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Items: 1 to 50 of 405

1.

Complete Genome Sequences of Six Novel Macaca mulatta Papillomavirus Types Isolated from Genital Sites of Rhesus Monkeys in Hong Kong SAR, China.

Long T, Wong PY, Ho WCS, Burk RD, Chan PKS, Chen Z.

Microbiol Resour Announc. 2018 Dec 6;7(22). pii: e01414-18. doi: 10.1128/MRA.01414-18. eCollection 2018 Dec.

2.

Niche adaptation and viral transmission of human papillomaviruses from archaic hominins to modern humans.

Chen Z, DeSalle R, Schiffman M, Herrero R, Wood CE, Ruiz JC, Clifford GM, Chan PKS, Burk RD.

PLoS Pathog. 2018 Nov 1;14(11):e1007352. doi: 10.1371/journal.ppat.1007352. eCollection 2018 Nov.

3.

Gut microbiota and plasma metabolites associated with diabetes in women with, or at high risk for, HIV infection.

Moon JY, Zolnik CP, Wang Z, Qiu Y, Usyk M, Wang T, Kizer JR, Landay AL, Kurland IJ, Anastos K, Kaplan RC, Burk RD, Qi Q.

EBioMedicine. 2018 Nov;37:392-400. doi: 10.1016/j.ebiom.2018.10.037. Epub 2018 Oct 23.

4.

Diversity of macaque microbiota compared to the human counterparts.

Chen Z, Yeoh YK, Hui M, Wong PY, Chan MCW, Ip M, Yu J, Burk RD, Chan FKL, Chan PKS.

Sci Rep. 2018 Oct 22;8(1):15573. doi: 10.1038/s41598-018-33950-6.

5.

Methylation of High-Risk Human Papillomavirus Genomes Are Associated with Cervical Precancer in HIV-Positive Women.

Gradissimo A, Lam J, Attonito JD, Palefsky J, Massad LS, Xie X, Eltoum IE, Rahangdale L, Fischl MA, Anastos K, Minkoff H, Xue X, D'Souza G, Flowers LC, Colie C, Shrestha S, Hessol NA, Strickler HD, Burk RD.

Cancer Epidemiol Biomarkers Prev. 2018 Dec;27(12):1407-1415. doi: 10.1158/1055-9965.EPI-17-1051. Epub 2018 Sep 20.

PMID:
30237251
6.

Racial differences in human papilloma virus types amongst United States women with HIV and cervical precancer.

Keller MJ, Burk RD, Massad LS, Eltoum IE, Hessol NA, Anastos K, Xie X, Minkoff H, Xue X, Reimers LL, Kuniholm M, DʼSouza G, Colie C, Aouizerat B, Palefsky JM, Strickler HD.

AIDS. 2018 Nov 28;32(18):2821-2826. doi: 10.1097/QAD.0000000000002005.

PMID:
30234608
7.

Comparison of Fecal Collection Methods for Microbiome and Metabolomics Studies.

Wang Z, Zolnik CP, Qiu Y, Usyk M, Wang T, Strickler HD, Isasi CR, Kaplan RC, Kurland IJ, Qi Q, Burk RD.

Front Cell Infect Microbiol. 2018 Aug 28;8:301. doi: 10.3389/fcimb.2018.00301. eCollection 2018.

8.

Oral Alpha, Beta, and Gamma HPV Types and Risk of Incident Esophageal Cancer.

Agalliu I, Chen Z, Wang T, Hayes RB, Freedman ND, Gapstur SM, Burk RD.

Cancer Epidemiol Biomarkers Prev. 2018 Oct;27(10):1168-1175. doi: 10.1158/1055-9965.EPI-18-0287. Epub 2018 Aug 7.

PMID:
30087123
9.

ICTV Virus Taxonomy Profile: Papillomaviridae.

Van Doorslaer K, Chen Z, Bernard HU, Chan PKS, DeSalle R, Dillner J, Forslund O, Haga T, McBride AA, Villa LL, Burk RD, Ictv Report Consortium.

J Gen Virol. 2018 Aug;99(8):989-990. doi: 10.1099/jgv.0.001105. Epub 2018 Jun 21.

10.

Gut Microbial-Related Choline Metabolite Trimethylamine-N-Oxide Is Associated With Progression of Carotid Artery Atherosclerosis in HIV Infection.

Shan Z, Clish CB, Hua S, Scott JM, Hanna DB, Burk RD, Haberlen SA, Shah SJ, Margolick JB, Sears CL, Post WS, Landay AL, Lazar JM, Hodis HN, Anastos K, Kaplan RC, Qi Q.

J Infect Dis. 2018 Sep 22;218(9):1474-1479. doi: 10.1093/infdis/jiy356.

PMID:
29912352
11.

Association of an intact E2 gene with higher HPV viral load, higher viral oncogene expression, and improved clinical outcome in HPV16 positive head and neck squamous cell carcinoma.

Anayannis NV, Schlecht NF, Ben-Dayan M, Smith RV, Belbin TJ, Ow TJ, Blakaj DM, Burk RD, Leonard SM, Woodman CB, Parish JL, Prystowsky MB.

PLoS One. 2018 Feb 16;13(2):e0191581. doi: 10.1371/journal.pone.0191581. eCollection 2018.

12.

The Intersection of HPV Epidemiology, Genomics and Mechanistic Studies of HPV-Mediated Carcinogenesis.

Mirabello L, Clarke MA, Nelson CW, Dean M, Wentzensen N, Yeager M, Cullen M, Boland JF; NCI HPV Workshop, Schiffman M, Burk RD.

Viruses. 2018 Feb 13;10(2). pii: E80. doi: 10.3390/v10020080.

13.

Human Papillomavirus DNA Methylation as a Biomarker for Cervical Precancer: Consistency across 12 Genotypes and Potential Impact on Management of HPV-Positive Women.

Clarke MA, Gradissimo A, Schiffman M, Lam J, Sollecito CC, Fetterman B, Lorey T, Poitras N, Raine-Bennett TR, Castle PE, Wentzensen N, Burk RD.

Clin Cancer Res. 2018 May 1;24(9):2194-2202. doi: 10.1158/1078-0432.CCR-17-3251. Epub 2018 Feb 2.

PMID:
29420222
14.

Plasma Tryptophan-Kynurenine Metabolites Are Altered in Human Immunodeficiency Virus Infection and Associated With Progression of Carotid Artery Atherosclerosis.

Qi Q, Hua S, Clish CB, Scott JM, Hanna DB, Wang T, Haberlen SA, Shah SJ, Glesby MJ, Lazar JM, Burk RD, Hodis HN, Landay AL, Post WS, Anastos K, Kaplan RC.

Clin Infect Dis. 2018 Jul 2;67(2):235-242. doi: 10.1093/cid/ciy053.

PMID:
29415228
15.

T cell receptor repertoire among women who cleared and failed to clear cervical human papillomavirus infection: An exploratory proof-of-principle study.

Lang Kuhs KA, Lin SW, Hua X, Schiffman M, Burk RD, Rodriguez AC, Herrero R, Abnet CC, Freedman ND, Pinto LA, Hamm D, Robins H, Hildesheim A, Shi J, Safaeian M.

PLoS One. 2018 Jan 31;13(1):e0178167. doi: 10.1371/journal.pone.0178167. eCollection 2018.

16.

Classification and evolution of human papillomavirus genome variants: Alpha-5 (HPV26, 51, 69, 82), Alpha-6 (HPV30, 53, 56, 66), Alpha-11 (HPV34, 73), Alpha-13 (HPV54) and Alpha-3 (HPV61).

Chen Z, Schiffman M, Herrero R, DeSalle R, Anastos K, Segondy M, Sahasrabuddhe VV, Gravitt PE, Hsing AW, Chan PKS, Burk RD.

Virology. 2018 Mar;516:86-101. doi: 10.1016/j.virol.2018.01.002. Epub 2018 Jan 11.

PMID:
29331867
17.

Association of Oral Microbiome With Risk for Incident Head and Neck Squamous Cell Cancer.

Hayes RB, Ahn J, Fan X, Peters BA, Ma Y, Yang L, Agalliu I, Burk RD, Ganly I, Purdue MP, Freedman ND, Gapstur SM, Pei Z.

JAMA Oncol. 2018 Mar 1;4(3):358-365. doi: 10.1001/jamaoncol.2017.4777.

PMID:
29327043
18.

Complete Genome Sequences of Three Novel Saimiri sciureus Papillomavirus Types Isolated from the Cervicovaginal Region of Squirrel Monkeys.

Chen Z, Wood CE, Abee CR, Burk RD.

Genome Announc. 2018 Jan 4;6(1). pii: e01400-17. doi: 10.1128/genomeA.01400-17.

19.

Novel ITS1 Fungal Primers for Characterization of the Mycobiome.

Usyk M, Zolnik CP, Patel H, Levi MH, Burk RD.

mSphere. 2017 Dec 13;2(6). pii: e00488-17. doi: 10.1128/mSphere.00488-17. eCollection 2017 Nov-Dec.

20.

HPV16 E7 Genetic Conservation Is Critical to Carcinogenesis.

Mirabello L, Yeager M, Yu K, Clifford GM, Xiao Y, Zhu B, Cullen M, Boland JF, Wentzensen N, Nelson CW, Raine-Bennett T, Chen Z, Bass S, Song L, Yang Q, Steinberg M, Burdett L, Dean M, Roberson D, Mitchell J, Lorey T, Franceschi S, Castle PE, Walker J, Zuna R, Kreimer AR, Beachler DC, Hildesheim A, Gonzalez P, Porras C, Burk RD, Schiffman M.

Cell. 2017 Sep 7;170(6):1164-1174.e6. doi: 10.1016/j.cell.2017.08.001.

21.

Ancient Evolution and Dispersion of Human Papillomavirus 58 Variants.

Chen Z, Ho WCS, Boon SS, Law PTY, Chan MCW, DeSalle R, Burk RD, Chan PKS.

J Virol. 2017 Oct 13;91(21). pii: e01285-17. doi: 10.1128/JVI.01285-17. Print 2017 Nov 1.

22.

Molecular tests potentially improving HPV screening and genotyping for cervical cancer prevention.

Gradíssimo A, Burk RD.

Expert Rev Mol Diagn. 2017 Apr;17(4):379-391. doi: 10.1080/14737159.2017.1293525. Epub 2017 Feb 20. Review.

23.

Therapeutic Vaccine Against Primate Papillomavirus Infections of the Cervix.

Ragonnaud E, Andersson AC, Mariya S, Pedersen AG, Burk RD, Folgori A, Colloca S, Cortese R, Nicosia A, Pamungkas J, Iskandriati D, Holst PJ.

J Immunother. 2017 Feb/Mar;40(2):51-61. doi: 10.1097/CJI.0000000000000153.

PMID:
28166180
24.

Cervical cancer incidence after screening with HPV, cytology, and visual methods: 18-Year follow-up of the Guanacaste cohort.

Rodríguez AC, Ávila C, Herrero R, Hildesheim A, Sherman ME, Burk RD, Morales J, Alfaro M, Guillén D, Trejos ME, Vargas RM, Torres G, Schiffman M.

Int J Cancer. 2017 Apr 15;140(8):1926-1934. doi: 10.1002/ijc.30614. Epub 2017 Feb 7.

25.

The association of medication use with clearance or persistence of oral HPV infection.

Lam JO, Sugar EA, Cranston RD, Weber KM, Burk RD, Wiley DJ, Reddy S, Margolick JB, Strickler HD, Wentz A, Jacobson L, Coles CL, Bream JH, Rositch AF, Guo Y, Xiao W, Gillison ML, D'Souza G.

Cancer Causes Control. 2016 Dec;27(12):1491-1498. Epub 2016 Nov 1.

26.

Risk of Delayed Human Papillomavirus Vaccination in Inner-City Adolescent Women.

Schlecht NF, Diaz A, Shankar V, Szporn AH, Wu M, Nucci-Sack A, Peake K, Strickler HD, Burk RD.

J Infect Dis. 2016 Dec 15;214(12):1952-1960. Epub 2016 Oct 12.

27.

Distinct Ecological Niche of Anal, Oral, and Cervical Mucosal Microbiomes in Adolescent Women.

Smith BC, Zolnik CP, Usyk M, Chen Z, Kaiser K, Nucci-Sack A, Peake K, Diaz A, Viswanathan S, Strickler HD, Schlecht NF, Burk RD.

Yale J Biol Med. 2016 Sep 30;89(3):277-284. eCollection 2016 Sep.

28.

A polycomb-mediated epigenetic field defect precedes invasive cervical carcinoma.

Wijetunga NA, Ben-Dayan M, Tozour J, Burk RD, Schlecht NF, Einstein MH, Greally JM.

Oncotarget. 2016 Sep 20;7(38):62133-62143. doi: 10.18632/oncotarget.11390.

29.

The Cervicovaginal Microbiota and Its Associations With Human Papillomavirus Detection in HIV-Infected and HIV-Uninfected Women.

Reimers LL, Mehta SD, Massad LS, Burk RD, Xie X, Ravel J, Cohen MH, Palefsky JM, Weber KM, Xue X, Anastos K, Minkoff H, Atrio J, D'Souza G, Ye Q, Colie C, Zolnik CP, Spear GT, Strickler HD.

J Infect Dis. 2016 Nov 1;214(9):1361-1369. Epub 2016 Aug 11.

30.

Novel epigenetic changes in CDKN2A are associated with progression of cervical intraepithelial neoplasia.

Wijetunga NA, Belbin TJ, Burk RD, Whitney K, Abadi M, Greally JM, Einstein MH, Schlecht NF.

Gynecol Oncol. 2016 Sep;142(3):566-73. doi: 10.1016/j.ygyno.2016.07.006. Epub 2016 Jul 9.

31.

β- and γ-Human Papillomavirus Types and Smoking in Head and Neck Cancer-Reply.

Agalliu I, Wang T, Burk RD.

JAMA Oncol. 2016 May 1;2(5):687-8. doi: 10.1001/jamaoncol.2016.0973. No abstract available.

PMID:
27244681
32.

HPV16 Sublineage Associations With Histology-Specific Cancer Risk Using HPV Whole-Genome Sequences in 3200 Women.

Mirabello L, Yeager M, Cullen M, Boland JF, Chen Z, Wentzensen N, Zhang X, Yu K, Yang Q, Mitchell J, Roberson D, Bass S, Xiao Y, Burdett L, Raine-Bennett T, Lorey T, Castle PE, Burk RD, Schiffman M.

J Natl Cancer Inst. 2016 Apr 29;108(9). pii: djw100. doi: 10.1093/jnci/djw100. Print 2016 Sep.

33.

Association of serum cytokines with oral HPV clearance.

Lam JO, Bream JH, Sugar EA, Coles CL, Weber KM, Burk RD, Wiley DJ, Cranston RD, Reddy S, Margolick JB, Strickler HD, Wentz A, Jacobson L, Guo Y, Xiao W, Gillison ML, D'Souza G.

Cytokine. 2016 Jul;83:85-91. doi: 10.1016/j.cyto.2016.04.002. Epub 2016 Apr 8.

34.

Global Genomic Diversity of Human Papillomavirus 11 Based on 433 Isolates and 78 Complete Genome Sequences.

Jelen MM, Chen Z, Kocjan BJ, Hošnjak L, Burt FJ, Chan PKS, Chouhy D, Combrinck CE, Estrade C, Fiander A, Garland SM, Giri AA, González JV, Gröning A, Hibbitts S, Luk TNM, Marinic K, Matsukura T, Neumann A, Oštrbenk A, Picconi MA, Sagadin M, Sahli R, Seedat RY, Seme K, Severini A, Sinchi JL, Smahelova J, Tabrizi SN, Tachezy R, Tohme Faybush S, Uloza V, Uloziene I, Wong YW, Židovec Lepej S, Burk RD, Poljak M.

J Virol. 2016 May 12;90(11):5503-5513. doi: 10.1128/JVI.03149-15. Print 2016 Jun 1.

35.

Knowledge about Human Papillomavirus and Time to Complete Vaccination among Vulnerable Female Youth.

Nagpal J, Linares LO, Weiss J, Schlecht NF, Shankar V, Braun-Courville D, Nucci-Sack A, Strickler HD, Burk RD, Diaz A.

J Pediatr. 2016 Apr;171:122-7. doi: 10.1016/j.jpeds.2015.12.070. Epub 2016 Feb 2.

36.

Sholom Wacholder: In Memoriam (1955-2015).

Schiffman M, Burk RD.

Cancer Epidemiol Biomarkers Prev. 2016 Feb;25(2):229-30. doi: 10.1158/1055-9965.EPI-15-1201. Epub 2016 Jan 21. No abstract available.

37.

Associations of Oral α-, β-, and γ-Human Papillomavirus Types With Risk of Incident Head and Neck Cancer.

Agalliu I, Gapstur S, Chen Z, Wang T, Anderson RL, Teras L, Kreimer AR, Hayes RB, Freedman ND, Burk RD.

JAMA Oncol. 2016 Jan 21. doi: 10.1001/jamaoncol.2015.5504. [Epub ahead of print]

38.

Association of High-Risk Human Papillomavirus with Genital Tract Mucosal Immune Factors in HIV-Infected Women.

Buckley N, Huber A, Lo Y, Castle PE, Kemal K, Burk RD, Strickler HD, Einstein MH, Young M, Anastos K, Herold BC.

Am J Reprod Immunol. 2016 Feb;75(2):146-54. doi: 10.1111/aji.12461. Epub 2015 Dec 18.

39.

Deep sequencing of HPV16 genomes: A new high-throughput tool for exploring the carcinogenicity and natural history of HPV16 infection.

Cullen M, Boland JF, Schiffman M, Zhang X, Wentzensen N, Yang Q, Chen Z, Yu K, Mitchell J, Roberson D, Bass S, Burdette L, Machado M, Ravichandran S, Luke B, Machiela MJ, Andersen M, Osentoski M, Laptewicz M, Wacholder S, Feldman A, Raine-Bennett T, Lorey T, Castle PE, Yeager M, Burk RD, Mirabello L.

Papillomavirus Res. 2015 Dec 1;1:3-11.

40.

Cross-protection of the Bivalent Human Papillomavirus (HPV) Vaccine Against Variants of Genetically Related High-Risk HPV Infections.

Harari A, Chen Z, Rodríguez AC, Hildesheim A, Porras C, Herrero R, Wacholder S, Panagiotou OA, Befano B, Burk RD, Schiffman M; Costa Rica HPV Vaccine Trial Group.

J Infect Dis. 2016 Mar 15;213(6):939-47. doi: 10.1093/infdis/jiv519. Epub 2015 Oct 30.

41.

Development of the Diabetes Technology Society Blood Glucose Monitor System Surveillance Protocol.

Klonoff DC, Lias C, Beck S, Parkes JL, Kovatchev B, Vigersky RA, Arreaza-Rubin G, Burk RD, Kowalski A, Little R, Nichols J, Petersen M, Rawlings K, Sacks DB, Sampson E, Scott S, Seley JJ, Slingerland R, Vesper HW.

J Diabetes Sci Technol. 2016 May 3;10(3):697-707. doi: 10.1177/1932296815614587. Print 2016 May.

42.

Association of cervical precancer with human papillomavirus types other than 16 among HIV co-infected women.

Massad LS, Xie X, Burk RD, D'Souza G, Darragh TM, Minkoff H, Colie C, Burian P, Palefsky J, Atrio J, Strickler HD.

Am J Obstet Gynecol. 2016 Mar;214(3):354.e1-6. doi: 10.1016/j.ajog.2015.09.086. Epub 2015 Nov 14.

43.

Neutrophil ageing is regulated by the microbiome.

Zhang D, Chen G, Manwani D, Mortha A, Xu C, Faith JJ, Burk RD, Kunisaki Y, Jang JE, Scheiermann C, Merad M, Frenette PS.

Nature. 2015 Sep 24;525(7570):528-32. doi: 10.1038/nature15367. Epub 2015 Sep 16.

44.

Increased Body Mass Index Associated with Increased Risky Sexual Behaviors.

Gordon LP, Diaz A, Soghomonian C, Nucci-Sack AT, Weiss JM, Strickler HD, Burk RD, Schlecht NF, Ochner CN.

J Pediatr Adolesc Gynecol. 2016 Feb;29(1):42-7. doi: 10.1016/j.jpag.2015.06.003. Epub 2015 Jun 6.

45.

HPV Infection and Cervical Screening in Socially Isolated Indigenous Women Inhabitants of the Amazonian Rainforest.

Fonseca AJ, Taeko D, Chaves TA, Amorim LD, Murari RS, Miranda AE, Chen Z, Burk RD, Ferreira LC.

PLoS One. 2015 Jul 24;10(7):e0133635. doi: 10.1371/journal.pone.0133635. eCollection 2015.

46.

Cervical Precancer Risk in HIV-Infected Women Who Test Positive for Oncogenic Human Papillomavirus Despite a Normal Pap Test.

Keller MJ, Burk RD, Massad LS, Eltoum IE, Hessol NA, Castle PE, Anastos K, Xie X, Minkoff H, Xue X, D'Souza G, Flowers L, Levine AM, Colie C, Rahangdale L, Fischl MA, Palefsky JM, Strickler HD.

Clin Infect Dis. 2015 Nov 15;61(10):1573-81. doi: 10.1093/cid/civ569. Epub 2015 Jul 17.

47.

Oral Lopinavir Use and Human Papillomavirus Infection in HIV-Positive Women.

Lahiri CD, Dugan KB, Xie X, Reimers L, Burk RD, Anastos K, Massad LS, Eltoum IE, Xue X, DʼSouza G, Flowers L, Palefsky JM, Rahangdale L, Strickler HD, Ofotokun I.

J Acquir Immune Defic Syndr. 2015 Oct 1;70(2):e63-6. doi: 10.1097/QAI.0000000000000752. No abstract available.

48.

The Role of Human Papillomavirus Genotyping in Cervical Cancer Screening: A Large-Scale Evaluation of the cobas HPV Test.

Schiffman M, Boyle S, Raine-Bennett T, Katki HA, Gage JC, Wentzensen N, Kornegay JR, Apple R, Aldrich C, Erlich HA, Tam T, Befano B, Burk RD, Castle PE.

Cancer Epidemiol Biomarkers Prev. 2015 Sep;24(9):1304-10. doi: 10.1158/1055-9965.EPI-14-1353. Epub 2015 Jun 18.

49.

Degradation of Human PDZ-Proteins by Human Alphapapillomaviruses Represents an Evolutionary Adaptation to a Novel Cellular Niche.

Van Doorslaer K, DeSalle R, Einstein MH, Burk RD.

PLoS Pathog. 2015 Jun 18;11(6):e1004980. doi: 10.1371/journal.ppat.1004980. eCollection 2015 Jun.

50.

HPV16 CpG methyl-haplotypes are associated with cervix precancer and cancer in the Guanacaste natural history study.

Frimer M, Sun C, McAndrew T, Smith B, Harari A, Chen Z, Mirabello L, Wentzensen N, Goldberg GL, Rodriguez AC, Schiffman M, Burk RD.

Gynecol Oncol. 2015 Jul;138(1):94-100. doi: 10.1016/j.ygyno.2015.05.001. Epub 2015 May 19.

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