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Items: 1 to 50 of 111

1.

The telomere bouquet is a hub where meiotic double-strand breaks, synapsis, and stable homolog juxtaposition are coordinated in the zebrafish, Danio rerio.

Blokhina YP, Nguyen AD, Draper BW, Burgess SM.

PLoS Genet. 2019 Jan 17;15(1):e1007730. doi: 10.1371/journal.pgen.1007730. eCollection 2019 Jan.

2.

Microinjection in Zebrafish for Genome Editing and Functional Studies.

Pei W, Burgess SM.

Methods Mol Biol. 2019;1874:459-474. doi: 10.1007/978-1-4939-8831-0_26.

PMID:
30353530
3.

Rare Genetic Blood Disease Modeling in Zebrafish.

Rissone A, Burgess SM.

Front Genet. 2018 Aug 31;9:348. doi: 10.3389/fgene.2018.00348. eCollection 2018. Review.

4.

Multiplexed CRISPR/Cas9 Targeting of Genes Implicated in Retinal Regeneration and Degeneration.

Unal Eroglu A, Mulligan TS, Zhang L, White DT, Sengupta S, Nie C, Lu NY, Qian J, Xu L, Pei W, Burgess SM, Saxena MT, Mumm JS.

Front Cell Dev Biol. 2018 Aug 21;6:88. doi: 10.3389/fcell.2018.00088. eCollection 2018.

5.

Modeling Niemann-Pick disease type C1 in zebrafish: a robust platform for in vivo screening of candidate therapeutic compounds.

Tseng WC, Loeb HE, Pei W, Tsai-Morris CH, Xu L, Cluzeau CV, Wassif CA, Feldman B, Burgess SM, Pavan WJ, Porter FD.

Dis Model Mech. 2018 Aug 15;11(9). pii: dmm034165. doi: 10.1242/dmm.034165.

6.

Guided genetic screen to identify genes essential in the regeneration of hair cells and other tissues.

Pei W, Xu L, Huang SC, Pettie K, Idol J, Rissone A, Jimenez E, Sinclair JW, Slevin C, Varshney GK, Jones M, Carrington B, Bishop K, Huang H, Sood R, Lin S, Burgess SM.

NPJ Regen Med. 2018 Jun 4;3:11. doi: 10.1038/s41536-018-0050-7. eCollection 2018.

7.

Aberrant tRNA processing causes an autoinflammatory syndrome responsive to TNF inhibitors.

Giannelou A, Wang H, Zhou Q, Park YH, Abu-Asab MS, Ylaya K, Stone DL, Sediva A, Sleiman R, Sramkova L, Bhatla D, Serti E, Tsai WL, Yang D, Bishop K, Carrington B, Pei W, Deuitch N, Brooks S, Edwan JH, Joshi S, Prader S, Kaiser D, Owen WC, Sonbul AA, Zhang Y, Niemela JE, Burgess SM, Boehm M, Rehermann B, Chae J, Quezado MM, Ombrello AK, Buckley RH, Grom AA, Remmers EF, Pachlopnik JM, Su HC, Gutierrez-Cruz G, Hewitt SM, Sood R, Risma K, Calvo KR, Rosenzweig SD, Gadina M, Hafner M, Sun HW, Kastner DL, Aksentijevich I.

Ann Rheum Dis. 2018 Apr;77(4):612-619. doi: 10.1136/annrheumdis-2017-212401. Epub 2018 Jan 22.

8.

The Nucleoporin Nup2 Contains a Meiotic-Autonomous Region that Promotes the Dynamic Chromosome Events of Meiosis.

Chu DB, Gromova T, Newman TAC, Burgess SM.

Genetics. 2017 Jul;206(3):1319-1337. doi: 10.1534/genetics.116.194555. Epub 2017 Apr 28.

9.

Novel degenerative and developmental defects in a zebrafish model of mucolipidosis type IV.

Li H, Pei W, Vergarajauregui S, Zerfas PM, Raben N, Burgess SM, Puertollano R.

Hum Mol Genet. 2017 Jul 15;26(14):2701-2718. doi: 10.1093/hmg/ddx158.

10.

Highly Efficient Cpf1-Mediated Gene Targeting in Mice Following High Concentration Pronuclear Injection.

Watkins-Chow DE, Varshney GK, Garrett LJ, Chen Z, Jimenez EA, Rivas C, Bishop KS, Sood R, Harper UL, Pavan WJ, Burgess SM.

G3 (Bethesda). 2017 Feb 9;7(2):719-722. doi: 10.1534/g3.116.038091.

11.

A high-throughput functional genomics workflow based on CRISPR/Cas9-mediated targeted mutagenesis in zebrafish.

Varshney GK, Carrington B, Pei W, Bishop K, Chen Z, Fan C, Xu L, Jones M, LaFave MC, Ledin J, Sood R, Burgess SM.

Nat Protoc. 2016 Dec;11(12):2357-2375. doi: 10.1038/nprot.2016.141. Epub 2016 Oct 27.

12.

Advancing toxicology research using in vivo high throughput toxicology with small fish models.

Planchart A, Mattingly CJ, Allen D, Ceger P, Casey W, Hinton D, Kanungo J, Kullman SW, Tal T, Bondesson M, Burgess SM, Sullivan C, Kim C, Behl M, Padilla S, Reif DM, Tanguay RL, Hamm J.

ALTEX. 2016;33(4):435-452. doi: 10.14573/altex.1601281. Epub 2016 Jun 21.

13.

Loss of Mgat5a-mediated N-glycosylation stimulates regeneration in zebrafish.

Pei W, Huang SC, Xu L, Pettie K, Ceci ML, Sánchez M, Allende ML, Burgess SM.

Cell Regen (Lond). 2016 Oct 20;5:3. eCollection 2016.

14.

DNA-guided genome editing using structure-guided endonucleases.

Varshney GK, Burgess SM.

Genome Biol. 2016 Sep 15;17(1):187. doi: 10.1186/s13059-016-1055-4. Review.

15.

Additive reductions in zebrafish PRPS1 activity result in a spectrum of deficiencies modeling several human PRPS1-associated diseases.

Pei W, Xu L, Varshney GK, Carrington B, Bishop K, Jones M, Huang SC, Idol J, Pretorius PR, Beirl A, Schimmenti LA, Kindt KS, Sood R, Burgess SM.

Sci Rep. 2016 Jul 18;6:29946. doi: 10.1038/srep29946.

16.

Genotoxicity in Mice Following AAV Gene Delivery: A Safety Concern for Human Gene Therapy?

Chandler RJ, LaFave MC, Varshney GK, Burgess SM, Venditti CP.

Mol Ther. 2016 Feb;24(2):198-201. doi: 10.1038/mt.2016.17. No abstract available.

17.

Genome-Wide Analysis of Transposon and Retroviral Insertions Reveals Preferential Integrations in Regions of DNA Flexibility.

Vrljicak P, Tao S, Varshney GK, Quach HN, Joshi A, LaFave MC, Burgess SM, Sampath K.

G3 (Bethesda). 2016 Apr 7;6(4):805-17. doi: 10.1534/g3.115.026849.

18.

A Computational Approach to Estimating Nondisjunction Frequency in Saccharomyces cerevisiae.

Chu DB, Burgess SM.

G3 (Bethesda). 2016 Jan 8;6(3):669-82. doi: 10.1534/g3.115.024380.

19.

Extracellular HSP60 triggers tissue regeneration and wound healing by regulating inflammation and cell proliferation.

Pei W, Tanaka K, Huang SC, Xu L, Liu B, Sinclair J, Idol J, Varshney GK, Huang H, Lin S, Nussenblatt RB, Mori R, Burgess SM.

NPJ Regen Med. 2016;1. pii: 16013. doi: 10.1038/npjregenmed.2016.13. Epub 2016 Oct 27.

20.

Development and Validation of the Eyelash Satisfaction Questionnaire.

Dang J, Cole JC, Burgess SM, Yang M, Daniels SR, Walt JG.

Aesthet Surg J. 2016 Feb;36(2):221-8. doi: 10.1093/asj/sjv154. Epub 2015 Dec 20.

21.

Understanding and Editing the Zebrafish Genome.

Varshney GK, Sood R, Burgess SM.

Adv Genet. 2015;92:1-52. doi: 10.1016/bs.adgen.2015.09.002. Epub 2015 Nov 12. Review.

PMID:
26639914
22.

A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies.

Marquart GD, Tabor KM, Brown M, Strykowski JL, Varshney GK, LaFave MC, Mueller T, Burgess SM, Higashijima S, Burgess HA.

Front Neural Circuits. 2015 Nov 24;9:78. doi: 10.3389/fncir.2015.00078. eCollection 2015.

23.

Comparison of Patient-Reported Outcomes Requirements in Medical Guidelines for Pain, Migraine, Rheumatoid Arthritis, and Systemic Lupus Erythematosus: Europe Vs. United States.

Burgess SM, Gauthier M, Cala ML.

Value Health. 2015 Nov;18(7):A743. doi: 10.1016/j.jval.2015.09.2859. Epub 2015 Oct 20. No abstract available.

24.

Development and Validation of A Patient-Reported Outcome Measure of the Psychological Impact of Submental Fat.

Gross TM, Burgess SM, Somogyi C, Lizzul PF, Beddingfield FC.

Value Health. 2015 Nov;18(7):A412. doi: 10.1016/j.jval.2015.09.989. Epub 2015 Oct 20. No abstract available.

25.

CRISPRz: a database of zebrafish validated sgRNAs.

Varshney GK, Zhang S, Pei W, Adomako-Ankomah A, Fohtung J, Schaffer K, Carrington B, Maskeri A, Slevin C, Wolfsberg T, Ledin J, Sood R, Burgess SM.

Nucleic Acids Res. 2016 Jan 4;44(D1):D822-6. doi: 10.1093/nar/gkv998. Epub 2015 Oct 4.

26.

CRISPR-STAT: an easy and reliable PCR-based method to evaluate target-specific sgRNA activity.

Carrington B, Varshney GK, Burgess SM, Sood R.

Nucleic Acids Res. 2015 Dec 15;43(22):e157. doi: 10.1093/nar/gkv802. Epub 2015 Aug 7.

27.

Mutagenesis Screen Identifies agtpbp1 and eps15L1 as Essential for T lymphocyte Development in Zebrafish.

Seiler C, Gebhart N, Zhang Y, Shinton SA, Li YS, Ross NL, Liu X, Li Q, Bilbee AN, Varshney GK, LaFave MC, Burgess SM, Balciuniene J, Balciunas D, Hardy RR, Kappes DJ, Wiest DL, Rhodes J.

PLoS One. 2015 Jul 10;10(7):e0131908. doi: 10.1371/journal.pone.0131908. eCollection 2015.

28.

GeIST: a pipeline for mapping integrated DNA elements.

LaFave MC, Varshney GK, Burgess SM.

Bioinformatics. 2015 Oct 1;31(19):3219-21. doi: 10.1093/bioinformatics/btv350. Epub 2015 Jun 6.

29.

High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9.

Varshney GK, Pei W, LaFave MC, Idol J, Xu L, Gallardo V, Carrington B, Bishop K, Jones M, Li M, Harper U, Huang SC, Prakash A, Chen W, Sood R, Ledin J, Burgess SM.

Genome Res. 2015 Jul;25(7):1030-42. doi: 10.1101/gr.186379.114. Epub 2015 Jun 5.

30.

Multiplex Conditional Mutagenesis Using Transgenic Expression of Cas9 and sgRNAs.

Yin L, Maddison LA, Li M, Kara N, LaFave MC, Varshney GK, Burgess SM, Patton JG, Chen W.

Genetics. 2015 Jun;200(2):431-41. doi: 10.1534/genetics.115.176917. Epub 2015 Apr 8.

31.

A Multifunctional Mutagenesis System for Analysis of Gene Function in Zebrafish.

Quach HN, Tao S, Vrljicak P, Joshi A, Ruan H, Sukumaran R, Varshney GK, LaFave MC; Ds Screen Team, Burgess SM, Winkler C, Emelyanov A, Parinov S, Sampath K.

G3 (Bethesda). 2015 Apr 2;5(6):1283-99. doi: 10.1534/g3.114.015842.

32.

Phenotype-driven chemical screening in zebrafish for compounds that inhibit collective cell migration identifies multiple pathways potentially involved in metastatic invasion.

Gallardo VE, Varshney GK, Lee M, Bupp S, Xu L, Shinn P, Crawford NP, Inglese J, Burgess SM.

Dis Model Mech. 2015 Jun;8(6):565-76. doi: 10.1242/dmm.018689. Epub 2015 Mar 25.

33.

Vector design influences hepatic genotoxicity after adeno-associated virus gene therapy.

Chandler RJ, LaFave MC, Varshney GK, Trivedi NS, Carrillo-Carrasco N, Senac JS, Wu W, Hoffmann V, Elkahloun AG, Burgess SM, Venditti CP.

J Clin Invest. 2015 Feb;125(2):870-80. doi: 10.1172/JCI79213. Epub 2015 Jan 20.

34.

Long-term correction of Sandhoff disease following intravenous delivery of rAAV9 to mouse neonates.

Walia JS, Altaleb N, Bello A, Kruck C, LaFave MC, Varshney GK, Burgess SM, Chowdhury B, Hurlbut D, Hemming R, Kobinger GP, Triggs-Raine B.

Mol Ther. 2015 Mar;23(3):414-22. doi: 10.1038/mt.2014.240. Epub 2014 Dec 17.

35.

The impact of upper facial lines and psychological impact of crow's feet lines: content validation of the Facial Line Outcomes (FLO-11) Questionnaire.

Yaworsky A, Daniels S, Tully S, Beddingfield F 3rd, Kowalski J, Fitzgerald K, Somogyi C, Burgess SM.

J Cosmet Dermatol. 2014 Dec;13(4):297-306. doi: 10.1111/jocd.12117.

PMID:
25399622
36.

trieFinder: an efficient program for annotating Digital Gene Expression (DGE) tags.

Renaud G, LaFave MC, Liang J, Wolfsberg TG, Burgess SM.

BMC Bioinformatics. 2014 Oct 13;15:329. doi: 10.1186/1471-2105-15-329.

37.

A defined zebrafish line for high-throughput genetics and genomics: NHGRI-1.

LaFave MC, Varshney GK, Vemulapalli M, Mullikin JC, Burgess SM.

Genetics. 2014 Sep;198(1):167-70. doi: 10.1534/genetics.114.166769. Epub 2014 Jul 9.

38.

Development of a new patient-reported outcome measure for facial acne: the Acne Symptom and Impact Scale (ASIS).

Alexis A, Daniels SR, Johnson N, Pompilus F, Burgess SM, Harper JC.

J Drugs Dermatol. 2014 Mar;13(3):333-40. Review.

PMID:
24595580
39.

Early-onset stroke and vasculopathy associated with mutations in ADA2.

Zhou Q, Yang D, Ombrello AK, Zavialov AV, Toro C, Zavialov AV, Stone DL, Chae JJ, Rosenzweig SD, Bishop K, Barron KS, Kuehn HS, Hoffmann P, Negro A, Tsai WL, Cowen EW, Pei W, Milner JD, Silvin C, Heller T, Chin DT, Patronas NJ, Barber JS, Lee CC, Wood GM, Ling A, Kelly SJ, Kleiner DE, Mullikin JC, Ganson NJ, Kong HH, Hambleton S, Candotti F, Quezado MM, Calvo KR, Alao H, Barham BK, Jones A, Meschia JF, Worrall BB, Kasner SE, Rich SS, Goldbach-Mansky R, Abinun M, Chalom E, Gotte AC, Punaro M, Pascual V, Verbsky JW, Torgerson TR, Singer NG, Gershon TR, Ozen S, Karadag O, Fleisher TA, Remmers EF, Burgess SM, Moir SL, Gadina M, Sood R, Hershfield MS, Boehm M, Kastner DL, Aksentijevich I.

N Engl J Med. 2014 Mar 6;370(10):911-20. doi: 10.1056/NEJMoa1307361. Epub 2014 Feb 19.

40.

MLV integration site selection is driven by strong enhancers and active promoters.

LaFave MC, Varshney GK, Gildea DE, Wolfsberg TG, Baxevanis AD, Burgess SM.

Nucleic Acids Res. 2014 Apr;42(7):4257-69. doi: 10.1093/nar/gkt1399. Epub 2014 Jan 23.

41.

Mutagenesis and phenotyping resources in zebrafish for studying development and human disease.

Varshney GK, Burgess SM.

Brief Funct Genomics. 2014 Mar;13(2):82-94. doi: 10.1093/bfgp/elt042. Epub 2013 Oct 26. Review.

42.

CaMK-II activation is essential for zebrafish inner ear development and acts through Delta-Notch signaling.

Rothschild SC, Lahvic J, Francescatto L, McLeod JJ, Burgess SM, Tombes RM.

Dev Biol. 2013 Sep 1;381(1):179-88. doi: 10.1016/j.ydbio.2013.05.028. Epub 2013 Jun 7.

43.

A large-scale zebrafish gene knockout resource for the genome-wide study of gene function.

Varshney GK, Lu J, Gildea DE, Huang H, Pei W, Yang Z, Huang SC, Schoenfeld D, Pho NH, Casero D, Hirase T, Mosbrook-Davis D, Zhang S, Jao LE, Zhang B, Woods IG, Zimmerman S, Schier AF, Wolfsberg TG, Pellegrini M, Burgess SM, Lin S.

Genome Res. 2013 Apr;23(4):727-35. doi: 10.1101/gr.151464.112. Epub 2013 Feb 4.

44.

Multiple opposing constraints govern chromosome interactions during meiosis.

Lui DY, Cahoon CK, Burgess SM.

PLoS Genet. 2013;9(1):e1003197. doi: 10.1371/journal.pgen.1003197. Epub 2013 Jan 17.

45.

The Zebrafish Insertion Collection (ZInC): a web based, searchable collection of zebrafish mutations generated by DNA insertion.

Varshney GK, Huang H, Zhang S, Lu J, Gildea DE, Yang Z, Wolfsberg TG, Lin S, Burgess SM.

Nucleic Acids Res. 2013 Jan;41(Database issue):D861-4. doi: 10.1093/nar/gks946. Epub 2012 Nov 24.

46.

The changing conditions of zebrafish mutants.

Burgess SM.

Proc Natl Acad Sci U S A. 2012 Sep 18;109(38):15082-3. Epub 2012 Sep 4. No abstract available.

47.

The stat3/socs3a pathway is a key regulator of hair cell regeneration in zebrafish. [corrected].

Liang J, Wang D, Renaud G, Wolfsberg TG, Wilson AF, Burgess SM.

J Neurosci. 2012 Aug 1;32(31):10662-73. doi: 10.1523/JNEUROSCI.5785-10.2012. Erratum in: J Neurosci. 2012 Oct 3;32(40):14052.

48.

Disruption of the folate pathway in zebrafish causes developmental defects.

Lee MS, Bonner JR, Bernard DJ, Sanchez EL, Sause ET, Prentice RR, Burgess SM, Brody LC.

BMC Dev Biol. 2012 Apr 5;12:12. doi: 10.1186/1471-213X-12-12.

49.

Incorporating indirect costs into a cost-benefit analysis of laparoscopic adjustable gastric banding.

Finkelstein EA, Allaire BT, Dibonaventura MD, Burgess SM.

Value Health. 2012 Mar-Apr;15(2):299-304. doi: 10.1016/j.jval.2011.12.004. Epub 2012 Feb 2.

50.

Transcriptional signature of accessory cells in the lateral line, using the Tnk1bp1:EGFP transgenic zebrafish line.

Behra M, Gallardo VE, Bradsher J, Torrado A, Elkahloun A, Idol J, Sheehy J, Zonies S, Xu L, Shaw KM, Satou C, Higashijima S, Weinstein BM, Burgess SM.

BMC Dev Biol. 2012 Jan 24;12:6. doi: 10.1186/1471-213X-12-6.

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