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Position effects on promoter activity in Escherichia coli and their consequences for antibiotic-resistance determinants.

Cooke K, Browning DF, Lee DJ, Blair JMA, McNeill HE, Huber D, Busby SJW, Bryant JA.

Biochem Soc Trans. 2019 Jun 12. pii: BST20180503. doi: 10.1042/BST20180503. [Epub ahead of print] Review.


Barriers to Reproductive Healthcare for Women With Opioid Use Disorder.

Smith C, Morse E, Busby S.

J Perinat Neonatal Nurs. 2019 Apr/Jun;33(2):E3-E11. doi: 10.1097/JPN.0000000000000401.


Bacterial Transcription Factors: Regulation by Pick "N" Mix.

Browning DF, Butala M, Busby SJW.

J Mol Biol. 2019 Apr 16. pii: S0022-2836(19)30205-0. doi: 10.1016/j.jmb.2019.04.011. [Epub ahead of print] Review.


Exploitation of the Escherichia coli lac operon promoter for controlled recombinant protein production.

Browning DF, Godfrey RE, Richards KL, Robinson C, Busby SJW.

Biochem Soc Trans. 2019 Apr 30;47(2):755-763. doi: 10.1042/BST20190059. Epub 2019 Apr 10. Review.


DNA barcodes for rapid, whole genome, single-molecule analyses.

Wand NO, Smith DA, Wilkinson AA, Rushton AE, Busby SJW, Styles IB, Neely RK.

Nucleic Acids Res. 2019 Mar 28. pii: gkz212. doi: 10.1093/nar/gkz212. [Epub ahead of print]


Transcription activation in bacteria: ancient and modern.

Busby SJW.

Microbiology. 2019 Apr;165(4):386-395. doi: 10.1099/mic.0.000783. Epub 2019 Feb 18.


Oxygen and contact with human intestinal epithelium independently stimulate virulence gene expression in enteroaggregative Escherichia coli.

Ellis SJ, Yasir M, Browning DF, Busby SJW, Schüller S.

Cell Microbiol. 2019 Jun;21(6):e13012. doi: 10.1111/cmi.13012. Epub 2019 Feb 15.


Draft Genome Sequences of Nine Vibrio sp. Isolates from across the United States Closely Related to Vibrio cholerae.

Islam MT, Liang K, Im MS, Winkjer J, Busby S, Tarr CL, Boucher Y.

Microbiol Resour Announc. 2018 Nov 29;7(21). pii: e00965-18. doi: 10.1128/MRA.00965-18. eCollection 2018 Nov.


Organization and architecture of AggR-dependent promoters from enteroaggregative Escherichia coli.

Yasir M, Icke C, Abdelwahab R, Haycocks JR, Godfrey RE, Sazinas P, Pallen MJ, Henderson IR, Busby SJW, Browning DF.

Mol Microbiol. 2019 Feb;111(2):534-551. doi: 10.1111/mmi.14172. Epub 2018 Dec 18.


A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0.

Santos-Zavaleta A, Sánchez-Pérez M, Salgado H, Velázquez-Ramírez DA, Gama-Castro S, Tierrafría VH, Busby SJW, Aquino P, Fang X, Palsson BO, Galagan JE, Collado-Vides J.

BMC Biol. 2018 Aug 16;16(1):91. doi: 10.1186/s12915-018-0555-y.


Structure based design of nicotinamide phosphoribosyltransferase (NAMPT) inhibitors from a phenotypic screen.

Palacios DS, Meredith E, Kawanami T, Adams C, Chen X, Darsigny V, Geno E, Palermo M, Baird D, Boynton G, Busby SA, George EL, Guy C, Hewett J, Tierney L, Thigale S, Weihofen W, Wang L, White N, Yin M, Argikar UA.

Bioorg Med Chem Lett. 2018 Feb 1;28(3):365-370. doi: 10.1016/j.bmcl.2017.12.037. Epub 2017 Dec 18.


Escherichia coli "TatExpress" strains super-secrete human growth hormone into the bacterial periplasm by the Tat pathway.

Browning DF, Richards KL, Peswani AR, Roobol J, Busby SJW, Robinson C.

Biotechnol Bioeng. 2017 Dec;114(12):2828-2836. doi: 10.1002/bit.26434. Epub 2017 Oct 6.


Development of a new fluorescent reporter:operator system: location of AraC regulated genes in Escherichia coli K-12.

Sellars LE, Bryant JA, Sánchez-Romero MA, Sánchez-Morán E, Busby SJW, Lee DJ.

BMC Microbiol. 2017 Aug 3;17(1):170. doi: 10.1186/s12866-017-1079-2.


Tracking Low-Copy Transcription Factors in Living Bacteria: The Case of the lac Repressor.

Garza de Leon F, Sellars L, Stracy M, Busby SJW, Kapanidis AN.

Biophys J. 2017 Apr 11;112(7):1316-1327. doi: 10.1016/j.bpj.2017.02.028.


Regulation of nrf operon expression in pathogenic enteric bacteria: sequence divergence reveals new regulatory complexity.

Godfrey RE, Lee DJ, Busby SJW, Browning DF.

Mol Microbiol. 2017 May;104(4):580-594. doi: 10.1111/mmi.13647. Epub 2017 Mar 1.


Regulation, sensory domains and roles of two Desulfovibrio desulfuricans ATCC27774 Crp family transcription factors, HcpR1 and HcpR2, in response to nitrosative stress.

Cadby IT, Ibrahim SA, Faulkner M, Lee DJ, Browning D, Busby SJ, Lovering AL, Stapleton MR, Green J, Cole JA.

Mol Microbiol. 2016 Dec;102(6):1120-1137. doi: 10.1111/mmi.13540. Epub 2016 Oct 20.


RNA polymerase supply and flux through the lac operon in Escherichia coli.

Sendy B, Lee DJ, Busby SJ, Bryant JA.

Philos Trans R Soc Lond B Biol Sci. 2016 Nov 5;371(1707). pii: 20160080. doi: 10.1098/rstb.2016.0080.


The new bacteriology.

Cossart P, Holden D, Busby S.

Philos Trans R Soc Lond B Biol Sci. 2016 Nov 5;371(1707). pii: 20150507. doi: 10.1098/rstb.2015.0507. No abstract available.


Matrix-Based Activity Pattern Classification as a Novel Method for the Characterization of Enzyme Inhibitors Derived from High-Throughput Screening.

Auld DS, Jimenez M, Yue K, Busby S, Chen YC, Bowes S, Wendel G, Smith T, Zhang JH.

J Biomol Screen. 2016 Dec;21(10):1075-1089. doi: 10.1177/1087057116667255. Epub 2016 Sep 27.


Local and global regulation of transcription initiation in bacteria.

Browning DF, Busby SJ.

Nat Rev Microbiol. 2016 Oct;14(10):638-50. doi: 10.1038/nrmicro.2016.103. Epub 2016 Aug 8. Review.


Design, Synthesis, and Biological Evaluation of Indole Biphenylcarboxylic Acids as PPARγ Antagonists.

Asteian A, Blayo AL, He Y, Koenig M, Shin Y, Kuruvilla DS, Corzo CA, Cameron MD, Lin L, Ruiz C, Khan S, Kumar N, Busby S, Marciano DP, Garcia-Ordonez RD, Griffin PR, Kamenecka TM.

ACS Med Chem Lett. 2015 Aug 4;6(9):998-1003. doi: 10.1021/acsmedchemlett.5b00218. eCollection 2015 Sep 10.


Silencing of DNase Colicin E8 Gene Expression by a Complex Nucleoprotein Assembly Ensures Timely Colicin Induction.

Kamenšek S, Browning DF, Podlesek Z, Busby SJ, Žgur-Bertok D, Butala M.

PLoS Genet. 2015 Jun 26;11(6):e1005354. doi: 10.1371/journal.pgen.1005354. eCollection 2015 Jun.


Evolution of bacterial transcription factors: how proteins take on new tasks, but do not always stop doing the old ones.

Visweswariah SS, Busby SJ.

Trends Microbiol. 2015 Aug;23(8):463-7. doi: 10.1016/j.tim.2015.04.009. Epub 2015 May 20. Review.


Assessing patient awareness of proper hand hygiene.

Busby SR, Kennedy B, Davis SC, Thompson HA, Jones JW.

Nursing. 2015 May;45(5):27-30. doi: 10.1097/01.NURSE.0000463667.76100.06.


Host attachment and fluid shear are integrated into a mechanical signal regulating virulence in Escherichia coli O157:H7.

Alsharif G, Ahmad S, Islam MS, Shah R, Busby SJ, Krachler AM.

Proc Natl Acad Sci U S A. 2015 Apr 28;112(17):5503-8. doi: 10.1073/pnas.1422986112. Epub 2015 Apr 13.


Expression of different bacterial cytotoxins is controlled by two global transcription factors, CRP and Fis, that co-operate in a shared-recruitment mechanism.

Rossiter AE, Godfrey RE, Connolly JA, Busby SJ, Henderson IR, Browning DF.

Biochem J. 2015 Mar 1;466(2):323-35. doi: 10.1042/BJ20141315.


Acute peripheral vestibulopathy in a cocaine addict: Cracking the vestibular nucleus.

Feyissa AM, Masel T, Busby SP.

Neurol Clin Pract. 2014 Dec;4(6):532-533. doi: 10.1212/CPJ.0000000000000057. No abstract available.


Identifying initiation and elongation inhibitors of dengue virus RNA polymerase in a high-throughput lead-finding campaign.

Smith TM, Lim SP, Yue K, Busby SA, Arora R, Seh CC, Wright SK, Nutiu R, Niyomrattanakit P, Wan KF, Beer D, Shi PY, Benson TE.

J Biomol Screen. 2015 Jan;20(1):153-63. doi: 10.1177/1087057114551141. Epub 2014 Sep 24.


Chromosome position effects on gene expression in Escherichia coli K-12.

Bryant JA, Sellars LE, Busby SJ, Lee DJ.

Nucleic Acids Res. 2014 Oct;42(18):11383-92. doi: 10.1093/nar/gku828. Epub 2014 Sep 10.


Spacing requirements for Class I transcription activation in bacteria are set by promoter elements.

Zhou Y, Kolb A, Busby SJ, Wang YP.

Nucleic Acids Res. 2014 Aug;42(14):9209-16. doi: 10.1093/nar/gku625. Epub 2014 Jul 17.


Microarray analysis of the Ler regulon in enteropathogenic and enterohaemorrhagic Escherichia coli strains.

Bingle LE, Constantinidou C, Shaw RK, Islam MS, Patel M, Snyder LA, Lee DJ, Penn CW, Busby SJ, Pallen MJ.

PLoS One. 2014 Jan 14;9(1):e80160. doi: 10.1371/journal.pone.0080160. eCollection 2014.


Activation of AMP-activated protein kinase revealed by hydrogen/deuterium exchange mass spectrometry.

Landgraf RR, Goswami D, Rajamohan F, Harris MS, Calabrese MF, Hoth LR, Magyar R, Pascal BD, Chalmers MJ, Busby SA, Kurumbail RG, Griffin PR.

Structure. 2013 Nov 5;21(11):1942-53. doi: 10.1016/j.str.2013.08.023. Epub 2013 Sep 26.


Antibiotic susceptibility and resistance of Staphylococcus aureus isolated from fresh porcine skin xenografts: risk to recipients with thermal injury.

Busby SA, Robb A, Lang S, Takeuchi Y, Vesely P, Scobie L.

Burns. 2014 Mar;40(2):288-94. doi: 10.1016/j.burns.2013.06.006. Epub 2013 Jul 10.


Identification of a novel selective inverse agonist probe and analogs for the Retinoic acid receptor-related Orphan Receptor Alpha (RORα).

Kumar N, Nuhant P, Solt LA, Conkright JJ, Wang Y, Istrate MA, Busby SA, Ruben DGO, Burris TP, Cameron M, Mercer BA, Hodder P, Roush WR, Rosen H, Griffin PR.

Probe Reports from the NIH Molecular Libraries Program [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2010-.
2010 Sep 1 [updated 2013 Mar 14].


Potent Anti-Diabetic Actions of a Novel Non-Agonist PPARγ Ligand that Blocks Cdk5-Mediated Phosphorylation.

Kamenecka TM, Busby SA, Kumar N, Choi JH, Banks AS, Vidovic D, Cameron MD, Schurer SC, Mercer BA, Hodder P, Spiegelman BM, Griffin PR.

Probe Reports from the NIH Molecular Libraries Program [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2010-.
2011 Jul 5 [updated 2013 Mar 7].


Suggestions for the diagnosis and elimination of hepatitis E virus in pigs used for xenotransplantation.

Busby SA, Crossan C, Godwin J, Petersen B, Galli C, Cozzi E, Takeuchi Y, Scobie L.

Xenotransplantation. 2013 May-Jun;20(3):188-92. doi: 10.1111/xen.12038. Epub 2013 May 7.


Genetic inactivation of acrAB or inhibition of efflux induces expression of ramA.

Lawler AJ, Ricci V, Busby SJ, Piddock LJ.

J Antimicrob Chemother. 2013 Jul;68(7):1551-7. doi: 10.1093/jac/dkt069. Epub 2013 Mar 14.


Discovery of Inverse Agonists for the Liver Receptor Homologue-1 (LRH1; NR5A2).

Busby S, Nuhant P, Cameron M, Mercer BA, Hodder P, Roush WR, Griffin PR.

Probe Reports from the NIH Molecular Libraries Program [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2010-.
2010 Oct 12 [updated 2011 Dec 12].


Two DNA sites for MelR in the same orientation are sufficient for optimal MelR-dependent repression at the Escherichia coli melR promoter.

Elrobh MS, Webster CL, Samarasinghe S, Durose D, Busby SJ.

FEMS Microbiol Lett. 2013 Jan;338(1):62-7. doi: 10.1111/1574-6968.12027. Epub 2012 Nov 8.


Repression by cyclic AMP receptor protein at a distance.

Lee DJ, Busby SJ.

MBio. 2012 Sep 11;3(5):e00289-12. doi: 10.1128/mBio.00289-12. Print 2012.


Regulation of RamA by RamR in Salmonella enterica serovar Typhimurium: isolation of a RamR superrepressor.

Ricci V, Busby SJ, Piddock LJ.

Antimicrob Agents Chemother. 2012 Nov;56(11):6037-40. doi: 10.1128/AAC.01320-12. Epub 2012 Sep 4.


Preparation of 3-bromo-L-tyrosine and 3,5-dibromo-L-tyrosine.

Phillips RS, Busby S, Edenfield L, Wickware K.

Amino Acids. 2013 Feb;44(2):529-32. doi: 10.1007/s00726-012-1366-z. Epub 2012 Jul 27.


Double locking of an Escherichia coli promoter by two repressors prevents premature colicin expression and cell lysis.

Butala M, Sonjak S, Kamenšek S, Hodošček M, Browning DF, Žgur-Bertok D, Busby SJ.

Mol Microbiol. 2012 Oct;86(1):129-39. doi: 10.1111/j.1365-2958.2012.08179.x. Epub 2012 Aug 13.


Activating transcription in bacteria.

Lee DJ, Minchin SD, Busby SJ.

Annu Rev Microbiol. 2012;66:125-52. doi: 10.1146/annurev-micro-092611-150012. Epub 2012 Jun 15. Review.


Targeting orphan nuclear receptors for treatment of metabolic diseases and autoimmunity.

Burris TP, Busby SA, Griffin PR.

Chem Biol. 2012 Jan 27;19(1):51-9. doi: 10.1016/j.chembiol.2011.12.011. Review.


Amygdala afferents monosynaptically innervate corticospinal neurons in rat medial prefrontal cortex.

Gabbott P, Warner TA, Brown J, Salway P, Gabbott T, Busby S.

J Comp Neurol. 2012 Aug 1;520(11):2440-58. doi: 10.1002/cne.23047.


Location and dynamics of an active promoter in Escherichia coli K-12.

Sánchez-Romero MA, Lee DJ, Sánchez-Morán E, Busby SJ.

Biochem J. 2012 Jan 1;441(1):481-5. doi: 10.1042/BJ20111258.


Antidiabetic actions of a non-agonist PPARγ ligand blocking Cdk5-mediated phosphorylation.

Choi JH, Banks AS, Kamenecka TM, Busby SA, Chalmers MJ, Kumar N, Kuruvilla DS, Shin Y, He Y, Bruning JB, Marciano DP, Cameron MD, Laznik D, Jurczak MJ, Schürer SC, Vidović D, Shulman GI, Spiegelman BM, Griffin PR.

Nature. 2011 Sep 4;477(7365):477-81. doi: 10.1038/nature10383.


Theory development for situational awareness in multi-casualty incidents.

Busby S, Witucki-Brown J.

J Emerg Nurs. 2011 Sep;37(5):444-52. doi: 10.1016/j.jen.2010.07.023. Epub 2010 Sep 21.


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