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Items: 1 to 50 of 459

1.

Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress.

Zhao JL, Zhang LQ, Liu N, Xu S, Yue ZL, Zhang LL, Deng Z, Burlingame AL, Sun DY, Wang ZY, Sun Y, Zhang SW.

Plant Cell. 2019 Jun 20. pii: tpc.00706.2018. doi: 10.1105/tpc.18.00706. [Epub ahead of print]

PMID:
31221736
2.

A two-step probing method to compare lysine accessibility across macromolecular complex conformations.

MacRae AJ, Coltri P, Hrabeta-Robinson E, Chalkley RJ, Burlingame AL, Jurica MS.

RNA Biol. 2019 Jun 29:1-9. doi: 10.1080/15476286.2019.1632777. [Epub ahead of print]

PMID:
31213125
3.

Phosphoregulation of the oncogenic protein regulator of cytokinesis 1 (PRC1) by the atypical CDK16/CCNY complex.

Hernández-Ortega S, Sánchez-Botet A, Quandt E, Masip N, Gasa L, Verde G, Jiménez J, Levin RS, Rutaganira FU, Burlingame AL, Wolfgeher D, Ribeiro MPC, Kron SJ, Shokat KM, Clotet J.

Exp Mol Med. 2019 Apr 16;51(4):44. doi: 10.1038/s12276-019-0242-2.

4.

Probing the Interactome of Corticotropin-Releasing Factor Receptor Heteromers Using Mass Spectrometry.

Hasdemir B, Oses-Prieto JA, Burlingame A, Bhargava A.

Methods Mol Biol. 2019;1947:269-285. doi: 10.1007/978-1-4939-9121-1_15.

PMID:
30969422
5.

Phosphorylation at distinct subcellular locations underlies specificity in mTORC2-mediated activation of SGK1 and Akt.

Gleason CE, Oses-Prieto JA, Li KH, Saha B, Situ G, Burlingame AL, Pearce D.

J Cell Sci. 2019 Apr 9;132(7). pii: jcs224931. doi: 10.1242/jcs.224931.

PMID:
30837283
6.

Mechanisms underlying the synaptic trafficking of the glutamate delta receptor GluD1.

Tao W, Ma C, Bemben MA, Li KH, Burlingame AL, Zhang M, Nicoll RA.

Mol Psychiatry. 2019 Mar 1. doi: 10.1038/s41380-019-0378-4. [Epub ahead of print]

PMID:
30824864
7.

For the sake of science.

Gierasch LM, Davidson NO, Rye KA, Burlingame AL.

J Lipid Res. 2019 Apr;60(4):719-720. doi: 10.1194/jlr.E093245. Epub 2019 Feb 13. No abstract available.

8.

For the Sake of Science.

Gierasch LM, Davidson NO, Rye KA, Burlingame AL.

Mol Cell Proteomics. 2019 Mar;18(3):406-407. doi: 10.1074/mcp.E119.001384. Epub 2019 Feb 13. No abstract available.

PMID:
30760536
9.

For the sake of science.

Gierasch LM, Davidson NO, Rye KA, Burlingame AL.

J Biol Chem. 2019 Feb 22;294(8):2976. doi: 10.1074/jbc.E119.007916. Epub 2019 Feb 13. No abstract available.

10.

The lineage stability and suppressive program of regulatory T cells require protein O-GlcNAcylation.

Liu B, Salgado OC, Singh S, Hippen KL, Maynard JC, Burlingame AL, Ball LE, Blazar BR, Farrar MA, Hogquist KA, Ruan HB.

Nat Commun. 2019 Jan 21;10(1):354. doi: 10.1038/s41467-019-08300-3.

11.

Chemically reprogramming the phospho-transfer reaction to crosslink protein kinases to their substrates.

Wong AW, Urisman A, Burlingame AL, Shokat KM.

Protein Sci. 2019 Mar;28(3):654-662. doi: 10.1002/pro.3570. Epub 2019 Jan 31.

PMID:
30636329
12.

Histone H3 binding to the PHD1 domain of histone demethylase KDM5A enables active site remodeling.

Longbotham JE, Chio CM, Dharmarajan V, Trnka MJ, Torres IO, Goswami D, Ruiz K, Burlingame AL, Griffin PR, Fujimori DG.

Nat Commun. 2019 Jan 9;10(1):94. doi: 10.1038/s41467-018-07829-z.

13.

Chemically induced vesiculation as a platform for studying TMEM16F activity.

Han TW, Ye W, Bethel NP, Zubia M, Kim A, Li KH, Burlingame AL, Grabe M, Jan YN, Jan LY.

Proc Natl Acad Sci U S A. 2019 Jan 22;116(4):1309-1318. doi: 10.1073/pnas.1817498116. Epub 2019 Jan 8.

14.

Tau/MAPT disease-associated variant A152T alters tau function and toxicity via impaired retrograde axonal transport.

Butler VJ, Salazar DA, Soriano-Castell D, Alves-Ferreira M, Dennissen FJA, Vohra M, Oses-Prieto JA, Li KH, Wang AL, Jing B, Li B, Groisman A, Gutierrez E, Mooney S, Burlingame AL, Ashrafi K, Mandelkow EM, Encalada SE, Kao AW.

Hum Mol Genet. 2019 May 1;28(9):1498-1514. doi: 10.1093/hmg/ddy442.

15.

A Viral Protein Restricts Drosophila RNAi Immunity by Regulating Argonaute Activity and Stability.

Nayak A, Kim DY, Trnka MJ, Kerr CH, Lidsky PV, Stanley DJ, Rivera BM, Li KH, Burlingame AL, Jan E, Frydman J, Gross JD, Andino R.

Cell Host Microbe. 2018 Oct 10;24(4):542-557.e9. doi: 10.1016/j.chom.2018.09.006.

PMID:
30308158
16.

Targeting CD46 for both adenocarcinoma and neuroendocrine prostate cancer.

Su Y, Liu Y, Behrens CR, Bidlingmaier S, Lee NK, Aggarwal R, Sherbenou DW, Burlingame AL, Hann BC, Simko JP, Premasekharan G, Paris PL, Shuman MA, Seo Y, Small EJ, Liu B.

JCI Insight. 2018 Sep 6;3(17). pii: 121497. doi: 10.1172/jci.insight.121497. eCollection 2018 Sep 6.

17.

Axonal G3BP1 stress granule protein limits axonal mRNA translation and nerve regeneration.

Sahoo PK, Lee SJ, Jaiswal PB, Alber S, Kar AN, Miller-Randolph S, Taylor EE, Smith T, Singh B, Ho TS, Urisman A, Chand S, Pena EA, Burlingame AL, Woolf CJ, Fainzilber M, English AW, Twiss JL.

Nat Commun. 2018 Aug 22;9(1):3358. doi: 10.1038/s41467-018-05647-x.

18.

hnRNPs Interacting with mRNA Localization Motifs Define Axonal RNA Regulons.

Lee SJ, Oses-Prieto JA, Kawaguchi R, Sahoo PK, Kar AN, Rozenbaum M, Oliver D, Chand S, Ji H, Shtutman M, Miller-Randolph S, Taylor RJ, Fainzilber M, Coppola G, Burlingame AL, Twiss JL.

Mol Cell Proteomics. 2018 Nov;17(11):2091-2106. doi: 10.1074/mcp.RA118.000603. Epub 2018 Jul 23.

PMID:
30038033
19.

The lincRNA MIRAT binds to IQGAP1 and modulates the MAPK pathway in NRAS mutant melanoma.

Sanlorenzo M, Vujic I, Esteve-Puig R, Lai K, Vujic M, Lin K, Posch C, Dimon M, Moy A, Zekhtser M, Johnston K, Gho D, Ho W, Gajjala A, Oses Prieto J, Burlingame A, Daud A, Rappersberger K, Ortiz-Urda S.

Sci Rep. 2018 Jul 19;8(1):10902. doi: 10.1038/s41598-018-27643-3.

20.

Schwann cell O-GlcNAcylation promotes peripheral nerve remyelination via attenuation of the AP-1 transcription factor JUN.

Kim S, Maynard JC, Strickland A, Burlingame AL, Milbrandt J.

Proc Natl Acad Sci U S A. 2018 Jul 31;115(31):8019-8024. doi: 10.1073/pnas.1805538115. Epub 2018 Jul 16.

21.

Gaining an Easy Visual Grasp on MCP Content.

Burlingame A, Carr S, Gingras AC.

Mol Cell Proteomics. 2018 Jul;17(7):1259-1260. doi: 10.1074/mcp.E118.000916. No abstract available.

22.

Arginine methylation of SMAD7 by PRMT1 in TGF-β-induced epithelial-mesenchymal transition and epithelial stem-cell generation.

Katsuno Y, Qin J, Oses-Prieto J, Wang H, Jackson-Weaver O, Zhang T, Lamouille S, Wu J, Burlingame A, Xu J, Derynck R.

J Biol Chem. 2018 Aug 24;293(34):13059-13072. doi: 10.1074/jbc.RA118.002027. Epub 2018 Jun 15.

PMID:
29907569
23.

The ER membrane protein complex interacts cotranslationally to enable biogenesis of multipass membrane proteins.

Shurtleff MJ, Itzhak DN, Hussmann JA, Schirle Oakdale NT, Costa EA, Jonikas M, Weibezahn J, Popova KD, Jan CH, Sinitcyn P, Vembar SS, Hernandez H, Cox J, Burlingame AL, Brodsky JL, Frost A, Borner GH, Weissman JS.

Elife. 2018 May 29;7. pii: e37018. doi: 10.7554/eLife.37018.

24.

Translatome Regulation in Neuronal Injury and Axon Regrowth.

Rozenbaum M, Rajman M, Rishal I, Koppel I, Koley S, Medzihradszky KF, Oses-Prieto JA, Kawaguchi R, Amieux PS, Burlingame AL, Coppola G, Fainzilber M.

eNeuro. 2018 May 10;5(2). pii: ENEURO.0276-17.2018. doi: 10.1523/ENEURO.0276-17.2018. eCollection 2018 Mar-Apr.

25.

The nucleosomal acidic patch relieves auto-inhibition by the ISWI remodeler SNF2h.

Gamarra N, Johnson SL, Trnka MJ, Burlingame AL, Narlikar GJ.

Elife. 2018 Apr 17;7. pii: e35322. doi: 10.7554/eLife.35322.

26.

Locally translated mTOR controls axonal local translation in nerve injury.

Terenzio M, Koley S, Samra N, Rishal I, Zhao Q, Sahoo PK, Urisman A, Marvaldi L, Oses-Prieto JA, Forester C, Gomes C, Kalinski AL, Di Pizio A, Doron-Mandel E, Perry RB, Koppel I, Twiss JL, Burlingame AL, Fainzilber M.

Science. 2018 Mar 23;359(6382):1416-1421. doi: 10.1126/science.aan1053.

27.

The Transcriptionally Permissive Chromatin State of Embryonic Stem Cells Is Acutely Tuned to Translational Output.

Bulut-Karslioglu A, Macrae TA, Oses-Prieto JA, Covarrubias S, Percharde M, Ku G, Diaz A, McManus MT, Burlingame AL, Ramalho-Santos M.

Cell Stem Cell. 2018 Mar 1;22(3):369-383.e8. doi: 10.1016/j.stem.2018.02.004.

28.

Prp8 positioning of U5 snRNA is linked to 5' splice site recognition.

MacRae AJ, Mayerle M, Hrabeta-Robinson E, Chalkley RJ, Guthrie C, Burlingame AL, Jurica MS.

RNA. 2018 Jun;24(6):769-777. doi: 10.1261/rna.065458.117. Epub 2018 Feb 27.

29.

Revealing nascent proteomics in signaling pathways and cell differentiation.

Forester CM, Zhao Q, Phillips NJ, Urisman A, Chalkley RJ, Oses-Prieto JA, Zhang L, Ruggero D, Burlingame AL.

Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):2353-2358. doi: 10.1073/pnas.1707514115. Epub 2018 Feb 21.

30.

A molecular cascade modulates MAP1B and confers resistance to mTOR inhibition in human glioblastoma.

Laks DR, Oses-Prieto JA, Alvarado AG, Nakashima J, Chand S, Azzam DB, Gholkar AA, Sperry J, Ludwig K, Condro MC, Nazarian S, Cardenas A, Shih MYS, Damoiseaux R, France B, Orozco N, Visnyei K, Crisman TJ, Gao F, Torres JZ, Coppola G, Burlingame AL, Kornblum HI.

Neuro Oncol. 2018 May 18;20(6):764-775. doi: 10.1093/neuonc/nox215.

31.

αII Spectrin Forms a Periodic Cytoskeleton at the Axon Initial Segment and Is Required for Nervous System Function.

Huang CY, Zhang C, Ho TS, Oses-Prieto J, Burlingame AL, Lalonde J, Noebels JL, Leterrier C, Rasband MN.

J Neurosci. 2017 Nov 22;37(47):11311-11322. doi: 10.1523/JNEUROSCI.2112-17.2017. Epub 2017 Oct 16.

32.

Hypoxia-ischemia modifies postsynaptic GluN2B-containing NMDA receptor complexes in the neonatal mouse brain.

Lu F, Shao G, Wang Y, Guan S, Burlingame AL, Liu X, Liang X, Knox R, Ferriero DM, Jiang X.

Exp Neurol. 2018 Jan;299(Pt A):65-74. doi: 10.1016/j.expneurol.2017.10.005. Epub 2017 Oct 6.

33.

Peripheral Elevation of a Klotho Fragment Enhances Brain Function and Resilience in Young, Aging, and α-Synuclein Transgenic Mice.

Leon J, Moreno AJ, Garay BI, Chalkley RJ, Burlingame AL, Wang D, Dubal DB.

Cell Rep. 2017 Aug 8;20(6):1360-1371. doi: 10.1016/j.celrep.2017.07.024.

34.

Actin cytoskeleton-dependent regulation of corticotropin-releasing factor receptor heteromers.

Hasdemir B, Mahajan S, Oses-Prieto J, Chand S, Woolley M, Burlingame A, Grammatopoulos DK, Bhargava A.

Mol Biol Cell. 2017 Sep 1;28(18):2386-2399. doi: 10.1091/mbc.E16-11-0778. Epub 2017 Jul 12.

35.

Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin.

Larson AG, Elnatan D, Keenen MM, Trnka MJ, Johnston JB, Burlingame AL, Agard DA, Redding S, Narlikar GJ.

Nature. 2017 Jul 13;547(7662):236-240. doi: 10.1038/nature22822. Epub 2017 Jun 21.

36.

Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones.

Zhou CY, Stoddard CI, Johnston JB, Trnka MJ, Echeverria I, Palovcak E, Sali A, Burlingame AL, Cheng Y, Narlikar GJ.

Cell Rep. 2017 Jun 6;19(10):2033-2044. doi: 10.1016/j.celrep.2017.05.029.

37.

PPKs mediate direct signal transfer from phytochrome photoreceptors to transcription factor PIF3.

Ni W, Xu SL, González-Grandío E, Chalkley RJ, Huhmer AFR, Burlingame AL, Wang ZY, Quail PH.

Nat Commun. 2017 May 11;8:15236. doi: 10.1038/ncomms15236.

38.

Proteomic Analysis of Mouse Cortex Postsynaptic Density following Neonatal Brain Hypoxia-Ischemia.

Shao G, Wang Y, Guan S, Burlingame AL, Lu F, Knox R, Ferriero DM, Jiang X.

Dev Neurosci. 2017;39(1-4):66-81. doi: 10.1159/000456030. Epub 2017 Mar 18.

39.

Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.

Xu SL, Chalkley RJ, Maynard JC, Wang W, Ni W, Jiang X, Shin K, Cheng L, Savage D, Hühmer AF, Burlingame AL, Wang ZY.

Proc Natl Acad Sci U S A. 2017 Feb 21;114(8):E1536-E1543. doi: 10.1073/pnas.1610452114. Epub 2017 Feb 2.

40.

Reduced Insulin/IGF-1 Signaling Restores the Dynamic Properties of Key Stress Granule Proteins during Aging.

Lechler MC, Crawford ED, Groh N, Widmaier K, Jung R, Kirstein J, Trinidad JC, Burlingame AL, David DC.

Cell Rep. 2017 Jan 10;18(2):454-467. doi: 10.1016/j.celrep.2016.12.033.

41.

TAOK2 Kinase Mediates PSD95 Stability and Dendritic Spine Maturation through Septin7 Phosphorylation.

Yadav S, Oses-Prieto JA, Peters CJ, Zhou J, Pleasure SJ, Burlingame AL, Jan LY, Jan YN.

Neuron. 2017 Jan 18;93(2):379-393. doi: 10.1016/j.neuron.2016.12.006. Epub 2017 Jan 5.

42.

Broad-Spectrum Kinase Profiling in Live Cells with Lysine-Targeted Sulfonyl Fluoride Probes.

Zhao Q, Ouyang X, Wan X, Gajiwala KS, Kath JC, Jones LH, Burlingame AL, Taunton J.

J Am Chem Soc. 2017 Jan 18;139(2):680-685. doi: 10.1021/jacs.6b08536. Epub 2017 Jan 4.

43.

An Optimized Chromatographic Strategy for Multiplexing In Parallel Reaction Monitoring Mass Spectrometry: Insights from Quantitation of Activated Kinases.

Urisman A, Levin RS, Gordan JD, Webber JT, Hernandez H, Ishihama Y, Shokat KM, Burlingame AL.

Mol Cell Proteomics. 2017 Feb;16(2):265-277. doi: 10.1074/mcp.M116.058172. Epub 2016 Dec 11.

44.

Quantitative Proteomics Reveals Fundamental Regulatory Differences in Oncogenic HRAS and Isocitrate Dehydrogenase (IDH1) Driven Astrocytoma.

Doll S, Urisman A, Oses-Prieto JA, Arnott D, Burlingame AL.

Mol Cell Proteomics. 2017 Jan;16(1):39-56. doi: 10.1074/mcp.M116.063883. Epub 2016 Nov 10.

45.

Cysteine S-linked N-acetylglucosamine (S-GlcNAcylation), A New Post-translational Modification in Mammals.

Maynard JC, Burlingame AL, Medzihradszky KF.

Mol Cell Proteomics. 2016 Nov;15(11):3405-3411. Epub 2016 Aug 24.

46.

Antiinflammatory Effects of Budesonide in Human Fetal Lung.

Barrette AM, Roberts JK, Chapin C, Egan EA, Segal MR, Oses-Prieto JA, Chand S, Burlingame AL, Ballard PL.

Am J Respir Cell Mol Biol. 2016 Nov;55(5):623-632.

47.

Immunopurification and Mass Spectrometry Identifies Protein Phosphatase 2A (PP2A) and BIN2/GSK3 as Regulators of AKS Transcription Factors in Arabidopsis.

Bu SL, Liu C, Liu N, Zhao JL, Ai LF, Chi H, Li KL, Chien CW, Burlingame AL, Zhang SW, Wang ZY.

Mol Plant. 2017 Feb 13;10(2):345-348. doi: 10.1016/j.molp.2016.09.016. Epub 2016 Oct 18. No abstract available.

48.

Schwann Cell O-GlcNAc Glycosylation Is Required for Myelin Maintenance and Axon Integrity.

Kim S, Maynard JC, Sasaki Y, Strickland A, Sherman DL, Brophy PJ, Burlingame AL, Milbrandt J.

J Neurosci. 2016 Sep 14;36(37):9633-46. doi: 10.1523/JNEUROSCI.1235-16.2016.

49.

Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex.

Robinson PJ, Trnka MJ, Bushnell DA, Davis RE, Mattei PJ, Burlingame AL, Kornberg RD.

Cell. 2016 Sep 8;166(6):1411-1422.e16. doi: 10.1016/j.cell.2016.08.050.

50.

Mouse MORC3 is a GHKL ATPase that localizes to H3K4me3 marked chromatin.

Li S, Yen L, Pastor WA, Johnston JB, Du J, Shew CJ, Liu W, Ho J, Stender B, Clark AT, Burlingame AL, Daxinger L, Patel DJ, Jacobsen SE.

Proc Natl Acad Sci U S A. 2016 Aug 30;113(35):E5108-16. doi: 10.1073/pnas.1609709113. Epub 2016 Aug 15.

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