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Species Designations Belie Phenotypic and Genotypic Heterogeneity in Oral Streptococci.

Velsko IM, Chakraborty B, Nascimento MM, Burne RA, Richards VP.

mSystems. 2018 Dec 18;3(6). pii: e00158-18. doi: 10.1128/mSystems.00158-18. eCollection 2018 Nov-Dec.


Intracellular Signaling by the comRS System in Streptococcus mutans Genetic Competence.

Underhill SAM, Shields RC, Kaspar JR, Haider M, Burne RA, Hagen SJ.

mSphere. 2018 Oct 31;3(5). pii: e00444-18. doi: 10.1128/mSphere.00444-18.


Essential Roles of the sppRA Fructose-Phosphate Phosphohydrolase Operon in Carbohydrate Metabolism and Virulence Expression by Streptococcus mutans.

Zeng L, Burne RA.

J Bacteriol. 2018 Dec 20;201(2). pii: e00586-18. doi: 10.1128/JB.00586-18. Print 2019 Jan 15.


Threshold regulation and stochasticity from the MecA/ClpCP proteolytic system in Streptococcus mutans competence.

Son M, Kaspar J, Ahn SJ, Burne RA, Hagen SJ.

Mol Microbiol. 2018 Dec;110(6):914-930. doi: 10.1111/mmi.13992. Epub 2018 Nov 11.


Competence inhibition by the XrpA peptide encoded within the comX gene of Streptococcus mutans.

Kaspar J, Shields RC, Burne RA.

Mol Microbiol. 2018 Aug;109(3):345-364. doi: 10.1111/mmi.13989. Epub 2018 Jul 31.


Preferred Hexoses Influence Long-Term Memory in and Induction of Lactose Catabolism by Streptococcus mutans.

Zeng L, Chen L, Burne RA.

Appl Environ Microbiol. 2018 Jul 2;84(14). pii: e00864-18. doi: 10.1128/AEM.00864-18. Print 2018 Jul 15.


Genomewide Identification of Essential Genes and Fitness Determinants of Streptococcus mutans UA159.

Shields RC, Zeng L, Culp DJ, Burne RA.

mSphere. 2018 Feb 7;3(1). pii: e00031-18. doi: 10.1128/mSphere.00031-18. eCollection 2018 Jan-Feb.


Getting to Know "The Known Unknowns": Heterogeneity in the Oral Microbiome.

Burne RA.

Adv Dent Res. 2018 Feb;29(1):66-70. doi: 10.1177/0022034517735293. Review.


Diversity in Antagonistic Interactions between Commensal Oral Streptococci and Streptococcus mutans.

Huang X, Browngardt CM, Jiang M, Ahn SJ, Burne RA, Nascimento MM.

Caries Res. 2018;52(1-2):88-101. doi: 10.1159/000479091. Epub 2017 Dec 20.


Differential oxidative stress tolerance of Streptococcus mutans isolates affects competition in an ecological mixed-species biofilm model.

Liu Y, Palmer SR, Chang H, Combs AN, Burne RA, Koo H.

Environ Microbiol Rep. 2018 Feb;10(1):12-22. doi: 10.1111/1758-2229.12600. Epub 2017 Dec 4.


Genome-wide screens reveal new gene products that influence genetic competence in Streptococcus mutans.

Shields RC, O'Brien G, Maricic N, Kesterson A, Grace M, Hagen SJ, Burne RA.

J Bacteriol. 2017 Nov 6. pii: JB.00508-17. doi: 10.1128/JB.00508-17. [Epub ahead of print]


Oral Biofilms: Pathogens, Matrix, and Polymicrobial Interactions in Microenvironments.

Bowen WH, Burne RA, Wu H, Koo H.

Trends Microbiol. 2018 Mar;26(3):229-242. doi: 10.1016/j.tim.2017.09.008. Epub 2017 Oct 30. Review.


Oxidative Stressors Modify the Response of Streptococcus mutans to Its Competence Signal Peptides.

De Furio M, Ahn SJ, Burne RA, Hagen SJ.

Appl Environ Microbiol. 2017 Oct 31;83(22). pii: e01345-17. doi: 10.1128/AEM.01345-17. Print 2017 Nov 15.


Coordinated Regulation of the EIIMan and fruRKI Operons of Streptococcus mutans by Global and Fructose-Specific Pathways.

Zeng L, Chakraborty B, Farivar T, Burne RA.

Appl Environ Microbiol. 2017 Oct 17;83(21). pii: e01403-17. doi: 10.1128/AEM.01403-17. Print 2017 Nov 1.


Intercellular communication via the comX-Inducing Peptide (XIP) of Streptococcus mutans.

Kaspar J, Underhill SAM, Shields RC, Reyes A, Rosenzweig S, Hagen SJ, Burne RA.

J Bacteriol. 2017 Aug 14. pii: JB.00404-17. doi: 10.1128/JB.00404-17. [Epub ahead of print]


RNA-Seq Reveals Enhanced Sugar Metabolism in Streptococcus mutans Co-cultured with Candida albicans within Mixed-Species Biofilms.

He J, Kim D, Zhou X, Ahn SJ, Burne RA, Richards VP, Koo H.

Front Microbiol. 2017 Jun 8;8:1036. doi: 10.3389/fmicb.2017.01036. eCollection 2017.


Effects of Arginine on Growth, Virulence Gene Expression, and Stress Tolerance by Streptococcus mutans.

Chakraborty B, Burne RA.

Appl Environ Microbiol. 2017 May 19. pii: AEM.00496-17. doi: 10.1128/AEM.00496-17. [Epub ahead of print]


Microbiomes of Site-Specific Dental Plaques from Children with Different Caries Status.

Richards VP, Alvarez AJ, Luce AR, Bedenbaugh M, Mitchell ML, Burne RA, Nascimento MM.

Infect Immun. 2017 Jul 19;85(8). pii: e00106-17. doi: 10.1128/IAI.00106-17. Print 2017 Aug.


CcpA and CodY Coordinate Acetate Metabolism in Streptococcus mutans.

Kim JN, Burne RA.

Appl Environ Microbiol. 2017 Mar 17;83(7). pii: e03274-16. doi: 10.1128/AEM.03274-16. Print 2017 Apr 1.


An Essential Role for (p)ppGpp in the Integration of Stress Tolerance, Peptide Signaling, and Competence Development in Streptococcus mutans.

Kaspar J, Kim JN, Ahn SJ, Burne RA.

Front Microbiol. 2016 Jul 28;7:1162. doi: 10.3389/fmicb.2016.01162. eCollection 2016.


Growth of Streptococcus mutans in Biofilms Alters Peptide Signaling at the Sub-population Level.

Shields RC, Burne RA.

Front Microbiol. 2016 Jul 15;7:1075. doi: 10.3389/fmicb.2016.01075. eCollection 2016.


Effects of Carbohydrate Source on Genetic Competence in Streptococcus mutans.

Moye ZD, Son M, Rosa-Alberty AE, Zeng L, Ahn SJ, Hagen SJ, Burne RA.

Appl Environ Microbiol. 2016 Jul 15;82(15):4821-4834. doi: 10.1128/AEM.01205-16. Print 2016 Aug 1.


Amino Sugars Enhance the Competitiveness of Beneficial Commensals with Streptococcus mutans through Multiple Mechanisms.

Zeng L, Farivar T, Burne RA.

Appl Environ Microbiol. 2016 May 31;82(12):3671-82. doi: 10.1128/AEM.00637-16. Print 2016 Jun 15.


A Highly Arginolytic Streptococcus Species That Potently Antagonizes Streptococcus mutans.

Huang X, Palmer SR, Ahn SJ, Richards VP, Williams ML, Nascimento MM, Burne RA.

Appl Environ Microbiol. 2016 Jan 29;82(7):2187-201. doi: 10.1128/AEM.03887-15.


Sucrose- and Fructose-Specific Effects on the Transcriptome of Streptococcus mutans, as Determined by RNA Sequencing.

Zeng L, Burne RA.

Appl Environ Microbiol. 2015 Oct 16;82(1):146-56. doi: 10.1128/AEM.02681-15. Print 2016 Jan 1.


Bidirectional signaling in the competence regulatory pathway of Streptococcus mutans.

Son M, Shields RC, Ahn SJ, Burne RA, Hagen SJ.

FEMS Microbiol Lett. 2015 Oct;362(19). pii: fnv159. doi: 10.1093/femsle/fnv159. Epub 2015 Sep 10.


NagR Differentially Regulates the Expression of the glmS and nagAB Genes Required for Amino Sugar Metabolism by Streptococcus mutans.

Zeng L, Burne RA.

J Bacteriol. 2015 Nov;197(22):3533-44. doi: 10.1128/JB.00606-15. Epub 2015 Aug 31.


Conserved and divergent functions of RcrRPQ in Streptococcus gordonii and S. mutans.

Shields RC, Burne RA.

FEMS Microbiol Lett. 2015 Aug;362(16). pii: fnv119. doi: 10.1093/femsle/fnv119. Epub 2015 Jul 30.


Pluronics-Formulated Farnesol Promotes Efficient Killing and Demonstrates Novel Interactions with Streptococcus mutans Biofilms.

Mogen AB, Chen F, Ahn SJ, Burne RA, Wang D, Rice KC.

PLoS One. 2015 Jul 29;10(7):e0133886. doi: 10.1371/journal.pone.0133886. eCollection 2015.


Post-transcriptional regulation by distal Shine-Dalgarno sequences in the grpE-dnaK intergenic region of Streptococcus mutans.

Palmer SR, Burne RA.

Mol Microbiol. 2015 Oct;98(2):302-17. doi: 10.1111/mmi.13122. Epub 2015 Sep 4.


Sharply Tuned pH Response of Genetic Competence Regulation in Streptococcus mutans: a Microfluidic Study of the Environmental Sensitivity of comX.

Son M, Ghoreishi D, Ahn SJ, Burne RA, Hagen SJ.

Appl Environ Microbiol. 2015 Aug 15;81(16):5622-31. doi: 10.1128/AEM.01421-15. Epub 2015 Jun 12.


Genetics and Physiology of Acetate Metabolism by the Pta-Ack Pathway of Streptococcus mutans.

Kim JN, Ahn SJ, Burne RA.

Appl Environ Microbiol. 2015 Aug;81(15):5015-25. doi: 10.1128/AEM.01160-15. Epub 2015 May 15.


Characterization of the arginolytic microflora provides insights into pH homeostasis in human oral biofilms.

Huang X, Schulte RM, Burne RA, Nascimento MM.

Caries Res. 2015;49(2):165-76. doi: 10.1159/000365296. Epub 2015 Jan 28.


A unique open reading frame within the comX gene of Streptococcus mutans regulates genetic competence and oxidative stress tolerance.

Kaspar J, Ahn SJ, Palmer SR, Choi SC, Stanhope MJ, Burne RA.

Mol Microbiol. 2015 May;96(3):463-82. doi: 10.1111/mmi.12948. Epub 2015 Mar 4.


Fueling the caries process: carbohydrate metabolism and gene regulation by Streptococcus mutans.

Moye ZD, Zeng L, Burne RA.

J Oral Microbiol. 2014 Sep 5;6. doi: 10.3402/jom.v6.24878. eCollection 2014. Review.


Regulation of competence and gene expression in Streptococcus mutans by the RcrR transcriptional regulator.

Seaton K, Ahn SJ, Burne RA.

Mol Oral Microbiol. 2015 Apr;30(2):147-159. doi: 10.1111/omi.12079. Epub 2014 Oct 3.


Discovery of novel peptides regulating competence development in Streptococcus mutans.

Ahn SJ, Kaspar J, Kim JN, Seaton K, Burne RA.

J Bacteriol. 2014 Nov;196(21):3735-45. doi: 10.1128/JB.01942-14. Epub 2014 Aug 18.


The pH-dependent expression of the urease operon in Streptococcus salivarius is mediated by CodY.

Huang SC, Burne RA, Chen YY.

Appl Environ Microbiol. 2014 Sep;80(17):5386-93. doi: 10.1128/AEM.00755-14. Epub 2014 Jun 20.


Uptake and metabolism of N-acetylglucosamine and glucosamine by Streptococcus mutans.

Moye ZD, Burne RA, Zeng L.

Appl Environ Microbiol. 2014 Aug;80(16):5053-67. doi: 10.1128/AEM.00820-14. Epub 2014 Jun 13.


Streptococcus mutans extracellular DNA is upregulated during growth in biofilms, actively released via membrane vesicles, and influenced by components of the protein secretion machinery.

Liao S, Klein MI, Heim KP, Fan Y, Bitoun JP, Ahn SJ, Burne RA, Koo H, Brady LJ, Wen ZT.

J Bacteriol. 2014 Jul;196(13):2355-66. doi: 10.1128/JB.01493-14. Epub 2014 Apr 18.


Phylogenomics and the dynamic genome evolution of the genus Streptococcus.

Richards VP, Palmer SR, Pavinski Bitar PD, Qin X, Weinstock GM, Highlander SK, Town CD, Burne RA, Stanhope MJ.

Genome Biol Evol. 2014 Apr;6(4):741-53. doi: 10.1093/gbe/evu048.


The effect of arginine on oral biofilm communities.

Nascimento MM, Browngardt C, Xiaohui X, Klepac-Ceraj V, Paster BJ, Burne RA.

Mol Oral Microbiol. 2014 Feb;29(1):45-54. doi: 10.1111/omi.12044. Epub 2013 Dec 2.


Modification of gene expression and virulence traits in Streptococcus mutans in response to carbohydrate availability.

Moye ZD, Zeng L, Burne RA.

Appl Environ Microbiol. 2014 Feb;80(3):972-85. doi: 10.1128/AEM.03579-13. Epub 2013 Nov 22.


Growth phase and pH influence peptide signaling for competence development in Streptococcus mutans.

Guo Q, Ahn SJ, Kaspar J, Zhou X, Burne RA.

J Bacteriol. 2014 Jan;196(2):227-36. doi: 10.1128/JB.00995-13. Epub 2013 Oct 25.


Oral arginine metabolism may decrease the risk for dental caries in children.

Nascimento MM, Liu Y, Kalra R, Perry S, Adewumi A, Xu X, Primosch RE, Burne RA.

J Dent Res. 2013 Jul;92(7):604-8. doi: 10.1177/0022034513487907. Epub 2013 May 2.


Phenotypic heterogeneity of genomically-diverse isolates of Streptococcus mutans.

Palmer SR, Miller JH, Abranches J, Zeng L, Lefebure T, Richards VP, Lemos JA, Stanhope MJ, Burne RA.

PLoS One. 2013 Apr 16;8(4):e61358. doi: 10.1371/journal.pone.0061358. Print 2013. Erratum in: PLoS One. 2013;8(11). doi:10.1371/annotation/ffff8cd5-b8fa-4d3c-a993-e5169198f1e6.


Core-gene-encoded peptide regulating virulence-associated traits in Streptococcus mutans.

Kim JN, Stanhope MJ, Burne RA.

J Bacteriol. 2013 Jun;195(12):2912-20. doi: 10.1128/JB.00189-13. Epub 2013 Apr 19.


Gene regulation by CcpA and catabolite repression explored by RNA-Seq in Streptococcus mutans.

Zeng L, Choi SC, Danko CG, Siepel A, Stanhope MJ, Burne RA.

PLoS One. 2013;8(3):e60465. doi: 10.1371/journal.pone.0060465. Epub 2013 Mar 28.


A galactose-specific sugar: phosphotransferase permease is prevalent in the non-core genome of Streptococcus mutans.

Zeng L, Xue P, Stanhope MJ, Burne RA.

Mol Oral Microbiol. 2013 Aug;28(4):292-301. doi: 10.1111/omi.12025. Epub 2013 Feb 20.


Evolutionary and population genomics of the cavity causing bacteria Streptococcus mutans.

Cornejo OE, Lefébure T, Bitar PD, Lang P, Richards VP, Eilertson K, Do T, Beighton D, Zeng L, Ahn SJ, Burne RA, Siepel A, Bustamante CD, Stanhope MJ.

Mol Biol Evol. 2013 Apr;30(4):881-93. doi: 10.1093/molbev/mss278. Epub 2012 Dec 10.

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