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Items: 29

1.

The COPEWELL Rubric: A Self-Assessment Toolkit to Strengthen Community Resilience to Disasters.

Schoch-Spana M, Gill K, Hosangadi D, Slemp C, Burhans R, Zeis J, Carbone EG, Links J.

Int J Environ Res Public Health. 2019 Jul 4;16(13). pii: E2372. doi: 10.3390/ijerph16132372.

2.

Genomic Variants Among Threatened Acropora Corals.

Kitchen SA, Ratan A, Bedoya-Reina OC, Burhans R, Fogarty ND, Miller W, Baums IB.

G3 (Bethesda). 2019 May 7;9(5):1633-1646. doi: 10.1534/g3.119.400125.

3.

Draft Genome Sequence of Anoxybacillusayderensis Strain MT-Cab (Firmicutes).

Thiel V, Tank M, Tomsho LP, Burhans R, Gay SE, Hamilton TL, Schuster SC, Bryant DA.

Genome Announc. 2017 Jun 29;5(26). pii: e00547-17. doi: 10.1128/genomeA.00547-17.

4.

COPEWELL: A Conceptual Framework and System Dynamics Model for Predicting Community Functioning and Resilience After Disasters.

Links JM, Schwartz BS, Lin S, Kanarek N, Mitrani-Reiser J, Sell TK, Watson CR, Ward D, Slemp C, Burhans R, Gill K, Igusa T, Zhao X, Aguirre B, Trainor J, Nigg J, Inglesby T, Carbone E, Kendra JM.

Disaster Med Public Health Prep. 2018 Feb;12(1):127-137. doi: 10.1017/dmp.2017.39. Epub 2017 Jun 21.

PMID:
28633681
5.

Giraffe genome sequence reveals clues to its unique morphology and physiology.

Agaba M, Ishengoma E, Miller WC, McGrath BC, Hudson CN, Bedoya Reina OC, Ratan A, Burhans R, Chikhi R, Medvedev P, Praul CA, Wu-Cavener L, Wood B, Robertson H, Penfold L, Cavener DR.

Nat Commun. 2016 May 17;7:11519. doi: 10.1038/ncomms11519.

6.

Draft Genome Sequence of the Deinococcus-Thermus Bacterium Meiothermus ruber Strain A.

Thiel V, Tomsho LP, Burhans R, Gay SE, Schuster SC, Ward DM, Bryant DA.

Genome Announc. 2015 Mar 26;3(2). pii: e00202-15. doi: 10.1128/genomeA.00202-15.

7.

Draft Genome Sequence of a Sulfide-Oxidizing, Autotrophic Filamentous Anoxygenic Phototrophic Bacterium, Chloroflexus sp. Strain MS-G (Chloroflexi).

Thiel V, Hamilton TL, Tomsho LP, Burhans R, Gay SE, Schuster SC, Ward DM, Bryant DA.

Genome Announc. 2014 Sep 4;2(5). pii: e00872-14. doi: 10.1128/genomeA.00872-14.

8.

Draft Genome Sequence of the Moderately Thermophilic Bacterium Schleiferia thermophila Strain Yellowstone (Bacteroidetes).

Thiel V, Hamilton TL, Tomsho LP, Burhans R, Gay SE, Ramaley RF, Schuster SC, Steinke L, Bryant DA.

Genome Announc. 2014 Aug 28;2(4). pii: e00860-14. doi: 10.1128/genomeA.00860-14.

9.

Design of the national health security preparedness index.

Uzun Jacobson E, Inglesby T, Khan AS, Rajotte JC, Burhans RL, Slemp CC, Links JM.

Biosecur Bioterror. 2014 May-Jun;12(3):122-31. doi: 10.1089/bsp.2014.0024.

PMID:
24896305
10.

Galaxy tools to study genome diversity.

Bedoya-Reina OC, Ratan A, Burhans R, Kim HL, Giardine B, Riemer C, Li Q, Olson TL, Loughran TP Jr, Vonholdt BM, Perry GH, Schuster SC, Miller W.

Gigascience. 2013 Dec 30;2(1):17. doi: 10.1186/2047-217X-2-17.

11.

Aye-aye population genomic analyses highlight an important center of endemism in northern Madagascar.

Perry GH, Louis EE Jr, Ratan A, Bedoya-Reina OC, Burhans RC, Lei R, Johnson SE, Schuster SC, Miller W.

Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):5823-8. doi: 10.1073/pnas.1211990110. Epub 2013 Mar 25.

12.

The importance of establishing a national health security preparedness index.

Lumpkin JR, Miller YK, Inglesby T, Links JM, Schwartz AT, Slemp CC, Burhans RL, Blumenstock J, Khan AS.

Biosecur Bioterror. 2013 Mar;11(1):81-7. doi: 10.1089/bsp.2013.0026. Epub 2013 Mar 18.

PMID:
23506403
13.

Some phenotype association tools in Galaxy: looking for disease SNPs in a full genome.

Giardine BM, Riemer C, Burhans R, Ratan A, Miller W.

Curr Protoc Bioinformatics. 2012 Sep;Chapter 15:Unit15.2. doi: 10.1002/0471250953.bi1502s39.

14.

Sequencing and analysis of a South Asian-Indian personal genome.

Gupta R, Ratan A, Rajesh C, Chen R, Kim HL, Burhans R, Miller W, Santhosh S, Davuluri RV, Butte AJ, Schuster SC, Seshagiri S, Thomas G.

BMC Genomics. 2012 Aug 31;13:440. doi: 10.1186/1471-2164-13-440.

15.

Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change.

Miller W, Schuster SC, Welch AJ, Ratan A, Bedoya-Reina OC, Zhao F, Kim HL, Burhans RC, Drautz DI, Wittekindt NE, Tomsho LP, Ibarra-Laclette E, Herrera-Estrella L, Peacock E, Farley S, Sage GK, Rode K, Obbard M, Montiel R, Bachmann L, Ingólfsson O, Aars J, Mailund T, Wiig O, Talbot SL, Lindqvist C.

Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):E2382-90. doi: 10.1073/pnas.1210506109. Epub 2012 Jul 23.

16.

Packaging and shipping capabilities of New York State hospital laboratories: a 3-year drill assessment.

Pennell PA, Brennan LE, Burhans RL, Ostrowski SE.

Clin Lab Sci. 2011 Winter;24(1):14-21.

PMID:
21404959
17.

Comparative and demographic analysis of orang-utan genomes.

Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, Fulton LA, Fulton RS, Nelson JO, Magrini V, Pohl C, Graves TA, Markovic C, Cree A, Dinh HH, Hume J, Kovar CL, Fowler GR, Lunter G, Meader S, Heger A, Ponting CP, Marques-Bonet T, Alkan C, Chen L, Cheng Z, Kidd JM, Eichler EE, White S, Searle S, Vilella AJ, Chen Y, Flicek P, Ma J, Raney B, Suh B, Burhans R, Herrero J, Haussler D, Faria R, Fernando O, Darré F, Farré D, Gazave E, Oliva M, Navarro A, Roberto R, Capozzi O, Archidiacono N, Della Valle G, Purgato S, Rocchi M, Konkel MK, Walker JA, Ullmer B, Batzer MA, Smit AF, Hubley R, Casola C, Schrider DR, Hahn MW, Quesada V, Puente XS, Ordoñez GR, López-Otín C, Vinar T, Brejova B, Ratan A, Harris RS, Miller W, Kosiol C, Lawson HA, Taliwal V, Martins AL, Siepel A, Roychoudhury A, Ma X, Degenhardt J, Bustamante CD, Gutenkunst RN, Mailund T, Dutheil JY, Hobolth A, Schierup MH, Ryder OA, Yoshinaga Y, de Jong PJ, Weinstock GM, Rogers J, Mardis ER, Gibbs RA, Wilson RK.

Nature. 2011 Jan 27;469(7331):529-33. doi: 10.1038/nature09687.

18.

MultiPipMaker: a comparative alignment server for multiple DNA sequences.

Elnitski L, Burhans R, Riemer C, Hardison R, Miller W.

Curr Protoc Bioinformatics. 2010 Jun;Chapter 10:Unit10.4. doi: 10.1002/0471250953.bi1004s30.

PMID:
20521245
19.

Complete Khoisan and Bantu genomes from southern Africa.

Schuster SC, Miller W, Ratan A, Tomsho LP, Giardine B, Kasson LR, Harris RS, Petersen DC, Zhao F, Qi J, Alkan C, Kidd JM, Sun Y, Drautz DI, Bouffard P, Muzny DM, Reid JG, Nazareth LV, Wang Q, Burhans R, Riemer C, Wittekindt NE, Moorjani P, Tindall EA, Danko CG, Teo WS, Buboltz AM, Zhang Z, Ma Q, Oosthuysen A, Steenkamp AW, Oostuisen H, Venter P, Gajewski J, Zhang Y, Pugh BF, Makova KD, Nekrutenko A, Mardis ER, Patterson N, Pringle TH, Chiaromonte F, Mullikin JC, Eichler EE, Hardison RC, Gibbs RA, Harkins TT, Hayes VM.

Nature. 2010 Feb 18;463(7283):943-7. doi: 10.1038/nature08795.

20.

Functional assessment of hospital laboratory packaging and shipping preparedness in New York State.

Pennell PA, Antenucci AJ, Brennan LE, Burhans RL, Ostrowski SE; NYS DOH Drill Development Team.

Clin Lab Sci. 2008 Fall;21(4):199-204.

PMID:
19174978
21.

MultiPipMaker: comparative alignment server for multiple DNA sequences.

Elnitski L, Riemer C, Burhans R, Hardison R, Miller W.

Curr Protoc Bioinformatics. 2005 Apr;Chapter 10:Unit10.4. doi: 10.1002/0471250953.bi1004s9.

PMID:
18428743
22.

28-way vertebrate alignment and conservation track in the UCSC Genome Browser.

Miller W, Rosenbloom K, Hardison RC, Hou M, Taylor J, Raney B, Burhans R, King DC, Baertsch R, Blankenberg D, Kosakovsky Pond SL, Nekrutenko A, Giardine B, Harris RS, Tyekucheva S, Diekhans M, Pringle TH, Murphy WJ, Lesk A, Weinstock GM, Lindblad-Toh K, Gibbs RA, Lander ES, Siepel A, Haussler D, Kent WJ.

Genome Res. 2007 Dec;17(12):1797-808. Epub 2007 Nov 5.

23.

An integrated information system for all-hazards health preparedness and response: New York State Health Emergency Response Data System.

Gotham IJ, Sottolano DL, Hennessy ME, Napoli JP, Dobkins G, Le LH, Burhans RL, Fage BI.

J Public Health Manag Pract. 2007 Sep-Oct;13(5):486-96.

PMID:
17762694
24.

Evolutionary and biomedical insights from the rhesus macaque genome.

Rhesus Macaque Genome Sequencing and Analysis Consortium, Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, Hardison RC, Makova KD, Miller W, Milosavljevic A, Palermo RE, Siepel A, Sikela JM, Attaway T, Bell S, Bernard KE, Buhay CJ, Chandrabose MN, Dao M, Davis C, Delehaunty KD, Ding Y, Dinh HH, Dugan-Rocha S, Fulton LA, Gabisi RA, Garner TT, Godfrey J, Hawes AC, Hernandez J, Hines S, Holder M, Hume J, Jhangiani SN, Joshi V, Khan ZM, Kirkness EF, Cree A, Fowler RG, Lee S, Lewis LR, Li Z, Liu YS, Moore SM, Muzny D, Nazareth LV, Ngo DN, Okwuonu GO, Pai G, Parker D, Paul HA, Pfannkoch C, Pohl CS, Rogers YH, Ruiz SJ, Sabo A, Santibanez J, Schneider BW, Smith SM, Sodergren E, Svatek AF, Utterback TR, Vattathil S, Warren W, White CS, Chinwalla AT, Feng Y, Halpern AL, Hillier LW, Huang X, Minx P, Nelson JO, Pepin KH, Qin X, Sutton GG, Venter E, Walenz BP, Wallis JW, Worley KC, Yang SP, Jones SM, Marra MA, Rocchi M, Schein JE, Baertsch R, Clarke L, Csürös M, Glasscock J, Harris RA, Havlak P, Jackson AR, Jiang H, Liu Y, Messina DN, Shen Y, Song HX, Wylie T, Zhang L, Birney E, Han K, Konkel MK, Lee J, Smit AF, Ullmer B, Wang H, Xing J, Burhans R, Cheng Z, Karro JE, Ma J, Raney B, She X, Cox MJ, Demuth JP, Dumas LJ, Han SG, Hopkins J, Karimpour-Fard A, Kim YH, Pollack JR, Vinar T, Addo-Quaye C, Degenhardt J, Denby A, Hubisz MJ, Indap A, Kosiol C, Lahn BT, Lawson HA, Marklein A, Nielsen R, Vallender EJ, Clark AG, Ferguson B, Hernandez RD, Hirani K, Kehrer-Sawatzki H, Kolb J, Patil S, Pu LL, Ren Y, Smith DG, Wheeler DA, Schenck I, Ball EV, Chen R, Cooper DN, Giardine B, Hsu F, Kent WJ, Lesk A, Nelson DL, O'brien WE, Prüfer K, Stenson PD, Wallace JC, Ke H, Liu XM, Wang P, Xiang AP, Yang F, Barber GP, Haussler D, Karolchik D, Kern AD, Kuhn RM, Smith KE, Zwieg AS.

Science. 2007 Apr 13;316(5822):222-34.

25.

Reconstructing contiguous regions of an ancestral genome.

Ma J, Zhang L, Suh BB, Raney BJ, Burhans RC, Kent WJ, Blanchette M, Haussler D, Miller W.

Genome Res. 2006 Dec;16(12):1557-65. Epub 2006 Sep 18.

26.

Galaxy: a platform for interactive large-scale genome analysis.

Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, Shah P, Zhang Y, Blankenberg D, Albert I, Taylor J, Miller W, Kent WJ, Nekrutenko A.

Genome Res. 2005 Oct;15(10):1451-5. Epub 2005 Sep 16.

27.

Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results.

Elnitski L, Giardine B, Shah P, Zhang Y, Riemer C, Weirauch M, Burhans R, Miller W, Hardison RC.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D466-70.

28.

Benign neoplasms of the extrahepatic biliary ducts.

Burhans R, Myers RT.

Am Surg. 1971 Mar;37(3):161-6. No abstract available.

PMID:
5548431
29.

Treatment of orchitis of mumps.

BURHANS RA.

J Urol. 1945 Dec;54:547. No abstract available.

PMID:
21008166

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