2009 May 20.

22.

Structure of a thiol monolayer-protected gold nanoparticle at 1.1 A resolution.

Jadzinsky PD, Calero G, Ackerson CJ, Bushnell DA, Kornberg RD.

Science. 2007 Oct 19;318(5849):430-3.

23.

Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis.

Wang D, Bushnell DA, Westover KD, Kaplan CD, Kornberg RD.

Cell. 2006 Dec 1;127(5):941-54.

24.

Structural basis of eukaryotic gene transcription.

Boeger H, Bushnell DA, Davis R, Griesenbeck J, Lorch Y, Strattan JS, Westover KD, Kornberg RD.

FEBS Lett. 2005 Feb 7;579(4):899-903. Review.

25.

Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center.

Batada NN, Westover KD, Bushnell DA, Levitt M, Kornberg RD.

Proc Natl Acad Sci U S A. 2004 Dec 14;101(50):17361-4. Epub 2004 Dec 1.

26.

Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center.

Westover KD, Bushnell DA, Kornberg RD.

Cell. 2004 Nov 12;119(4):481-9. Erratum in: Cell.2004 Dec 29;119(7):1055.

27.

Structural basis of transcription: separation of RNA from DNA by RNA polymerase II.

Westover KD, Bushnell DA, Kornberg RD.

Science. 2004 Feb 13;303(5660):1014-6.

28.

Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms.

Bushnell DA, Westover KD, Davis RE, Kornberg RD.

Science. 2004 Feb 13;303(5660):983-8.

29.

Complete, 12-subunit RNA polymerase II at 4.1-A resolution: implications for the initiation of transcription.

Bushnell DA, Kornberg RD.

Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):6969-73. Epub 2003 May 13.

30.

Structural basis of transcription: alpha-amanitin-RNA polymerase II cocrystal at 2.8 A resolution.

Bushnell DA, Cramer P, Kornberg RD.

Proc Natl Acad Sci U S A. 2002 Feb 5;99(3):1218-22. Epub 2002 Jan 22.

31.

Selenomethionine incorporation in Saccharomyces cerevisiae RNA polymerase II.

Bushnell DA, Cramer P, Kornberg RD.

Structure. 2001 Jan 10;9(1):R11-4.

32.

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution.

Gnatt AL, Cramer P, Fu J, Bushnell DA, Kornberg RD.

Science. 2001 Jun 8;292(5523):1876-82. Epub 2001 Apr 19.

33.

Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution.

Cramer P, Bushnell DA, Kornberg RD.

Science. 2001 Jun 8;292(5523):1863-76. Epub 2001 Apr 19.

34.

Architecture of RNA polymerase II and implications for the transcription mechanism.

Cramer P, Bushnell DA, Fu J, Gnatt AL, Maier-Davis B, Thompson NE, Burgess RR, Edwards AM, David PR, Kornberg RD.

Science. 2000 Apr 28;288(5466):640-9.

35.

Yeast RNA polymerase II at 5 A resolution.

Fu J, Gnatt AL, Bushnell DA, Jensen GJ, Thompson NE, Burgess RR, David PR, Kornberg RD.

Cell. 1999 Sep 17;98(6):799-810.

36.

Repeated tertiary fold of RNA polymerase II and implications for DNA binding.

Fu J, Gerstein M, David PR, Gnatt AL, Bushnell DA, Edwards AM, Kornberg RD.

J Mol Biol. 1998 Jul 17;280(3):317-22.

PMID:
9665838
37.

Structure of wild-type yeast RNA polymerase II and location of Rpb4 and Rpb7.

Jensen GJ, Meredith G, Bushnell DA, Kornberg RD.

EMBO J. 1998 Apr 15;17(8):2353-8.

38.

The Med proteins of yeast and their function through the RNA polymerase II carboxy-terminal domain.

Myers LC, Gustafsson CM, Bushnell DA, Lui M, Erdjument-Bromage H, Tempst P, Kornberg RD.

Genes Dev. 1998 Jan 1;12(1):45-54.

40.

Genes for Tfb2, Tfb3, and Tfb4 subunits of yeast transcription/repair factor IIH. Homology to human cyclin-dependent kinase activating kinase and IIH subunits.

Feaver WJ, Henry NL, Wang Z, Wu X, Svejstrup JQ, Bushnell DA, Friedberg EC, Kornberg RD.

J Biol Chem. 1997 Aug 1;272(31):19319-27.

41.

Yeast RNA polymerase II transcription reconstituted with purified proteins.

Myers LC, Leuther K, Bushnell DA, Gustafsson CM, Kornberg RD.

Methods. 1997 Jul;12(3):212-6.

PMID:
9237165
42.

A yeast transcriptional stimulatory protein similar to human PC4.

Henry NL, Bushnell DA, Kornberg RD.

J Biol Chem. 1996 Sep 6;271(36):21842-7.

43.

A minimal set of RNA polymerase II transcription protein interactions.

Bushnell DA, Bamdad C, Kornberg RD.

J Biol Chem. 1996 Aug 16;271(33):20170-4.

45.

The C-terminal domain revealed in the structure of RNA polymerase II.

Meredith GD, Chang WH, Li Y, Bushnell DA, Darst SA, Kornberg RD.

J Mol Biol. 1996 May 10;258(3):413-9.

PMID:
8642599
46.

Different forms of TFIIH for transcription and DNA repair: holo-TFIIH and a nucleotide excision repairosome.

Svejstrup JQ, Wang Z, Feaver WJ, Wu X, Bushnell DA, Donahue TF, Friedberg EC, Kornberg RD.

Cell. 1995 Jan 13;80(1):21-8.

47.

Yeast TFIIE. Cloning, expression, and homology to vertebrate proteins.

Feaver WJ, Henry NL, Bushnell DA, Sayre MH, Brickner JH, Gileadi O, Kornberg RD.

J Biol Chem. 1994 Nov 4;269(44):27549-53.

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