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Items: 1 to 50 of 59

1.

NovoGraph: Human genome graph construction from multiple long-read de novo assemblies.

Biederstedt E, Oliver JC, Hansen NF, Jajoo A, Dunn N, Olson A, Busby B, Dilthey AT.

Version 2. F1000Res. 2018 Sep 3 [revised 2018 Jan 1];7:1391. doi: 10.12688/f1000research.15895.2. eCollection 2018.

2.

Reply to the paper: Misunderstood parameters of NCBI BLAST impacts the correctness of bioinformatics workflows.

Madden TL, Busby B, Ye J.

Bioinformatics. 2018 Dec 24. doi: 10.1093/bioinformatics/bty1026. [Epub ahead of print] No abstract available.

PMID:
30590429
3.

A resource of variant effect predictions of single nucleotide variants in model organisms.

Wagih O, Galardini M, Busby BP, Memon D, Typas A, Beltrao P.

Mol Syst Biol. 2018 Dec 20;14(12):e8430. doi: 10.15252/msb.20188430.

4.

Matchmaking in Bioinformatics.

Mathé E, Busby B, Piontkivska H; Team of Developers.

F1000Res. 2018 Feb 9;7. pii: ISCB Comm J-171. doi: 10.12688/f1000research.13705.1. eCollection 2018.

5.

PubRunner: A light-weight framework for updating text mining results.

Anekalla KR, Courneya JP, Fiorini N, Lever J, Muchow M, Busby B.

Version 2. F1000Res. 2017 May 2 [revised 2017 Jan 1];6:612. doi: 10.12688/f1000research.11389.2. eCollection 2017.

6.

Viewing RNA-seq data on the entire human genome.

Weitz EM, Pantano L, Zhu J, Upton B, Busby B.

F1000Res. 2017 Apr 28;6:596. doi: 10.12688/f1000research.9762.1. eCollection 2017.

7.

Extending TCGA queries to automatically identify analogous genomic data from dbGaP.

Wagner EK, Raje S, Amos L, Kurata J, Badve AS, Li Y, Busby B.

F1000Res. 2017 Mar 24;6:319. doi: 10.12688/f1000research.9837.1. eCollection 2017.

8.

DangerTrack: A scoring system to detect difficult-to-assess regions.

Dolgalev I, Sedlazeck F, Busby B.

F1000Res. 2017 Apr 7;6:443. doi: 10.12688/f1000research.11254.1. eCollection 2017.

9.

dbVar structural variant cluster set for data analysis and variant comparison.

Phan L, Hsu J, Tri LQ, Willi M, Mansour T, Kai Y, Garner J, Lopez J, Busby B.

Version 2. F1000Res. 2016 Apr 13 [revised 2017 Jan 1];5:673. doi: 10.12688/f1000research.8290.2. eCollection 2016.

10.

Photography in Telemedicine: Improving Diagnosis of Chronic Graft-Versus-Host Disease.

Busby B, Campbell S, Cole R, DeVries C, Dobbins K, Trimble MB, Wickline M.

Clin J Oncol Nurs. 2017 Feb 1;21(1):86-92. doi: 10.1188/17.CJON.86-92. Review.

PMID:
28107317
11.

Managing Sequence Data.

O'Sullivan C, Busby B, Mizrachi IK.

Methods Mol Biol. 2017;1525:79-106.

PMID:
27896718
12.

MetaNetVar: Pipeline for applying network analysis tools for genomic variants analysis.

Moyer E, Hagenauer M, Lesko M, Francis F, Rodriguez O, Nagarajan V, Huser V, Busby B.

F1000Res. 2016 Apr 13;5:674. doi: 10.12688/f1000research.8288.1. eCollection 2016.

13.

Closing gaps between open software and public data in a hackathon setting: User-centered software prototyping.

Busby B, Lesko M; August 2015 and January 2016 Hackathon participants, Federer L.

Version 2. F1000Res. 2016 Apr 13 [revised 2016 Jan 1];5:672. doi: 10.12688/f1000research.8382.2. eCollection 2016.

14.

Mitogen-activated protein kinase signaling causes malignant melanoma cells to differentially alter extracellular matrix biosynthesis to promote cell survival.

Afasizheva A, Devine A, Tillman H, Fung KL, Vieira WD, Blehm BH, Kotobuki Y, Busby B, Chen EI, Tanner K.

BMC Cancer. 2016 Mar 5;16:186. doi: 10.1186/s12885-016-2211-7.

15.

Effect of domestication on the spread of the [PIN+] prion in Saccharomyces cerevisiae.

Kelly AC, Busby B, Wickner RB.

Genetics. 2014 Jul;197(3):1007-24. doi: 10.1534/genetics.114.165670. Epub 2014 May 8.

16.

Clinical validation and implementation of a multiplexed immunosuppressant assay in dried blood spots by LC-MS/MS.

Sadilkova K, Busby B, Dickerson JA, Rutledge JC, Jack RM.

Clin Chim Acta. 2013 Jun 5;421:152-6. doi: 10.1016/j.cca.2013.02.009. Epub 2013 Mar 5.

PMID:
23473895
17.

Contribution of phage-derived genomic islands to the virulence of facultative bacterial pathogens.

Busby B, Kristensen DM, Koonin EV.

Environ Microbiol. 2013 Feb;15(2):307-12. doi: 10.1111/j.1462-2920.2012.02886.x. Epub 2012 Oct 4.

18.

Hydrophobic residues in small ankyrin 1 participate in binding to obscurin.

Willis CD, Oashi T, Busby B, Mackerell AD Jr, Bloch RJ.

Mol Membr Biol. 2012 Mar;29(2):36-51. doi: 10.3109/09687688.2012.660709.

19.

Molecular basis for fungicidal action of neothyonidioside, a triterpene glycoside from the sea cucumber, Australostichopus mollis.

Yibmantasiri P, Leahy DC, Busby BP, Angermayr SA, Sorgo AG, Boeger K, Heathcott R, Barber JM, Moraes G, Matthews JH, Northcote PT, Atkinson PH, Bellows DS.

Mol Biosyst. 2012 Mar;8(3):902-12. doi: 10.1039/c2mb05426d. Epub 2012 Jan 25.

PMID:
22271309
20.

Electrostatic interactions mediate binding of obscurin to small ankyrin 1: biochemical and molecular modeling studies.

Busby B, Oashi T, Willis CD, Ackermann MA, Kontrogianni-Konstantopoulos A, Mackerell AD Jr, Bloch RJ.

J Mol Biol. 2011 Apr 29;408(2):321-34. doi: 10.1016/j.jmb.2011.01.053. Epub 2011 Feb 17.

21.

Characterization and comparison of two binding sites on obscurin for small ankyrin 1.

Busby B, Willis CD, Ackermann MA, Kontrogianni-Konstantopoulos A, Bloch RJ.

Biochemistry. 2010 Nov 23;49(46):9948-56. doi: 10.1021/bi101165p. Epub 2010 Nov 1.

22.

Oral administration of pyrrolidine dithiocarbamate (PDTC) inhibits VEGF expression, tumor angiogenesis, and growth of breast cancer in female mice.

Gu JW, Young E, Busby B, Covington J, Johnson JW.

Cancer Biol Ther. 2009 Mar 15;8(6):514-21. doi: 10.4161/cbt.8.6.7689. Epub 2009 Mar 15.

PMID:
19242105
23.

A global benchmark study using affinity-based biosensors.

Rich RL, Papalia GA, Flynn PJ, Furneisen J, Quinn J, Klein JS, Katsamba PS, Waddell MB, Scott M, Thompson J, Berlier J, Corry S, Baltzinger M, Zeder-Lutz G, Schoenemann A, Clabbers A, Wieckowski S, Murphy MM, Page P, Ryan TE, Duffner J, Ganguly T, Corbin J, Gautam S, Anderluh G, Bavdek A, Reichmann D, Yadav SP, Hommema E, Pol E, Drake A, Klakamp S, Chapman T, Kernaghan D, Miller K, Schuman J, Lindquist K, Herlihy K, Murphy MB, Bohnsack R, Andrien B, Brandani P, Terwey D, Millican R, Darling RJ, Wang L, Carter Q, Dotzlaf J, Lopez-Sagaseta J, Campbell I, Torreri P, Hoos S, England P, Liu Y, Abdiche Y, Malashock D, Pinkerton A, Wong M, Lafer E, Hinck C, Thompson K, Primo CD, Joyce A, Brooks J, Torta F, Bagge Hagel AB, Krarup J, Pass J, Ferreira M, Shikov S, Mikolajczyk M, Abe Y, Barbato G, Giannetti AM, Krishnamoorthy G, Beusink B, Satpaev D, Tsang T, Fang E, Partridge J, Brohawn S, Horn J, Pritsch O, Obal G, Nilapwar S, Busby B, Gutierrez-Sanchez G, Gupta RD, Canepa S, Witte K, Nikolovska-Coleska Z, Cho YH, D'Agata R, Schlick K, Calvert R, Munoz EM, Hernaiz MJ, Bravman T, Dines M, Yang MH, Puskas A, Boni E, Li J, Wear M, Grinberg A, Baardsnes J, Dolezal O, Gainey M, Anderson H, Peng J, Lewis M, Spies P, Trinh Q, Bibikov S, Raymond J, Yousef M, Chandrasekaran V, Feng Y, Emerick A, Mundodo S, Guimaraes R, McGirr K, Li YJ, Hughes H, Mantz H, Skrabana R, Witmer M, Ballard J, Martin L, Skladal P, Korza G, Laird-Offringa I, Lee CS, Khadir A, Podlaski F, Neuner P, Rothacker J, Rafique A, Dankbar N, Kainz P, Gedig E, Vuyisich M, Boozer C, Ly N, Toews M, Uren A, Kalyuzhniy O, Lewis K, Chomey E, Pak BJ, Myszka DG.

Anal Biochem. 2009 Mar 15;386(2):194-216. doi: 10.1016/j.ab.2008.11.021. Epub 2008 Nov 27.

24.

Chronic alcohol consumption stimulates VEGF expression, tumor angiogenesis and progression of melanoma in mice.

Tan W, Bailey AP, Shparago M, Busby B, Covington J, Johnson JW, Young E, Gu JW.

Cancer Biol Ther. 2007 Aug;6(8):1211-7. Epub 2007 May 8.

PMID:
17660711
25.

Wisconsin's environmental public health tracking network: information systems design for childhood cancer surveillance.

Hanrahan LP, Anderson HA, Busby B, Bekkedal M, Sieger T, Stephenson L, Knobeloch L, Werner M, Imm P, Olson J.

Environ Health Perspect. 2004 Oct;112(14):1434-9.

26.

The Evolution of a Radiation Safety Audit Program for a Research Institution.

Gillette D, Campbell P, Busby B.

Health Phys. 2004 May;86 Suppl 2:S80-S84.

PMID:
28121695
27.

The evolution of a radiation safety audit program for a research institution.

Gillette D, Campbell P, Busby B.

Health Phys. 2004 May;86(5 Suppl):S80-4.

PMID:
15069294
28.

Long-term stability of surgical class III treatment: a study of 5-year postsurgical results.

Busby BR, Bailey LJ, Proffit WR, Phillips C, White RP Jr.

Int J Adult Orthodon Orthognath Surg. 2002 Fall;17(3):159-70.

PMID:
12353934
29.

Radiation information and resources on-line.

Busby B.

Toxicology. 2002 Apr 25;173(1-2):167-78. Review. No abstract available.

PMID:
11955692
30.

Update on Internet use.

Busby B.

Health Phys. 2002 Jan;82(1):2-3. No abstract available.

PMID:
11768795
31.

Niche rad use.

Busby B.

Health Phys. 2001 Sep;81(3):244-5. No abstract available.

PMID:
11513455
32.

Future of the Web.

Busby B.

Health Phys. 2001 Feb;80(2):109. No abstract available.

PMID:
11197457
33.

News on the Net, 5 years later.

Busby B.

Health Phys. 2000 Dec;79(6):663. No abstract available.

PMID:
11089801
34.

Solar activity.

Busby B.

Health Phys. 2000 Nov;79(5):465. No abstract available.

PMID:
11045521
35.

What's new for regulations?

Busby B.

Health Phys. 2000 Sep;79(3):233. No abstract available.

PMID:
10949246
36.

Nuclear medicine and radiopharmaceuticals.

Busby B.

Health Phys. 2000 Aug;79(2):117. No abstract available.

PMID:
10910378
37.

Uranium.

Busby B.

Health Phys. 2000 May;78(5):473. No abstract available.

PMID:
10772017
38.

Virus problems.

Busby B.

Health Phys. 2000 Mar;78(3):255-6. No abstract available.

PMID:
10688446
39.

What's new?

Busby B.

Health Phys. 1999 Nov;77(5):503-4. No abstract available.

PMID:
10524502
40.

Radon.

Busby B.

Health Phys. 1999 Oct;77(4):357-8. No abstract available.

PMID:
10492340
41.

Changes for Health Physics On-Line.

Busby B.

Health Phys. 1999 Jul;77(1):3-4. No abstract available.

PMID:
10376534
42.

More on-line publishing.

Busby B.

Health Phys. 1999 Jun;76(6):604. No abstract available.

PMID:
10334575
43.

Decommissioning of radiological facilities.

Busby B.

Health Phys. 1999 May;76(5):473-4. No abstract available.

PMID:
10201558
44.

E-mail attachment problems.

Busby B.

Health Phys. 1999 Apr;76(4):347-8. No abstract available.

PMID:
10086594
45.

Making web pages.

Busby B.

Health Phys. 1999 Mar;76(3):236-7. No abstract available.

PMID:
10025646
46.

Nuclear power on-line.

Busby B.

Health Phys. 1999 Feb;76(2):103-4. No abstract available.

PMID:
9929120
47.

Year 2000 issues.

Busby B.

Health Phys. 1998 Dec;75(6):570-1. No abstract available.

PMID:
9827502
48.

Handling problems on-line.

Busby B.

Health Phys. 1998 Nov;75(5):463-4. No abstract available.

PMID:
9790553
49.

Using the Internet--an example.

Busby B.

Health Phys. 1998 Oct;75(4):353-4. No abstract available.

PMID:
9753356
50.

New on-line.

Busby B.

Health Phys. 1998 Sep;75(3):235. No abstract available.

PMID:
9721830

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