Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 195

1.

Computational analysis of the evolutionarily conserved Missing In Metastasis/Metastasis Suppressor 1 gene predicts novel interactions, regulatory regions and transcriptional control.

Petrov P, Sarapulov AV, Eöry L, Scielzo C, Scarfò L, Smith J, Burt DW, Mattila PK.

Sci Rep. 2019 Mar 11;9(1):4155. doi: 10.1038/s41598-019-40697-1.

2.

Molecular Mechanisms for the Adaptive Switching Between the OAS/RNase L and OASL/RIG-I Pathways in Birds and Mammals.

Rong E, Wang X, Chen H, Yang C, Hu J, Liu W, Wang Z, Chen X, Zheng H, Pu J, Sun H, Smith J, Burt DW, Liu J, Li N, Huang Y.

Front Immunol. 2018 Jun 20;9:1398. doi: 10.3389/fimmu.2018.01398. eCollection 2018.

3.

Toll-like receptor evolution in birds: gene duplication, pseudogenisation and diversifying selection.

Velová H, Gutowska-Ding MW, Burt DW, Vinkler M.

Mol Biol Evol. 2018 Jun 8. doi: 10.1093/molbev/msy119. [Epub ahead of print]

4.

Population genomic data reveal genes related to important traits of quail.

Wu Y, Zhang Y, Hou Z, Fan G, Pi J, Sun S, Chen J, Liu H, Du X, Shen J, Hu G, Chen W, Pan A, Yin P, Chen X, Pu Y, Zhang H, Liang Z, Jian J, Zhang H, Wu B, Sun J, Chen J, Tao H, Yang T, Xiao H, Yang H, Zheng C, Bai M, Fang X, Burt DW, Wang W, Li Q, Xu X, Li C, Yang H, Wang J, Yang N, Liu X, Du J.

Gigascience. 2018 May 1;7(5). doi: 10.1093/gigascience/giy049.

5.

Chicken genomics.

Cheng Y, Burt DW.

Int J Dev Biol. 2018;62(1-2-3):265-271. doi: 10.1387/ijdb.170276yc. Review.

6.

Chicken anaemia virus evades host immune responses in transformed lymphocytes.

Giotis ES, Scott A, Rothwell L, Hu T, Talbot R, Todd D, Burt DW, Glass EJ, Kaiser P.

J Gen Virol. 2018 Feb 6. doi: 10.1099/jgv.0.001011. [Epub ahead of print]

7.

Correction to: Mapping of leptin and its syntenic genes to chicken chromosome 1p.

Seroussi E, Pitel F, Leroux S, Morisson M, Bornelöv S, Miyara S, Yosefi S, Cogburn LA, Burt DW, Andersson L, Friedman-Einat M.

BMC Genet. 2017 Dec 15;18(1):113. doi: 10.1186/s12863-017-0587-2.

8.
9.

Mapping of leptin and its syntenic genes to chicken chromosome 1p.

Seroussi E, Pitel F, Leroux S, Morisson M, Bornelöv S, Miyara S, Yosefi S, Cogburn LA, Burt DW, Anderson L, Friedman-Einat M.

BMC Genet. 2017 Aug 9;18(1):77. doi: 10.1186/s12863-017-0543-1. Erratum in: BMC Genet. 2017 Dec 15;18(1):113.

10.

Normalized long read RNA sequencing in chicken reveals transcriptome complexity similar to human.

Kuo RI, Tseng E, Eory L, Paton IR, Archibald AL, Burt DW.

BMC Genomics. 2017 Apr 24;18(1):323. doi: 10.1186/s12864-017-3691-9.

11.

A New Chicken Genome Assembly Provides Insight into Avian Genome Structure.

Warren WC, Hillier LW, Tomlinson C, Minx P, Kremitzki M, Graves T, Markovic C, Bouk N, Pruitt KD, Thibaud-Nissen F, Schneider V, Mansour TA, Brown CT, Zimin A, Hawken R, Abrahamsen M, Pyrkosz AB, Morisson M, Fillon V, Vignal A, Chow W, Howe K, Fulton JE, Miller MM, Lovell P, Mello CV, Wirthlin M, Mason AS, Kuo R, Burt DW, Dodgson JB, Cheng HH.

G3 (Bethesda). 2017 Jan 5;7(1):109-117. doi: 10.1534/g3.116.035923.

12.

A new look at the LTR retrotransposon content of the chicken genome.

Mason AS, Fulton JE, Hocking PM, Burt DW.

BMC Genomics. 2016 Aug 30;17:688. doi: 10.1186/s12864-016-3043-1.

13.

A strategy to discover new organizers identifies a putative heart organizer.

Anderson C, Khan MAF, Wong F, Solovieva T, Oliveira NMM, Baldock RA, Tickle C, Burt DW, Stern CD.

Nat Commun. 2016 Aug 25;7:12656. doi: 10.1038/ncomms12656.

14.

Novel Insights into Chromosome Evolution in Birds, Archosaurs, and Reptiles.

Farré M, Narayan J, Slavov GT, Damas J, Auvil L, Li C, Jarvis ED, Burt DW, Griffin DK, Larkin DM.

Genome Biol Evol. 2016 Aug 25;8(8):2442-51. doi: 10.1093/gbe/evw166.

15.

Commercial chicken breeds exhibit highly divergent patterns of linkage disequilibrium.

Pengelly RJ, Gheyas AA, Kuo R, Mossotto E, Seaby EG, Burt DW, Ennis S, Collins A.

Heredity (Edinb). 2016 Nov;117(5):375-382. doi: 10.1038/hdy.2016.47. Epub 2016 Jul 6.

16.

Animal genomics and infectious disease resistance in poultry.

Smith J, Gheyas A, Burt DW.

Rev Sci Tech. 2016 Apr;35(1):105-19. doi: 10.20506/rst.35.1.2421. Review.

17.

Quantitative trait loci with sex-specific effects for internal organs weights and hematocrit value in a broiler-layer cross.

Moura AS, Ledur MC, Boschiero C, Nones K, Pinto LF, Jaenisch FR, Burt DW, Coutinho LL.

J Appl Genet. 2016 May;57(2):215-24. doi: 10.1007/s13353-015-0325-2. Epub 2015 Oct 24.

PMID:
26496990
18.

Genome-wide analysis reveals the extent of EAV-HP integration in domestic chicken.

Wragg D, Mason AS, Yu L, Kuo R, Lawal RA, Desta TT, Mwacharo JM, Cho CY, Kemp S, Burt DW, Hanotte O.

BMC Genomics. 2015 Oct 14;16:784. doi: 10.1186/s12864-015-1954-x.

19.

The early immune response to infection of chickens with Infectious Bronchitis Virus (IBV) in susceptible and resistant birds.

Smith J, Sadeyen JR, Cavanagh D, Kaiser P, Burt DW.

BMC Vet Res. 2015 Oct 9;11:256. doi: 10.1186/s12917-015-0575-6.

20.

Binary Switching of Calendar Cells in the Pituitary Defines the Phase of the Circannual Cycle in Mammals.

Wood SH, Christian HC, Miedzinska K, Saer BR, Johnson M, Paton B, Yu L, McNeilly J, Davis JR, McNeilly AS, Burt DW, Loudon AS.

Curr Biol. 2015 Oct 19;25(20):2651-62. doi: 10.1016/j.cub.2015.09.014. Epub 2015 Sep 24.

21.

Evolution of the avian β-defensin and cathelicidin genes.

Cheng Y, Prickett MD, Gutowska W, Kuo R, Belov K, Burt DW.

BMC Evol Biol. 2015 Sep 15;15:188. doi: 10.1186/s12862-015-0465-3.

22.

Third Report on Chicken Genes and Chromosomes 2015.

Schmid M, Smith J, Burt DW, Aken BL, Antin PB, Archibald AL, Ashwell C, Blackshear PJ, Boschiero C, Brown CT, Burgess SC, Cheng HH, Chow W, Coble DJ, Cooksey A, Crooijmans RP, Damas J, Davis RV, de Koning DJ, Delany ME, Derrien T, Desta TT, Dunn IC, Dunn M, Ellegren H, Eöry L, Erb I, Farré M, Fasold M, Fleming D, Flicek P, Fowler KE, Frésard L, Froman DP, Garceau V, Gardner PP, Gheyas AA, Griffin DK, Groenen MA, Haaf T, Hanotte O, Hart A, Häsler J, Hedges SB, Hertel J, Howe K, Hubbard A, Hume DA, Kaiser P, Kedra D, Kemp SJ, Klopp C, Kniel KE, Kuo R, Lagarrigue S, Lamont SJ, Larkin DM, Lawal RA, Markland SM, McCarthy F, McCormack HA, McPherson MC, Motegi A, Muljo SA, Münsterberg A, Nag R, Nanda I, Neuberger M, Nitsche A, Notredame C, Noyes H, O'Connor R, O'Hare EA, Oler AJ, Ommeh SC, Pais H, Persia M, Pitel F, Preeyanon L, Prieto Barja P, Pritchett EM, Rhoads DD, Robinson CM, Romanov MN, Rothschild M, Roux PF, Schmidt CJ, Schneider AS, Schwartz MG, Searle SM, Skinner MA, Smith CA, Stadler PF, Steeves TE, Steinlein C, Sun L, Takata M, Ulitsky I, Wang Q, Wang Y, Warren WC, Wood JM, Wragg D, Zhou H.

Cytogenet Genome Res. 2015;145(2):78-179. doi: 10.1159/000430927. Epub 2015 Jul 14. No abstract available.

23.

Transcriptomic Profiling of Virus-Host Cell Interactions following Chicken Anaemia Virus (CAV) Infection in an In Vivo Model.

Giotis ES, Rothwell L, Scott A, Hu T, Talbot R, Todd D, Burt DW, Glass EJ, Kaiser P.

PLoS One. 2015 Aug 5;10(8):e0134866. doi: 10.1371/journal.pone.0134866. eCollection 2015.

24.

A comparative analysis of host responses to avian influenza infection in ducks and chickens highlights a role for the interferon-induced transmembrane proteins in viral resistance.

Smith J, Smith N, Yu L, Paton IR, Gutowska MW, Forrest HL, Danner AF, Seiler JP, Digard P, Webster RG, Burt DW.

BMC Genomics. 2015 Aug 4;16:574. doi: 10.1186/s12864-015-1778-8.

25.

Detection and characterization of small insertion and deletion genetic variants in modern layer chicken genomes.

Boschiero C, Gheyas AA, Ralph HK, Eory L, Paton B, Kuo R, Fulton J, Preisinger R, Kaiser P, Burt DW.

BMC Genomics. 2015 Jul 31;16:562. doi: 10.1186/s12864-015-1711-1.

26.

Functional classification of 15 million SNPs detected from diverse chicken populations.

Gheyas AA, Boschiero C, Eory L, Ralph H, Kuo R, Woolliams JA, Burt DW.

DNA Res. 2015 Jun;22(3):205-17. doi: 10.1093/dnares/dsv005. Epub 2015 Apr 29.

27.

The development and maintenance of the mononuclear phagocyte system of the chick is controlled by signals from the macrophage colony-stimulating factor receptor.

Garceau V, Balic A, Garcia-Morales C, Sauter KA, McGrew MJ, Smith J, Vervelde L, Sherman A, Fuller TE, Oliphant T, Shelley JA, Tiwari R, Wilson TL, Chintoan-Uta C, Burt DW, Stevens MP, Sang HM, Hume DA.

BMC Biol. 2015 Feb 19;13:12. doi: 10.1186/s12915-015-0121-9.

28.

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project.

Andersson L, Archibald AL, Bottema CD, Brauning R, Burgess SC, Burt DW, Casas E, Cheng HH, Clarke L, Couldrey C, Dalrymple BP, Elsik CG, Foissac S, Giuffra E, Groenen MA, Hayes BJ, Huang LS, Khatib H, Kijas JW, Kim H, Lunney JK, McCarthy FM, McEwan JC, Moore S, Nanduri B, Notredame C, Palti Y, Plastow GS, Reecy JM, Rohrer GA, Sarropoulou E, Schmidt CJ, Silverstein J, Tellam RL, Tixier-Boichard M, Tosser-Klopp G, Tuggle CK, Vilkki J, White SN, Zhao S, Zhou H; FAANG Consortium.

Genome Biol. 2015 Mar 25;16:57. doi: 10.1186/s13059-015-0622-4.

29.

Characterization of the avian Trojan gene family reveals contrasting evolutionary constraints.

Petrov P, Syrjänen R, Smith J, Gutowska MW, Uchida T, Vainio O, Burt DW.

PLoS One. 2015 Mar 24;10(3):e0121672. doi: 10.1371/journal.pone.0121672. eCollection 2015.

30.

Phylogenomic analyses data of the avian phylogenomics project.

Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Alfaro-Núñez A, Narula N, Liu L, Burt D, Ellegren H, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G; Avian Phylogenomics Consortium.

Gigascience. 2015 Feb 12;4:4. doi: 10.1186/s13742-014-0038-1. eCollection 2015.

31.

Avianbase: a community resource for bird genomics.

Eöry L, Gilbert MT, Li C, Li B, Archibald A, Aken BL, Zhang G, Jarvis E, Flicek P, Burt DW.

Genome Biol. 2015 Jan 29;16:21. doi: 10.1186/s13059-015-0588-2.

32.

SNP and INDEL detection in a QTL region on chicken chromosome 2 associated with muscle deposition.

Godoy TF, Moreira GC, Boschiero C, Gheyas AA, Gasparin G, Paduan M, Andrade SC, Montenegro H, Burt DW, Ledur MC, Coutinho LL.

Anim Genet. 2015 Apr;46(2):158-63. doi: 10.1111/age.12271. Epub 2015 Feb 18.

PMID:
25690762
33.

Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment.

Li C, Zhang Y, Li J, Kong L, Hu H, Pan H, Xu L, Deng Y, Li Q, Jin L, Yu H, Chen Y, Liu B, Yang L, Liu S, Zhang Y, Lang Y, Xia J, He W, Shi Q, Subramanian S, Millar CD, Meader S, Rands CM, Fujita MK, Greenwold MJ, Castoe TA, Pollock DD, Gu W, Nam K, Ellegren H, Ho SY, Burt DW, Ponting CP, Jarvis ED, Gilbert MT, Yang H, Wang J, Lambert DM, Wang J, Zhang G.

Gigascience. 2014 Dec 12;3(1):27. doi: 10.1186/2047-217X-3-27. eCollection 2014.

34.

Variant discovery in a QTL region on chromosome 3 associated with fatness in chickens.

Moreira GC, Godoy TF, Boschiero C, Gheyas A, Gasparin G, Andrade SC, Paduan M, Montenegro H, Burt DW, Ledur MC, Coutinho LL.

Anim Genet. 2015 Apr;46(2):141-7. doi: 10.1111/age.12263. Epub 2015 Jan 23.

PMID:
25643900
35.

Cetaceans evolution: insights from the genome sequences of common minke whales.

Park JY, An YR, Kanda N, An CM, An HS, Kang JH, Kim EM, An DH, Jung H, Joung M, Park MH, Yoon SH, Lee BY, Lee T, Kim KW, Park WC, Shin DH, Lee YS, Kim J, Kwak W, Kim HJ, Kwon YJ, Moon S, Kim Y, Burt DW, Cho S, Kim H.

BMC Genomics. 2015 Jan 22;16:13. doi: 10.1186/s12864-015-1213-1.

36.

Analysis of the crow lung transcriptome in response to infection with highly pathogenic H5N1 avian influenza virus.

Vijayakumar P, Mishra A, Ranaware PB, Kolte AP, Kulkarni DD, Burt DW, Raut AA.

Gene. 2015 Mar 15;559(1):77-85. doi: 10.1016/j.gene.2015.01.016. Epub 2015 Jan 12.

PMID:
25592823
37.

Analysis of the early immune response to infection by infectious bursal disease virus in chickens differing in their resistance to the disease.

Smith J, Sadeyen JR, Butter C, Kaiser P, Burt DW.

J Virol. 2015 Mar;89(5):2469-82. doi: 10.1128/JVI.02828-14. Epub 2014 Dec 10.

38.

Comparative genomics reveals insights into avian genome evolution and adaptation.

Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, Wang Z, Jin L, Zhang P, Hu H, Yang W, Hu J, Xiao J, Yang Z, Liu Y, Xie Q, Yu H, Lian J, Wen P, Zhang F, Li H, Zeng Y, Xiong Z, Liu S, Zhou L, Huang Z, An N, Wang J, Zheng Q, Xiong Y, Wang G, Wang B, Wang J, Fan Y, da Fonseca RR, Alfaro-Núñez A, Schubert M, Orlando L, Mourier T, Howard JT, Ganapathy G, Pfenning A, Whitney O, Rivas MV, Hara E, Smith J, Farré M, Narayan J, Slavov G, Romanov MN, Borges R, Machado JP, Khan I, Springer MS, Gatesy J, Hoffmann FG, Opazo JC, Håstad O, Sawyer RH, Kim H, Kim KW, Kim HJ, Cho S, Li N, Huang Y, Bruford MW, Zhan X, Dixon A, Bertelsen MF, Derryberry E, Warren W, Wilson RK, Li S, Ray DA, Green RE, O'Brien SJ, Griffin D, Johnson WE, Haussler D, Ryder OA, Willerslev E, Graves GR, Alström P, Fjeldså J, Mindell DP, Edwards SV, Braun EL, Rahbek C, Burt DW, Houde P, Zhang Y, Yang H, Wang J; Avian Genome Consortium, Jarvis ED, Gilbert MT, Wang J.

Science. 2014 Dec 12;346(6215):1311-20. doi: 10.1126/science.1251385. Epub 2014 Dec 11.

39.

Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor.

Romanov MN, Farré M, Lithgow PE, Fowler KE, Skinner BM, O'Connor R, Fonseka G, Backström N, Matsuda Y, Nishida C, Houde P, Jarvis ED, Ellegren H, Burt DW, Larkin DM, Griffin DK.

BMC Genomics. 2014 Dec 11;15:1060. doi: 10.1186/1471-2164-15-1060.

40.

Visualisation of chicken macrophages using transgenic reporter genes: insights into the development of the avian macrophage lineage.

Balic A, Garcia-Morales C, Vervelde L, Gilhooley H, Sherman A, Garceau V, Gutowska MW, Burt DW, Kaiser P, Hume DA, Sang HM.

Development. 2014 Aug;141(16):3255-65. doi: 10.1242/dev.105593. Epub 2014 Jul 25.

41.

Major transcriptome re-organisation and abrupt changes in signalling, cell cycle and chromatin regulation at neural differentiation in vivo.

Olivera-Martinez I, Schurch N, Li RA, Song J, Halley PA, Das RM, Burt DW, Barton GJ, Storey KG.

Development. 2014 Aug;141(16):3266-76. doi: 10.1242/dev.112623. Epub 2014 Jul 25.

42.

All chromosomes great and small: 10 years on.

Griffin D, Burt DW.

Chromosome Res. 2014 Apr;22(1):1-6. doi: 10.1007/s10577-014-9413-0. No abstract available.

PMID:
24700106
43.

Identification of differentially evolved genes: an alternative approach to detection of accelerated molecular evolution from genome-wide comparative data.

Kim KW, Burt DW, Kim H, Cho S.

Evol Bioinform Online. 2013 Jul 28;9:285-99. doi: 10.4137/EBO.S12166. Print 2013.

44.

The duck genome and transcriptome provide insight into an avian influenza virus reservoir species.

Huang Y, Li Y, Burt DW, Chen H, Zhang Y, Qian W, Kim H, Gan S, Zhao Y, Li J, Yi K, Feng H, Zhu P, Li B, Liu Q, Fairley S, Magor KE, Du Z, Hu X, Goodman L, Tafer H, Vignal A, Lee T, Kim KW, Sheng Z, An Y, Searle S, Herrero J, Groenen MAM, Crooijmans RPMA, Faraut T, Cai Q, Webster RG, Aldridge JR, Warren WC, Bartschat S, Kehr S, Marz M, Stadler PF, Smith J, Kraus RHS, Zhao Y, Ren L, Fei J, Morisson M, Kaiser P, Griffin DK, Rao M, Pitel F, Wang J, Li N.

Nat Genet. 2013 Jul;45(7):776-783. doi: 10.1038/ng.2657. Epub 2013 Jun 9.

45.

Npas4 is activated by melatonin, and drives the clock gene Cry1 in the ovine pars tuberalis.

West A, Dupré SM, Yu L, Paton IR, Miedzinska K, McNeilly AS, Davis JR, Burt DW, Loudon AS.

Mol Endocrinol. 2013 Jun;27(6):979-89. doi: 10.1210/me.2012-1366. Epub 2013 Apr 18.

46.
47.

Microarray resources for genetic and genomic studies in chicken: a review.

Gheyas AA, Burt DW.

Genesis. 2013 May;51(5):337-56. doi: 10.1002/dvg.22387. Epub 2013 Mar 26. Review.

48.

Decreased expression of the satiety signal receptor CCKAR is responsible for increased growth and body weight during the domestication of chickens.

Dunn IC, Meddle SL, Wilson PW, Wardle CA, Law AS, Bishop VR, Hindar C, Robertson GW, Burt DW, Ellison SJ, Morrice DM, Hocking PM.

Am J Physiol Endocrinol Metab. 2013 May 1;304(9):E909-21. doi: 10.1152/ajpendo.00580.2012. Epub 2013 Feb 26.

49.

Bone mineral density QTL at sexual maturity and end of lay.

Podisi BK, Knott SA, Dunn IC, Burt DW, Hocking PM.

Br Poult Sci. 2012;53(6):763-9. doi: 10.1080/00071668.2012.747674.

50.

Development of a high density 600K SNP genotyping array for chicken.

Kranis A, Gheyas AA, Boschiero C, Turner F, Yu L, Smith S, Talbot R, Pirani A, Brew F, Kaiser P, Hocking PM, Fife M, Salmon N, Fulton J, Strom TM, Haberer G, Weigend S, Preisinger R, Gholami M, Qanbari S, Simianer H, Watson KA, Woolliams JA, Burt DW.

BMC Genomics. 2013 Jan 28;14:59. doi: 10.1186/1471-2164-14-59.

Supplemental Content

Loading ...
Support Center