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Innovative and rapid antimicrobial susceptibility testing systems.

van Belkum A, Burnham CD, Rossen JWA, Mallard F, Rochas O, Dunne WM Jr.

Nat Rev Microbiol. 2020 Feb 13. doi: 10.1038/s41579-020-0327-x. [Epub ahead of print] Review.


Genomic Characterization of Antibiotic Resistant Escherichia coli Isolated From Domestic Chickens in Pakistan.

Rafique M, Potter RF, Ferreiro A, Wallace MA, Rahim A, Ali Malik A, Siddique N, Abbas MA, D'Souza AW, Burnham CD, Ali N, Dantas G.

Front Microbiol. 2020 Jan 17;10:3052. doi: 10.3389/fmicb.2019.03052. eCollection 2019.


Assessment of antibiotic-resistant organism transmission among rooms of hospitalized patients, healthcare personnel, and the hospital environment utilizing surrogate markers and selective bacterial cultures.

Kwon JH, Reske K, O'Neil CA, Cass C, Seiler S, Wallace MA, Hink T, Liang SY, Fraser VJ, Burnham CD, Dubberke ER; CDC Prevention Epicenters Program.

Infect Control Hosp Epidemiol. 2020 Jan 23:1-8. doi: 10.1017/ice.2019.376. [Epub ahead of print]


Clinical impact of molecular identification of rare yeasts and nonsporulating molds recovered in culture from clinical specimens.

Jean S, Lainhart W, Anderson NW, Yarbrough ML, Burnham CD.

Diagn Microbiol Infect Dis. 2020 Mar;96(3):114945. doi: 10.1016/j.diagmicrobio.2019.114945. Epub 2019 Nov 19.


Longitudinal, strain-specific Staphylococcus aureus introduction and transmission events in households of children with community-associated meticillin-resistant S aureus skin and soft tissue infection: a prospective cohort study.

Mork RL, Hogan PG, Muenks CE, Boyle MG, Thompson RM, Sullivan ML, Morelli JJ, Seigel J, Orscheln RC, Bubeck Wardenburg J, Gehlert SJ, Burnham CD, Rzhetsky A, Fritz SA.

Lancet Infect Dis. 2020 Feb;20(2):188-198. doi: 10.1016/S1473-3099(19)30570-5. Epub 2019 Nov 26.


Breakpoint beware: reliance on historical breakpoints for Enterobacteriaceae leads to discrepancies in interpretation of susceptibility testing for carbapenems and cephalosporins and gaps in detection of carbapenem-resistant organisms.

Yarbrough ML, Wallace MA, Potter RF, D'Souza AW, Dantas G, Burnham CD.

Eur J Clin Microbiol Infect Dis. 2020 Jan;39(1):187-195. doi: 10.1007/s10096-019-03711-y. Epub 2019 Nov 2.


Clinical Impact of Revised Cefepime Breakpoint in Patients With Enterobacteriaceae Bacteremia.

Foong KS, Carlson AL, Munigala S, Burnham CD, Warren DK.

Open Forum Infect Dis. 2019 Jul 28;6(8):ofz341. doi: 10.1093/ofid/ofz341. eCollection 2019 Aug.


Comparison of Urine Antigen Assays for the Diagnosis of Histoplasma capsulatum Infection.

Persaud SP, Lawton T, Burnham CD, Anderson NW.

J Appl Lab Med. 2019 Nov;4(3):370-382. doi: 10.1373/jalm.2018.028910. Epub 2019 Jun 26.


Impact of an electronic hard-stop clinical decision support tool to limit repeat Clostridioides difficile toxin enzyme immunoassay testing on test utilization.

Kwon JH, Reske KA, Hink T, Jackups R, Burnham CD, Dubberke ER.

Infect Control Hosp Epidemiol. 2019 Dec;40(12):1423-1426. doi: 10.1017/ice.2019.275. Epub 2019 Oct 24.


Best Practices for Detection of Bloodstream Infection.

Burnham CD, Yarbrough ML.

J Appl Lab Med. 2019 Jan;3(4):740-742. doi: 10.1373/jalm.2018.026260. No abstract available.


Clinical Effect of Expedited Pathogen Identification and Susceptibility Testing for Gram-Negative Bacteremia and Candidemia by Use of the Accelerate PhenoTM System.

Burnham JP, Wallace MA, Fuller BM, Shupe A, Burnham CD, Kollef MH.

J Appl Lab Med. 2019 Jan;3(4):569-579. doi: 10.1373/jalm.2018.027201. Epub 2018 Nov 30.


Pediatric Anaerobic Blood Culture Practices in Industrialized Countries.

Thé T, Curfman A, Burnham CD, Hayes E, Schnadower D; with the Pediatric Emergency Medicine Collaborative Research Committee (PEM-CRC).

J Appl Lab Med. 2019 Jan;3(4):553-558. doi: 10.1373/jalm.2018.027128. Epub 2018 Dec 7.


Lack of Additional Diagnostic Yield of 16s rRNA Gene PCR for Prosthetic Joint Infections.

Lane MA, Ganeshraj N, Gu A, Warren DK, Burnham CD.

J Appl Lab Med. 2019 Sep;4(2):224-228. doi: 10.1373/jalm.2018.027003. Epub 2019 Feb 26.


Multicenter Study Demonstrates Standardization Requirements for Mold Identification by MALDI-TOF MS.

Lau AF, Walchak RC, Miller HB, Slechta ES, Kamboj K, Riebe K, Robertson AE, Gilbreath JJ, Mitchell KF, Wallace MA, Bryson AL, Balada-Llasat JM, Bulman A, Buchan BW, Burnham CD, Butler-Wu S, Desai U, Doern CD, Hanson KE, Henderson CM, Kostrzewa M, Ledeboer NA, Maier T, Pancholi P, Schuetz AN, Shi G, Wengenack NL, Zhang SX, Zelazny AM, Frank KM.

Front Microbiol. 2019 Sep 20;10:2098. doi: 10.3389/fmicb.2019.02098. eCollection 2019.


Spatiotemporal dynamics of multidrug resistant bacteria on intensive care unit surfaces.

D'Souza AW, Potter RF, Wallace M, Shupe A, Patel S, Sun X, Gul D, Kwon JH, Andleeb S, Burnham CD, Dantas G.

Nat Commun. 2019 Oct 8;10(1):4569. doi: 10.1038/s41467-019-12563-1.


Phenotypic and genotypic characterization of linezolid-resistant Enterococcus faecium from the USA and Pakistan.

Wardenburg KE, Potter RF, D'Souza AW, Hussain T, Wallace MA, Andleeb S, Burnham CD, Dantas G.

J Antimicrob Chemother. 2019 Dec 1;74(12):3445-3452. doi: 10.1093/jac/dkz367.


In Silico Analysis of Gardnerella Genomospecies Detected in the Setting of Bacterial Vaginosis.

Potter RF, Burnham CD, Dantas G.

Clin Chem. 2019 Nov;65(11):1375-1387. doi: 10.1373/clinchem.2019.305474. Epub 2019 Aug 28.


Evaluation of telavancin susceptibility in isolates of Staphylococcus aureus with reduced susceptibility to vancomycin.

McMullen AR, Lainhart W, Wallace MA, Shupe A, Burnham CD.

Eur J Clin Microbiol Infect Dis. 2019 Dec;38(12):2323-2330. doi: 10.1007/s10096-019-03683-z. Epub 2019 Aug 24.


Metabolomic networks connect host-microbiome processes to human Clostridioides difficile infections.

Robinson JI, Weir WH, Crowley JR, Hink T, Reske KA, Kwon JH, Burnham CD, Dubberke ER, Mucha PJ, Henderson JP.

J Clin Invest. 2019 Aug 12;130:3792-3806. doi: 10.1172/JCI126905. eCollection 2019 Aug 12.


Human ehrlichiosis at a tertiary-care academic medical center: Clinical associations and outcomes of transplant patients and patients with hemophagocytic lymphohistiocytosis.

Otrock ZK, Eby CS, Burnham CD.

Blood Cells Mol Dis. 2019 Jul;77:17-22. doi: 10.1016/j.bcmd.2019.03.002. Epub 2019 Mar 19.


Effect of changing urine testing orderables and clinician order sets on inpatient urine culture testing: Analysis from a large academic medical center.

Munigala S, Rojek R, Wood H, Yarbrough ML, Jackups RR, Burnham CD, Warren DK.

Infect Control Hosp Epidemiol. 2019 Mar;40(3):281-286. doi: 10.1017/ice.2018.356. Epub 2019 Feb 21.


Challenges in assessing the efficacy of systemic corticosteroids for severe wheezing episodes in preschool children.

Guilbert TW, Bacharier LB, Mauger DT, Phipatanakul W, Szefler SJ, Boehmer S, Beigelman A, Fitzpatrick AM, Jackson DJ, Baxi SN, Benson M, Burnham CD, Cabana MD, Castro M, Chmiel JF, Covar R, Daines M, Gaffin JM, Gentile DA, Holguin F, Israel E, Kelly HW, Lazarus SC, Lemanske RF Jr, Ly N, Meade K, Morgan W, Moy J, Olin JT, Peters SP, Pongracic JA, Raissy HH, Ross K, Sheehan WJ, Sorkness C, Teague WG, Thyne S, Martinez FD; National Heart, Lung, and Blood Institute's AsthmaNet.

J Allergy Clin Immunol. 2019 May;143(5):1934-1937.e4. doi: 10.1016/j.jaci.2018.10.071. Epub 2019 Jan 17. No abstract available.


Clinical Microbiology Is Growing Up: The Total Laboratory Automation Revolution.

Bailey AL, Ledeboer N, Burnham CD.

Clin Chem. 2019 May;65(5):634-643. doi: 10.1373/clinchem.2017.274522. Epub 2018 Dec 5. Review.


Interplay of personal, pet, and environmental colonization in households affected by community-associated methicillin-resistant Staphylococcus aureus.

Hogan PG, Mork RL, Boyle MG, Muenks CE, Morelli JJ, Thompson RM, Sullivan ML, Gehlert SJ, Merlo JR, McKenzie MG, Wardenburg JB, Rzhetsky A, Burnham CD, Fritz SA.

J Infect. 2019 Mar;78(3):200-207. doi: 10.1016/j.jinf.2018.11.006. Epub 2018 Nov 29.


Diagnostic Interpretation Guidance for Pediatric Enteric Pathogens: A Modified Delphi Consensus Process.

Stang AS, Trudeau M, Vanderkooi OG, Lee BE, Chui L, Pang XL, Allen V, Burnham CD, Goldfarb DM, MacDonald J, Parsons B, Petrich A, Pollari F, Tarr PI, Tipples G, Zhuo R, Freedman SB.

Can J Infect Dis Med Microbiol. 2018 Sep 27;2018:2589826. doi: 10.1155/2018/2589826. eCollection 2018.


Carriage of the Toxic Shock Syndrome Toxin Gene by Contemporary Community-Associated Staphylococcus aureus Isolates.

Parrish KL, Wylie KM, Reich PJ, Hogan PG, Wylie TN, Kennedy CR, Lainhart W, Hunstad DA, Burnham CD, Fritz SA.

J Pediatric Infect Dis Soc. 2019 Nov 6;8(5):470-473. doi: 10.1093/jpids/piy098.


Impact of total laboratory automation on workflow and specimen processing time for culture of urine specimens.

Yarbrough ML, Lainhart W, McMullen AR, Anderson NW, Burnham CD.

Eur J Clin Microbiol Infect Dis. 2018 Dec;37(12):2405-2411. doi: 10.1007/s10096-018-3391-7. Epub 2018 Sep 29.


Clostridium difficile colonization among patients with clinically significant diarrhea and no identifiable cause of diarrhea.

Dubberke ER, Reske KA, Hink T, Kwon JH, Cass C, Bongu J, Burnham CD, Henderson JP.

Infect Control Hosp Epidemiol. 2018 Nov;39(11):1330-1333. doi: 10.1017/ice.2018.225. Epub 2018 Sep 18.


Influence of Molecular Testing on Influenza Diagnosis.

Yarbrough ML, Burnham CD, Anderson NW, Banerjee R, Ginocchio CC, Hanson KE, Uyeki TM.

Clin Chem. 2018 Nov;64(11):1560-1566. doi: 10.1373/clinchem.2018.289363. Epub 2018 Sep 12. No abstract available.


Comparing the Yield of Staphylococcus aureus Recovery with Static versus Agitated Broth Incubation.

Muenks CE, Hogan PG, Burnham CD, Fritz SA.

J Pathog. 2018 Jul 26;2018:1462671. doi: 10.1155/2018/1462671. eCollection 2018.


Comprehensive modeling reveals proximity, seasonality, and hygiene practices as key determinants of MRSA colonization in exposed households.

Mork RL, Hogan PG, Muenks CE, Boyle MG, Thompson RM, Morelli JJ, Sullivan ML, Gehlert SJ, Ross DG, Yn A, Bubeck Wardenburg J, Rzhetsky A, Burnham CD, Fritz SA.

Pediatr Res. 2018 Nov;84(5):668-676. doi: 10.1038/s41390-018-0113-x. Epub 2018 Jul 19.


Superficieibacter electus gen. nov., sp. nov., an Extended-Spectrum β-Lactamase Possessing Member of the Enterobacteriaceae Family, Isolated From Intensive Care Unit Surfaces.

Potter RF, D'Souza AW, Wallace MA, Shupe A, Patel S, Gul D, Kwon JH, Beatty W, Andleeb S, Burnham CD, Dantas G.

Front Microbiol. 2018 Jul 20;9:1629. doi: 10.3389/fmicb.2018.01629. eCollection 2018.


Restoration of T Cell function in multi-drug resistant bacterial sepsis after interleukin-7, anti-PD-L1, and OX-40 administration.

Thampy LK, Remy KE, Walton AH, Hong Z, Liu K, Liu R, Yi V, Burnham CD, Hotchkiss RS.

PLoS One. 2018 Jun 26;13(6):e0199497. doi: 10.1371/journal.pone.0199497. eCollection 2018.


Clinical epidemiology of carbapenem-resistant gram-negative sepsis among hospitalized patients: Shifting burden of disease?

Britt NS, Ritchie DJ, Kollef MH, Burnham CD, Durkin MJ, Hampton NB, Micek ST.

Am J Infect Control. 2018 Oct;46(10):1092-1096. doi: 10.1016/j.ajic.2018.03.013. Epub 2018 Apr 26.


Two cases of fungal keratitis caused by Metarhizium anisopliae.

Goodman AL, Lockhart SR, Lysen CB, Westblade LF, Burnham CD, Burd EM.

Med Mycol Case Rep. 2018 Mar 6;21:8-11. doi: 10.1016/j.mmcr.2018.03.003. eCollection 2018 Sep.


Carriage of Cronobacter sakazakii in the Very Preterm Infant Gut.

Chandrasekaran S, Burnham CD, Warner BB, Tarr PI, Wylie TN.

Clin Infect Dis. 2018 Jul 2;67(2):269-274. doi: 10.1093/cid/ciy062.


Diagnostic accuracy of fungal identification in histopathology and cytopathology specimens.

Kung VL, Chernock RD, Burnham CD.

Eur J Clin Microbiol Infect Dis. 2018 Jan;37(1):157-165. doi: 10.1007/s10096-017-3116-3. Epub 2017 Oct 13.


Diagnosing antimicrobial resistance.

Burnham CD, Leeds J, Nordmann P, O'Grady J, Patel J.

Nat Rev Microbiol. 2017 Oct 12;15(11):697-703. doi: 10.1038/nrmicro.2017.103. Review.


Characterization of Aerosols Generated During Patient Care Activities.

O'Neil CA, Li J, Leavey A, Wang Y, Hink M, Wallace M, Biswas P, Burnham CD, Babcock HM; Centers for Disease Control and Prevention Epicenters Program.

Clin Infect Dis. 2017 Oct 15;65(8):1335-1341. doi: 10.1093/cid/cix535.


Challenges and Opportunities in Implementing Total Laboratory Automation.

Genzen JR, Burnham CD, Felder RA, Hawker CD, Lippi G, Peck Palmer OM.

Clin Chem. 2018 Feb;64(2):259-264. doi: 10.1373/clinchem.2017.274068. Epub 2017 Oct 2. No abstract available.


An Evaluation of the Prevalence of Vancomycin-Resistant Enterococci (VRE) and Methicillin-Resistant Staphylococcus aureus (MRSA) in Hospital Food.

Kwon JH, Reske KA, Hink T, Seiler SM, Wallace MA, Bommarito KM, Burnham CD, Dubberke ER.

Infect Control Hosp Epidemiol. 2017 Nov;38(11):1373-1375. doi: 10.1017/ice.2017.207. Epub 2017 Sep 27. No abstract available.


Utility of strain typing of Propionibacterium acnes in central nervous system and prosthetic joint infections to differentiate contamination from infection: a retrospective cohort.

Burnham JP, Shupe A, Burnham CD, Warren DK.

Eur J Clin Microbiol Infect Dis. 2017 Dec;36(12):2483-2489. doi: 10.1007/s10096-017-3090-9. Epub 2017 Aug 25.


Identification of Nocardia, Streptomyces, and Tsukamurella using MALDI-TOF MS with the Bruker Biotyper.

Yarbrough ML, Lainhart W, Burnham CD.

Diagn Microbiol Infect Dis. 2017 Oct;89(2):92-97. doi: 10.1016/j.diagmicrobio.2017.06.019. Epub 2017 Jul 1.


Colonization with 19F and other pneumococcal conjugate vaccine serotypes in children in St. Louis, Missouri, USA.

McFarland M, Szasz TP, Zhou JY, Motley K, Sivapalan JS, Isaacson-Schmid M, Todd EM, Hogan PG, Fritz SA, Burnham CD, Hoffmann S, Morley SC.

Vaccine. 2017 Aug 3;35(34):4389-4395. doi: 10.1016/j.vaccine.2017.06.047. Epub 2017 Jul 4.


The Role of Procalcitonin in Diagnosis of Sepsis and Antibiotic Stewardship: Opportunities and Challenges.

Fung AWS, Beriault D, Diamandis EP, Burnham CD, Dorman T, Downing M, Hayden J, Langford BJ.

Clin Chem. 2017 Sep;63(9):1436-1441. doi: 10.1373/clinchem.2017.272294. Epub 2017 Jun 20. No abstract available.


Assessment of Healthcare Worker Protocol Deviations and Self-Contamination During Personal Protective Equipment Donning and Doffing.

Kwon JH, Burnham CD, Reske KA, Liang SY, Hink T, Wallace MA, Shupe A, Seiler S, Cass C, Fraser VJ, Dubberke ER.

Infect Control Hosp Epidemiol. 2017 Sep;38(9):1077-1083. doi: 10.1017/ice.2017.121. Epub 2017 Jun 13.


Ventilator-Associated Pneumonia: The Role of Emerging Diagnostic Technologies.

Kollef MH, Burnham CD.

Semin Respir Crit Care Med. 2017 Jun;38(3):253-263. doi: 10.1055/s-0037-1599224. Epub 2017 Jun 4. Review.


The Molecular and Clinical Epidemiology of Extended-Spectrum Cephalosporin- and Carbapenem-Resistant Enterobacteriaceae at 4 US Pediatric Hospitals.

Zerr DM, Weissman SJ, Zhou C, Kronman MP, Adler AL, Berry JE, Rayar J, Myers J, Haaland WL, Burnham CD, Elward A, Newland J, Selvarangan R, Sullivan KV, Zaoutis T, Qin X.

J Pediatric Infect Dis Soc. 2017 Nov 24;6(4):366-375. doi: 10.1093/jpids/piw076.

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