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Items: 33

1.

Harnessing Hematopoietic Stem Cell Low Intracellular Calcium Improves Their Maintenance In Vitro.

Luchsinger LL, Strikoudis A, Danzl NM, Bush EC, Finlayson MO, Satwani P, Sykes M, Yazawa M, Snoeck HW.

Cell Stem Cell. 2019 Aug 1;25(2):225-240.e7. doi: 10.1016/j.stem.2019.05.002. Epub 2019 Jun 6.

PMID:
31178255
2.

De novo gene signature identification from single-cell RNA-seq with hierarchical Poisson factorization.

Levitin HM, Yuan J, Cheng YL, Ruiz FJ, Bush EC, Bruce JN, Canoll P, Iavarone A, Lasorella A, Blei DM, Sims PA.

Mol Syst Biol. 2019 Feb 22;15(2):e8557. doi: 10.15252/msb.20188557.

3.

Fat-Water Phantoms for Magnetic Resonance Imaging Validation: A Flexible and Scalable Protocol.

Bush EC, Gifford A, Coolbaugh CL, Towse TF, Damon BM, Welch EB.

J Vis Exp. 2018 Sep 7;(139). doi: 10.3791/57704.

4.

Single-cell transcriptome analysis of lineage diversity in high-grade glioma.

Yuan J, Levitin HM, Frattini V, Bush EC, Boyett DM, Samanamud J, Ceccarelli M, Dovas A, Zanazzi G, Canoll P, Bruce JN, Lasorella A, Iavarone A, Sims PA.

Genome Med. 2018 Jul 24;10(1):57. doi: 10.1186/s13073-018-0567-9.

5.

Graph complexity analysis identifies an ETV5 tumor-specific network in human and murine low-grade glioma.

Pan Y, Duron C, Bush EC, Ma Y, Sims PA, Gutmann DH, Radunskaya A, Hardin J.

PLoS One. 2018 May 22;13(5):e0190001. doi: 10.1371/journal.pone.0190001. eCollection 2018.

6.

An Individualized, Perception-Based Protocol to Investigate Human Physiological Responses to Cooling.

Coolbaugh CL, Bush EC, Galenti ES, Welch EB, Towse TF.

Front Physiol. 2018 Mar 13;9:195. doi: 10.3389/fphys.2018.00195. eCollection 2018.

7.

xenoGI: reconstructing the history of genomic island insertions in clades of closely related bacteria.

Bush EC, Clark AE, DeRanek CA, Eng A, Forman J, Heath K, Lee AB, Stoebel DM, Wang Z, Wilber M, Wu H.

BMC Bioinformatics. 2018 Feb 5;19(1):32. doi: 10.1186/s12859-018-2038-0.

8.

Whole tumor RNA-sequencing and deconvolution reveal a clinically-prognostic PTEN/PI3K-regulated glioma transcriptional signature.

Pan Y, Bush EC, Toonen JA, Ma Y, Solga AC, Sims PA, Gutmann DH.

Oncotarget. 2017 Apr 18;8(32):52474-52487. doi: 10.18632/oncotarget.17193. eCollection 2017 Aug 8.

9.

PLATE-Seq for genome-wide regulatory network analysis of high-throughput screens.

Bush EC, Ray F, Alvarez MJ, Realubit R, Li H, Karan C, Califano A, Sims PA.

Nat Commun. 2017 Jul 24;8(1):105. doi: 10.1038/s41467-017-00136-z.

10.

Genome-Wide Transcriptional Response to Varying RpoS Levels in Escherichia coli K-12.

Wong GT, Bonocora RP, Schep AN, Beeler SM, Lee Fong AJ, Shull LM, Batachari LE, Dillon M, Evans C, Becker CJ, Bush EC, Hardin J, Wade JT, Stoebel DM.

J Bacteriol. 2017 Mar 14;199(7). pii: e00755-16. doi: 10.1128/JB.00755-16. Print 2017 Apr 1.

11.

Post-contractile BOLD contrast in skeletal muscle at 7 T reveals inter-individual heterogeneity in the physiological responses to muscle contraction.

Towse TF, Elder CP, Bush EC, Klockenkemper SW, Bullock JT, Dortch RD, Damon BM.

NMR Biomed. 2016 Dec;29(12):1720-1728. doi: 10.1002/nbm.3593. Epub 2016 Oct 18.

12.

FloWave.US: validated, open-source, and flexible software for ultrasound blood flow analysis.

Coolbaugh CL, Bush EC, Caskey CF, Damon BM, Towse TF.

J Appl Physiol (1985). 2016 Oct 1;121(4):849-857. doi: 10.1152/japplphysiol.00819.2015. Epub 2016 Aug 11.

13.

Human memory T cells with a naive phenotype accumulate with aging and respond to persistent viruses.

Pulko V, Davies JS, Martinez C, Lanteri MC, Busch MP, Diamond MS, Knox K, Bush EC, Sims PA, Sinari S, Billheimer D, Haddad EK, Murray KO, Wertheimer AM, Nikolich-Žugich J.

Nat Immunol. 2016 Aug;17(8):966-75. doi: 10.1038/ni.3483. Epub 2016 Jun 6.

14.

Skeletal muscle diffusion tensor-MRI fiber tracking: rationale, data acquisition and analysis methods, applications and future directions.

Damon BM, Froeling M, Buck AK, Oudeman J, Ding Z, Nederveen AJ, Bush EC, Strijkers GJ.

NMR Biomed. 2017 Mar;30(3). doi: 10.1002/nbm.3563. Epub 2016 Jun 3. Review.

15.

A hand hygiene compliance check system: brief communication on a system to improve hand hygiene compliance in hospitals and reduce infection.

Hong TS, Bush EC, Hauenstein MF, Lafontant A, Li C, Wanderer JP, Ehrenfeld JM.

J Med Syst. 2015 Jun;39(6):69. doi: 10.1007/s10916-015-0253-z. Epub 2015 May 12.

PMID:
25963200
16.

Comparison of muscle BOLD responses to arterial occlusion at 3 and 7 Tesla.

Towse TF, Childs BT, Sabin SA, Bush EC, Elder CP, Damon BM.

Magn Reson Med. 2016 Mar;75(3):1333-40. doi: 10.1002/mrm.25562. Epub 2015 Apr 17.

17.

The dynamic DNA methylation cycle from egg to sperm in the honey bee Apis mellifera.

Drewell RA, Bush EC, Remnant EJ, Wong GT, Beeler SM, Stringham JL, Lim J, Oldroyd BP.

Development. 2014 Jul;141(13):2702-11. doi: 10.1242/dev.110163. Epub 2014 Jun 12.

18.

Whole-genome DNA methylation profile of the jewel wasp (Nasonia vitripennis).

Beeler SM, Wong GT, Zheng JM, Bush EC, Remnant EJ, Oldroyd BP, Drewell RA.

G3 (Bethesda). 2014 Mar 20;4(3):383-8. doi: 10.1534/g3.113.008953.

19.

Modeling the role of negative cooperativity in metabolic regulation and homeostasis.

Bush EC, Clark AE, DeBoever CM, Haynes LE, Hussain S, Ma S, McDermott MB, Novak AM, Wentworth JS.

PLoS One. 2012;7(11):e48920. doi: 10.1371/journal.pone.0048920. Epub 2012 Nov 9. Erratum in: PLoS One. 2013;8(9). doi: 10.1371/annotation/0e4bae85-55dd-4235-a39b-38d02cfd481e. McDermott, Matthew M [corrected to McDermott, Matthew B A].

20.

Integrating genomics research throughout the undergraduate curriculum: a collection of inquiry-based genomics lab modules.

Banta LM, Crespi EJ, Nehm RH, Schwarz JA, Singer S, Manduca CA, Bush EC, Collins E, Constance CM, Dean D, Esteban D, Fox S, McDaris J, Paul CA, Quinan G, Raley-Susman KM, Smith ML, Wallace CS, Withers GS, Caporale L.

CBE Life Sci Educ. 2012 Fall;11(3):203-8. doi: 10.1187/cbe.11-12-0105. No abstract available.

21.

Context dependent substitution biases vary within the human genome.

Nevarez PA, DeBoever CM, Freeland BJ, Quitt MA, Bush EC.

BMC Bioinformatics. 2010 Sep 15;11:462. doi: 10.1186/1471-2105-11-462.

22.

Chromatin analysis of occluded genes.

Lee JH, Gaetz J, Bugarija B, Fernandes CJ, Snyder GE, Bush EC, Lahn BT.

Hum Mol Genet. 2009 Jul 15;18(14):2567-74. doi: 10.1093/hmg/ddp188. Epub 2009 Apr 20.

23.

A genome-wide screen for noncoding elements important in primate evolution.

Bush EC, Lahn BT.

BMC Evol Biol. 2008 Jan 23;8:17. doi: 10.1186/1471-2148-8-17.

24.

The evolution of word composition in metazoan promoter sequence.

Bush EC, Lahn BT.

PLoS Comput Biol. 2006 Nov 3;2(11):e150. Epub 2006 Sep 28.

25.

Selective constraint on noncoding regions of hominid genomes.

Bush EC, Lahn BT.

PLoS Comput Biol. 2005 Dec;1(7):e73. Epub 2005 Dec 16.

26.

Different classes of tissue-specific genes show different levels of noncoding conservation.

Choi SS, Bush EC, Lahn BT.

Genomics. 2006 Mar;87(3):433-6. Epub 2005 Nov 21.

27.

Three-dimensional structure and evolution of primate primary visual cortex.

Bush EC, Allman JM.

Anat Rec A Discov Mol Cell Evol Biol. 2004 Nov;281(1):1088-94.

29.

The scaling of frontal cortex in primates and carnivores.

Bush EC, Allman JM.

Proc Natl Acad Sci U S A. 2004 Mar 16;101(11):3962-6. Epub 2004 Mar 8.

30.

The scaling of white matter to gray matter in cerebellum and neocortex.

Bush EC, Allman JM.

Brain Behav Evol. 2003;61(1):1-5.

PMID:
12626858
31.

Pharmacokinetics, toxicokinetics, distribution, metabolism and excretion of linezolid in mouse, rat and dog.

Slatter JG, Adams LA, Bush EC, Chiba K, Daley-Yates PT, Feenstra KL, Koike S, Ozawa N, Peng GW, Sams JP, Schuette MR, Yamazaki S.

Xenobiotica. 2002 Oct;32(10):907-24.

PMID:
12419019
32.

Rapid long lasting learning in a collinear edge-detection task.

Bush EC, Shimojo S, Allman JM.

Perception. 2002;31(7):791-8.

PMID:
12206527
33.

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