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Metabolic Profile of Supragingival Plaque Exposed to Arginine and Fluoride.

Nascimento MM, Alvarez AJ, Huang X, Browngardt C, Jenkins R, Sinhoreti MC, Ribeiro APD, Dilbone DA, Richards VP, Garrett TJ, Burne RA.

J Dent Res. 2019 Oct;98(11):1245-1252. doi: 10.1177/0022034519869906. Epub 2019 Aug 27.


Novel Probiotic Mechanisms of the Oral Bacterium Streptococcus sp. A12 as Explored with Functional Genomics.

Lee K, Walker AR, Chakraborty B, Kaspar JR, Nascimento MM, Burne RA.

Appl Environ Microbiol. 2019 Oct 16;85(21). pii: e01335-19. doi: 10.1128/AEM.01335-19. Print 2019 Nov 1.


Carbohydrate and PepO control bimodality in competence development by Streptococcus mutans.

Underhill SAM, Shields RC, Burne RA, Hagen SJ.

Mol Microbiol. 2019 Nov;112(5):1388-1402. doi: 10.1111/mmi.14367. Epub 2019 Aug 29.


Fluorescence Tools Adapted for Real-Time Monitoring of the Behaviors of Streptococcus Species.

Shields RC, Kaspar JR, Lee K, Underhill SAM, Burne RA.

Appl Environ Microbiol. 2019 Jul 18;85(15). pii: e00620-19. doi: 10.1128/AEM.00620-19. Print 2019 Aug 1.


Arginine Metabolism in Supragingival Oral Biofilms as a Potential Predictor of Caries Risk.

Nascimento MM, Alvarez AJ, Huang X, Hanway S, Perry S, Luce A, Richards VP, Burne RA.

JDR Clin Trans Res. 2019 Jul;4(3):262-270. doi: 10.1177/2380084419834234. Epub 2019 Apr 30.


Spontaneously Arising Streptococcus mutans Variants with Reduced Susceptibility to Chlorhexidine Display Genetic Defects and Diminished Fitness.

Kaspar JR, Godwin MJ, Velsko IM, Richards VP, Burne RA.

Antimicrob Agents Chemother. 2019 Jun 24;63(7). pii: e00161-19. doi: 10.1128/AAC.00161-19. Print 2019 Jul.


Amino Sugars Modify Antagonistic Interactions between Commensal Oral Streptococci and Streptococcus mutans.

Chen L, Chakraborty B, Zou J, Burne RA, Zeng L.

Appl Environ Microbiol. 2019 May 2;85(10). pii: e00370-19. doi: 10.1128/AEM.00370-19. Print 2019 May 15.


Erratum for Underhill et al., "Intracellular Signaling by the comRS System in Streptococcus mutans Genetic Competence".

Underhill SAM, Shields RC, Kaspar JR, Haider M, Burne RA, Hagen SJ.

mSphere. 2019 Feb 13;4(1). pii: e00042-19. doi: 10.1128/mSphere.00042-19. No abstract available.


Species Designations Belie Phenotypic and Genotypic Heterogeneity in Oral Streptococci.

Velsko IM, Chakraborty B, Nascimento MM, Burne RA, Richards VP.

mSystems. 2018 Dec 18;3(6). pii: e00158-18. doi: 10.1128/mSystems.00158-18. eCollection 2018 Nov-Dec.


Intracellular Signaling by the comRS System in Streptococcus mutans Genetic Competence.

Underhill SAM, Shields RC, Kaspar JR, Haider M, Burne RA, Hagen SJ.

mSphere. 2018 Oct 31;3(5). pii: e00444-18. doi: 10.1128/mSphere.00444-18. Erratum in: mSphere. 2019 Feb 13;4(1):.


Essential Roles of the sppRA Fructose-Phosphate Phosphohydrolase Operon in Carbohydrate Metabolism and Virulence Expression by Streptococcus mutans.

Zeng L, Burne RA.

J Bacteriol. 2018 Dec 20;201(2). pii: e00586-18. doi: 10.1128/JB.00586-18. Print 2019 Jan 15.


Stage III melanoma incidence and impact of transitioning to the 8th AJCC staging system: a US population-based study.

Tarhini A, Ghate S, Ionescu-Ittu R, Shi S, Nakasato A, Ndife B, Laliberté F, Burne R, Duh MS.

Future Oncol. 2019 Feb;15(4):359-370. doi: 10.2217/fon-2018-0671. Epub 2018 Oct 15.


Patterns of treatment and BRAF testing with immune checkpoint inhibitors and targeted therapy in patients with metastatic melanoma presumed to be BRAF positive.

Ghate S, Ionescu-Ittu R, Burne R, Ndife B, Laliberté F, Nakasato A, Duh MS.

Melanoma Res. 2019 Jun;29(3):301-310. doi: 10.1097/CMR.0000000000000504.


Postsurgical treatment landscape and economic burden of locoregional and distant recurrence in patients with operable nonmetastatic melanoma.

Tarhini A, Ghate SR, Ionescu-Ittu R, Manceur AM, Ndife B, Jacques P, Laliberté F, Nakasato A, Burne R, Duh MS.

Melanoma Res. 2018 Dec;28(6):618-628. doi: 10.1097/CMR.0000000000000507.


Treatment and Monitoring Patterns Among Premenopausal Women with HR+/HER2- Advanced Breast Cancer.

Dalal AA, Gauthier G, Gagnon-Sanschagrin P, Burne R, Guérin A, Niravath P, Small T.

Adv Ther. 2018 Sep;35(9):1356-1367. doi: 10.1007/s12325-018-0764-3. Epub 2018 Aug 13.


Asthma is not associated with the need for surgery in Crohn's disease when controlling for smoking status: a population-based cohort study.

Kuenzig ME, Sadatsafavi M, Aviña-Zubieta JA, Burne RM, Abrahamowicz M, Beauchamp ME, Kaplan GG, Benchimol EI.

Clin Epidemiol. 2018 Jul 12;10:831-840. doi: 10.2147/CLEP.S156772. eCollection 2018.


Healthcare resource utilization in patients with metastatic melanoma receiving first-line therapy with dabrafenib + trametinib versus nivolumab or pembrolizumab monotherapy.

Ghate SR, Ionescu-Ittu R, Burne R, Ndife B, Laliberté F, Nakasato A, Duh MS.

Curr Med Res Opin. 2018 Dec;34(12):2169-2176. doi: 10.1080/03007995.2018.1501351. Epub 2018 Aug 5.


Threshold regulation and stochasticity from the MecA/ClpCP proteolytic system in Streptococcus mutans competence.

Son M, Kaspar J, Ahn SJ, Burne RA, Hagen SJ.

Mol Microbiol. 2018 Dec;110(6):914-930. doi: 10.1111/mmi.13992. Epub 2018 Nov 11.


Dosing Patterns and Economic Burden of Palbociclib Drug Wastage in HR+/HER2- Metastatic Breast Cancer.

Dalal AA, Gagnon-Sanschagrin P, Burne R, Guérin A, Gauthier G, Small T, Niravath P.

Adv Ther. 2018 Jun;35(6):768-778. doi: 10.1007/s12325-018-0701-5. Epub 2018 Jun 4.


Competence inhibition by the XrpA peptide encoded within the comX gene of Streptococcus mutans.

Kaspar J, Shields RC, Burne RA.

Mol Microbiol. 2018 Aug;109(3):345-364. doi: 10.1111/mmi.13989. Epub 2018 Jul 31.


Preferred Hexoses Influence Long-Term Memory in and Induction of Lactose Catabolism by Streptococcus mutans.

Zeng L, Chen L, Burne RA.

Appl Environ Microbiol. 2018 Jul 2;84(14). pii: e00864-18. doi: 10.1128/AEM.00864-18. Print 2018 Jul 15.


Economic Burden of HR+/HER2- Metastatic Breast Cancer Among Adult Premenopausal Women.

Gauthier G, Gagnon-Sanschagrin P, Guérin A, Burne R, Small T, Niravath P, Dalal AA.

Adv Ther. 2018 Apr;35(4):503-514. doi: 10.1007/s12325-018-0689-x. Epub 2018 Mar 20.


Genomewide Identification of Essential Genes and Fitness Determinants of Streptococcus mutans UA159.

Shields RC, Zeng L, Culp DJ, Burne RA.

mSphere. 2018 Feb 7;3(1). pii: e00031-18. doi: 10.1128/mSphere.00031-18. eCollection 2018 Jan-Feb.


Getting to Know "The Known Unknowns": Heterogeneity in the Oral Microbiome.

Burne RA.

Adv Dent Res. 2018 Feb;29(1):66-70. doi: 10.1177/0022034517735293. Review.


A biofilm and organomineralisation model for the growth and limiting size of ooids.

Batchelor MT, Burne RV, Henry BI, Li F, Paul J.

Sci Rep. 2018 Jan 11;8(1):559. doi: 10.1038/s41598-017-18908-4.


Diversity in Antagonistic Interactions between Commensal Oral Streptococci and Streptococcus mutans.

Huang X, Browngardt CM, Jiang M, Ahn SJ, Burne RA, Nascimento MM.

Caries Res. 2018;52(1-2):88-101. doi: 10.1159/000479091. Epub 2017 Dec 20.


Differential oxidative stress tolerance of Streptococcus mutans isolates affects competition in an ecological mixed-species biofilm model.

Liu Y, Palmer SR, Chang H, Combs AN, Burne RA, Koo H.

Environ Microbiol Rep. 2018 Feb;10(1):12-22. doi: 10.1111/1758-2229.12600. Epub 2017 Dec 4.


Genome-Wide Screens Reveal New Gene Products That Influence Genetic Competence in Streptococcus mutans.

Shields RC, O'Brien G, Maricic N, Kesterson A, Grace M, Hagen SJ, Burne RA.

J Bacteriol. 2017 Dec 20;200(2). pii: e00508-17. doi: 10.1128/JB.00508-17. Print 2018 Jan 15.


Oral Biofilms: Pathogens, Matrix, and Polymicrobial Interactions in Microenvironments.

Bowen WH, Burne RA, Wu H, Koo H.

Trends Microbiol. 2018 Mar;26(3):229-242. doi: 10.1016/j.tim.2017.09.008. Epub 2017 Oct 30. Review.


Oxidative Stressors Modify the Response of Streptococcus mutans to Its Competence Signal Peptides.

De Furio M, Ahn SJ, Burne RA, Hagen SJ.

Appl Environ Microbiol. 2017 Oct 31;83(22). pii: e01345-17. doi: 10.1128/AEM.01345-17. Print 2017 Nov 15.


Adjustment for time-dependent unmeasured confounders in marginal structural Cox models using validation sample data.

Burne RM, Abrahamowicz M.

Stat Methods Med Res. 2019 Feb;28(2):357-371. doi: 10.1177/0962280217726800. Epub 2017 Aug 24.


Coordinated Regulation of the EIIMan and fruRKI Operons of Streptococcus mutans by Global and Fructose-Specific Pathways.

Zeng L, Chakraborty B, Farivar T, Burne RA.

Appl Environ Microbiol. 2017 Oct 17;83(21). pii: e01403-17. doi: 10.1128/AEM.01403-17. Print 2017 Nov 1.


Intercellular Communication via the comX-Inducing Peptide (XIP) of Streptococcus mutans.

Kaspar J, Underhill SAM, Shields RC, Reyes A, Rosenzweig S, Hagen SJ, Burne RA.

J Bacteriol. 2017 Oct 3;199(21). pii: e00404-17. doi: 10.1128/JB.00404-17. Print 2017 Nov 1.


RNA-Seq Reveals Enhanced Sugar Metabolism in Streptococcus mutans Co-cultured with Candida albicans within Mixed-Species Biofilms.

He J, Kim D, Zhou X, Ahn SJ, Burne RA, Richards VP, Koo H.

Front Microbiol. 2017 Jun 8;8:1036. doi: 10.3389/fmicb.2017.01036. eCollection 2017.


Effects of Arginine on Streptococcus mutans Growth, Virulence Gene Expression, and Stress Tolerance.

Chakraborty B, Burne RA.

Appl Environ Microbiol. 2017 Jul 17;83(15). pii: e00496-17. doi: 10.1128/AEM.00496-17. Print 2017 Aug 1.


Microbiomes of Site-Specific Dental Plaques from Children with Different Caries Status.

Richards VP, Alvarez AJ, Luce AR, Bedenbaugh M, Mitchell ML, Burne RA, Nascimento MM.

Infect Immun. 2017 Jul 19;85(8). pii: e00106-17. doi: 10.1128/IAI.00106-17. Print 2017 Aug.


CcpA and CodY Coordinate Acetate Metabolism in Streptococcus mutans.

Kim JN, Burne RA.

Appl Environ Microbiol. 2017 Mar 17;83(7). pii: e03274-16. doi: 10.1128/AEM.03274-16. Print 2017 Apr 1.


An Essential Role for (p)ppGpp in the Integration of Stress Tolerance, Peptide Signaling, and Competence Development in Streptococcus mutans.

Kaspar J, Kim JN, Ahn SJ, Burne RA.

Front Microbiol. 2016 Jul 28;7:1162. doi: 10.3389/fmicb.2016.01162. eCollection 2016.


Growth of Streptococcus mutans in Biofilms Alters Peptide Signaling at the Sub-population Level.

Shields RC, Burne RA.

Front Microbiol. 2016 Jul 15;7:1075. doi: 10.3389/fmicb.2016.01075. eCollection 2016.


Martingale residual-based method to control for confounders measured only in a validation sample in time-to-event analysis.

Burne RM, Abrahamowicz M.

Stat Med. 2016 Nov 10;35(25):4588-4606. doi: 10.1002/sim.7012. Epub 2016 Jun 16.


Effects of Carbohydrate Source on Genetic Competence in Streptococcus mutans.

Moye ZD, Son M, Rosa-Alberty AE, Zeng L, Ahn SJ, Hagen SJ, Burne RA.

Appl Environ Microbiol. 2016 Jul 15;82(15):4821-4834. doi: 10.1128/AEM.01205-16. Print 2016 Aug 1.


Amino Sugars Enhance the Competitiveness of Beneficial Commensals with Streptococcus mutans through Multiple Mechanisms.

Zeng L, Farivar T, Burne RA.

Appl Environ Microbiol. 2016 May 31;82(12):3671-82. doi: 10.1128/AEM.00637-16. Print 2016 Jun 15.


The missing cause approach to unmeasured confounding in pharmacoepidemiology.

Abrahamowicz M, Bjerre LM, Beauchamp ME, LeLorier J, Burne R.

Stat Med. 2016 Mar 30;35(7):1001-16. doi: 10.1002/sim.6818. Epub 2016 Jan 14.


A Highly Arginolytic Streptococcus Species That Potently Antagonizes Streptococcus mutans.

Huang X, Palmer SR, Ahn SJ, Richards VP, Williams ML, Nascimento MM, Burne RA.

Appl Environ Microbiol. 2016 Jan 29;82(7):2187-201. doi: 10.1128/AEM.03887-15.


Sucrose- and Fructose-Specific Effects on the Transcriptome of Streptococcus mutans, as Determined by RNA Sequencing.

Zeng L, Burne RA.

Appl Environ Microbiol. 2015 Oct 16;82(1):146-56. doi: 10.1128/AEM.02681-15. Print 2016 Jan 1.


Bidirectional signaling in the competence regulatory pathway of Streptococcus mutans.

Son M, Shields RC, Ahn SJ, Burne RA, Hagen SJ.

FEMS Microbiol Lett. 2015 Oct;362(19). pii: fnv159. doi: 10.1093/femsle/fnv159. Epub 2015 Sep 10.


NagR Differentially Regulates the Expression of the glmS and nagAB Genes Required for Amino Sugar Metabolism by Streptococcus mutans.

Zeng L, Burne RA.

J Bacteriol. 2015 Nov;197(22):3533-44. doi: 10.1128/JB.00606-15. Epub 2015 Aug 31.


Conserved and divergent functions of RcrRPQ in Streptococcus gordonii and S. mutans.

Shields RC, Burne RA.

FEMS Microbiol Lett. 2015 Aug;362(16). pii: fnv119. doi: 10.1093/femsle/fnv119. Epub 2015 Jul 30.


Pluronics-Formulated Farnesol Promotes Efficient Killing and Demonstrates Novel Interactions with Streptococcus mutans Biofilms.

Mogen AB, Chen F, Ahn SJ, Burne RA, Wang D, Rice KC.

PLoS One. 2015 Jul 29;10(7):e0133886. doi: 10.1371/journal.pone.0133886. eCollection 2015.


Post-transcriptional regulation by distal Shine-Dalgarno sequences in the grpE-dnaK intergenic region of Streptococcus mutans.

Palmer SR, Burne RA.

Mol Microbiol. 2015 Oct;98(2):302-17. doi: 10.1111/mmi.13122. Epub 2015 Sep 4.

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