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Items: 1 to 50 of 333

1.

An updated phylogeny of the Alphaproteobacteria reveals that the parasitic Rickettsiales and Holosporales have independent origins.

Muñoz-Gómez SA, Hess S, Burger G, Lang BF, Susko E, Slamovits CH, Roger AJ.

Elife. 2019 Feb 25;8. pii: e42535. doi: 10.7554/eLife.42535.

2.

Perfection of eccentricity: Mitochondrial genomes of diplonemids.

Burger G, Valach M.

IUBMB Life. 2018 Dec;70(12):1197-1206. doi: 10.1002/iub.1927. Epub 2018 Oct 10. Review.

PMID:
30304578
3.

Respiratory chain Complex I of unparalleled divergence in diplonemids.

Valach M, Léveillé-Kunst A, Gray MW, Burger G.

J Biol Chem. 2018 Oct 12;293(41):16043-16056. doi: 10.1074/jbc.RA118.005326. Epub 2018 Aug 30.

PMID:
30166340
4.

Suitability of Inexpensive Eye-Tracking Device for User Experience Evaluations.

Burger G, Guna J, Pogačnik M.

Sensors (Basel). 2018 Jun 5;18(6). pii: E1822. doi: 10.3390/s18061822.

5.

Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase.

Záhonová K, Petrželková R, Valach M, Yazaki E, Tikhonenkov DV, Butenko A, Janouškovec J, Hrdá Š, Klimeš V, Burger G, Inagaki Y, Keeling PJ, Hampl V, Flegontov P, Yurchenko V, Eliáš M.

Sci Rep. 2018 Mar 27;8(1):5239. doi: 10.1038/s41598-018-23575-0.

6.

Transformation of Diplonema papillatum, the type species of the highly diverse and abundant marine microeukaryotes Diplonemida (Euglenozoa).

Kaur B, Valach M, Peña-Diaz P, Moreira S, Keeling PJ, Burger G, Lukeš J, Faktorová D.

Environ Microbiol. 2018 Mar;20(3):1030-1040. doi: 10.1111/1462-2920.14041. Epub 2018 Feb 2.

PMID:
29318727
7.

Keeping it complicated: Mitochondrial genome plasticity across diplonemids.

Valach M, Moreira S, Hoffmann S, Stadler PF, Burger G.

Sci Rep. 2017 Oct 26;7(1):14166. doi: 10.1038/s41598-017-14286-z.

8.

Deciphering Epithelial-Mesenchymal Transition Regulatory Networks in Cancer through Computational Approaches.

Burger GA, Danen EHJ, Beltman JB.

Front Oncol. 2017 Aug 3;7:162. doi: 10.3389/fonc.2017.00162. eCollection 2017. Review.

9.

Post-transcriptional mending of gene sequences: Looking under the hood of mitochondrial gene expression in diplonemids.

Valach M, Moreira S, Faktorová D, Lukeš J, Burger G.

RNA Biol. 2016 Dec;13(12):1204-1211. Epub 2016 Oct 7. Review.

10.

Genes in Hiding.

Burger G, Moreira S, Valach M.

Trends Genet. 2016 Sep;32(9):553-565. doi: 10.1016/j.tig.2016.06.005. Epub 2016 Jul 22. Review.

PMID:
27460648
11.

Natural language processing in pathology: a scoping review.

Burger G, Abu-Hanna A, de Keizer N, Cornet R.

J Clin Pathol. 2016 Jul 22. pii: jclinpath-2016-203872. doi: 10.1136/jclinpath-2016-203872. [Epub ahead of print] Review.

PMID:
27451435
12.

Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication.

Corrochano LM, Kuo A, Marcet-Houben M, Polaino S, Salamov A, Villalobos-Escobedo JM, Grimwood J, Álvarez MI, Avalos J, Bauer D, Benito EP, Benoit I, Burger G, Camino LP, Cánovas D, Cerdá-Olmedo E, Cheng JF, Domínguez A, Eliáš M, Eslava AP, Glaser F, Gutiérrez G, Heitman J, Henrissat B, Iturriaga EA, Lang BF, Lavín JL, Lee SC, Li W, Lindquist E, López-García S, Luque EM, Marcos AT, Martin J, McCluskey K, Medina HR, Miralles-Durán A, Miyazaki A, Muñoz-Torres E, Oguiza JA, Ohm RA, Olmedo M, Orejas M, Ortiz-Castellanos L, Pisabarro AG, Rodríguez-Romero J, Ruiz-Herrera J, Ruiz-Vázquez R, Sanz C, Schackwitz W, Shahriari M, Shelest E, Silva-Franco F, Soanes D, Syed K, Tagua VG, Talbot NJ, Thon MR, Tice H, de Vries RP, Wiebenga A, Yadav JS, Braun EL, Baker SE, Garre V, Schmutz J, Horwitz BA, Torres-Martínez S, Idnurm A, Herrera-Estrella A, Gabaldón T, Grigoriev IV.

Curr Biol. 2016 Jun 20;26(12):1577-1584. doi: 10.1016/j.cub.2016.04.038. Epub 2016 May 26.

13.

Non-functional genes repaired at the RNA level.

Burger G.

C R Biol. 2016 Jul-Aug;339(7-8):289-95. doi: 10.1016/j.crvi.2016.04.004. Epub 2016 May 11. Review.

PMID:
27180109
14.

Improved quality of patient care through routine second review of histopathology specimens prior to multidisciplinary meetings.

Kuijpers CC, Burger G, Al-Janabi S, Willems SM, van Diest PJ, Jiwa M.

J Clin Pathol. 2016 Oct;69(10):866-71. doi: 10.1136/jclinpath-2015-203488. Epub 2016 Mar 30.

PMID:
27030307
15.

Novel modes of RNA editing in mitochondria.

Moreira S, Valach M, Aoulad-Aissa M, Otto C, Burger G.

Nucleic Acids Res. 2016 Jun 2;44(10):4907-19. doi: 10.1093/nar/gkw188. Epub 2016 Mar 21.

16.

Enactment of mandatory pharmacy technician certification in Kansas.

Lucas A, Massey L, Gill T, Burger G, Little JD.

Am J Health Syst Pharm. 2016 Feb 1;73(3):133-6. doi: 10.2146/ajhp150308.

PMID:
26796906
17.

Building a business case for an outpatient pharmacy.

Burger GS, Jorgenson JA, Stevenson JG.

Healthc Financ Manage. 2015 Jun;69(6):76-81.

PMID:
26665338
18.

Three-dimensional structure model and predicted ATP interaction rewiring of a deviant RNA ligase 2.

Moreira S, Noutahi E, Lamoureux G, Burger G.

BMC Struct Biol. 2015 Oct 9;15:20. doi: 10.1186/s12900-015-0046-0.

19.

Programmed translational bypassing elements in mitochondria: structure, mobility, and evolutionary origin.

Nosek J, Tomaska L, Burger G, Lang BF.

Trends Genet. 2015 Apr;31(4):187-94. doi: 10.1016/j.tig.2015.02.010. Epub 2015 Mar 17. Review.

PMID:
25795412
20.

Widespread occurrence of organelle genome-encoded 5S rRNAs including permuted molecules.

Valach M, Burger G, Gray MW, Lang BF.

Nucleic Acids Res. 2014 Dec 16;42(22):13764-77. doi: 10.1093/nar/gku1266. Epub 2014 Nov 27.

21.

Massive programmed translational jumping in mitochondria.

Lang BF, Jakubkova M, Hegedusova E, Daoud R, Forget L, Brejova B, Vinar T, Kosa P, Fricova D, Nebohacova M, Griac P, Tomaska L, Burger G, Nosek J.

Proc Natl Acad Sci U S A. 2014 Apr 22;111(16):5926-31. doi: 10.1073/pnas.1322190111. Epub 2014 Apr 7.

22.

Earliest Holozoan expansion of phosphotyrosine signaling.

Suga H, Torruella G, Burger G, Brown MW, Ruiz-Trillo I.

Mol Biol Evol. 2014 Mar;31(3):517-28. doi: 10.1093/molbev/mst241. Epub 2013 Dec 3.

23.

Trans-splicing and RNA editing of LSU rRNA in Diplonema mitochondria.

Valach M, Moreira S, Kiethega GN, Burger G.

Nucleic Acids Res. 2014 Feb;42(4):2660-72. doi: 10.1093/nar/gkt1152. Epub 2013 Nov 19.

24.

Investigation of the impacts of thermal pretreatment on waste activated sludge and development of a pretreatment model.

Burger G, Parker W.

Water Res. 2013 Sep 15;47(14):5245-56. doi: 10.1016/j.watres.2013.06.005. Epub 2013 Jun 15.

PMID:
23850212
25.

A second eukaryotic group with mitochondrion-encoded tmRNA: in silico identification and experimental confirmation.

Hafez M, Burger G, Steinberg SV, Lang BF.

RNA Biol. 2013 Jul;10(7):1117-24. doi: 10.4161/rna.25376. Epub 2013 Jun 17.

26.

Strikingly bacteria-like and gene-rich mitochondrial genomes throughout jakobid protists.

Burger G, Gray MW, Forget L, Lang BF.

Genome Biol Evol. 2013;5(2):418-38. doi: 10.1093/gbe/evt008.

27.

RNA-level unscrambling of fragmented genes in Diplonema mitochondria.

Kiethega GN, Yan Y, Turcotte M, Burger G.

RNA Biol. 2013 Feb;10(2):301-13. doi: 10.4161/rna.23340. Epub 2013 Jan 16.

28.

The management of dental anxiety and impact of psychosomatic factors on dentistry: is recent scientific research translated into German dental practices?

Diercke K, Bürger GD, Bermejo JL, Lux CJ, Brunner M.

J Health Psychol. 2013 Dec;18(12):1519-28. doi: 10.1177/1359105312465910. Epub 2012 Dec 6.

PMID:
23221489
29.

Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants.

Price DC, Chan CX, Yoon HS, Yang EC, Qiu H, Weber AP, Schwacke R, Gross J, Blouin NA, Lane C, Reyes-Prieto A, Durnford DG, Neilson JA, Lang BF, Burger G, Steiner JM, Löffelhardt W, Meuser JE, Posewitz MC, Ball S, Arias MC, Henrissat B, Coutinho PM, Rensing SA, Symeonidi A, Doddapaneni H, Green BR, Rajah VD, Boore J, Bhattacharya D.

Science. 2012 Feb 17;335(6070):843-7. doi: 10.1126/science.1213561. Erratum in: Science. 2012 Mar 16;335(6074):1302.

30.

Unscrambling genetic information at the RNA level.

Moreira S, Breton S, Burger G.

Wiley Interdiscip Rev RNA. 2012 Mar-Apr;3(2):213-28. doi: 10.1002/wrna.1106. Epub 2012 Jan 24. Review.

PMID:
22275292
31.

Gene fragmentation: a key to mitochondrial genome evolution in Euglenozoa?

Flegontov P, Gray MW, Burger G, Lukeš J.

Curr Genet. 2011 Aug;57(4):225-32. doi: 10.1007/s00294-011-0340-8. Epub 2011 May 5. Review.

PMID:
21544620
32.

Evolutionarily conserved cox1 trans-splicing without cis-motifs.

Kiethega GN, Turcotte M, Burger G.

Mol Biol Evol. 2011 Sep;28(9):2425-8. doi: 10.1093/molbev/msr075. Epub 2011 Mar 23.

PMID:
21436119
33.

TESTLoc: protein subcellular localization prediction from EST data.

Shen YQ, Burger G.

BMC Bioinformatics. 2010 Nov 15;11:563. doi: 10.1186/1471-2105-11-563.

34.

Systematically fragmented genes in a multipartite mitochondrial genome.

Vlcek C, Marande W, Teijeiro S, Lukes J, Burger G.

Nucleic Acids Res. 2011 Feb;39(3):979-88. doi: 10.1093/nar/gkq883. Epub 2010 Oct 8.

35.

Abundant 5S rRNA-like transcripts encoded by the mitochondrial genome in amoebozoa.

Bullerwell CE, Burger G, Gott JM, Kourennaia O, Schnare MN, Gray MW.

Eukaryot Cell. 2010 May;9(5):762-73. doi: 10.1128/EC.00013-10. Epub 2010 Mar 19.

36.

Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles.

Baurain D, Brinkmann H, Petersen J, Rodríguez-Ezpeleta N, Stechmann A, Demoulin V, Roger AJ, Burger G, Lang BF, Philippe H.

Mol Biol Evol. 2010 Jul;27(7):1698-709. doi: 10.1093/molbev/msq059. Epub 2010 Mar 1.

PMID:
20194427
37.

Parallel computing in conceptual sewer simulations.

Burger G, Fach S, Kinzel H, Rauch W.

Water Sci Technol. 2010;61(2):283-91. doi: 10.2166/wst.2010.798.

PMID:
20107253
38.

Attitudes towards people with physical or intellectual disabilities: nursing students and non-nursing peers.

ten Klooster PM, Dannenberg JW, Taal E, Burger G, Rasker JJ.

J Adv Nurs. 2009 Dec;65(12):2562-73. doi: 10.1111/j.1365-2648.2009.05146.x.

PMID:
19941543
39.

Group I-intron trans-splicing and mRNA editing in the mitochondria of placozoan animals.

Burger G, Yan Y, Javadi P, Lang BF.

Trends Genet. 2009 Sep;25(9):381-6. doi: 10.1016/j.tig.2009.07.003. Epub 2009 Aug 27.

PMID:
19716620
40.

Diversity and dispersal of a ubiquitous protein family: acyl-CoA dehydrogenases.

Shen YQ, Lang BF, Burger G.

Nucleic Acids Res. 2009 Sep;37(17):5619-31. doi: 10.1093/nar/gkp566. Epub 2009 Jul 22.

41.

Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication.

Ma LJ, Ibrahim AS, Skory C, Grabherr MG, Burger G, Butler M, Elias M, Idnurm A, Lang BF, Sone T, Abe A, Calvo SE, Corrochano LM, Engels R, Fu J, Hansberg W, Kim JM, Kodira CD, Koehrsen MJ, Liu B, Miranda-Saavedra D, O'Leary S, Ortiz-Castellanos L, Poulter R, Rodriguez-Romero J, Ruiz-Herrera J, Shen YQ, Zeng Q, Galagan J, Birren BW, Cuomo CA, Wickes BL.

PLoS Genet. 2009 Jul;5(7):e1000549. doi: 10.1371/journal.pgen.1000549. Epub 2009 Jul 3.

42.

Distribution and phylogeny of EFL and EF-1alpha in Euglenozoa suggest ancestral co-occurrence followed by differential loss.

Gile GH, Faktorová D, Castlejohn CA, Burger G, Lang BF, Farmer MA, Lukes J, Keeling PJ.

PLoS One. 2009;4(4):e5162. doi: 10.1371/journal.pone.0005162. Epub 2009 Apr 9.

43.

EST databases and web tools for EST projects.

Shen YQ, O'Brien E, Koski L, Lang BF, Burger G.

Methods Mol Biol. 2009;533:241-56. doi: 10.1007/978-1-60327-136-3_11.

PMID:
19277569
44.

Construction of cDNA libraries: focus on protists and fungi.

Rodríguez-Ezpeleta N, Teijeiro S, Forget L, Burger G, Lang BF.

Methods Mol Biol. 2009;533:33-47. doi: 10.1007/978-1-60327-136-3_3.

PMID:
19277563
45.

Function prediction of hypothetical proteins without sequence similarity to proteins of known function.

Kannan S, Hauth AM, Burger G.

Protein Pept Lett. 2008;15(10):1107-16.

PMID:
19075823
46.

GOBASE: an organelle genome database.

O'Brien EA, Zhang Y, Wang E, Marie V, Badejoko W, Lang BF, Burger G.

Nucleic Acids Res. 2009 Jan;37(Database issue):D946-50. doi: 10.1093/nar/gkn819. Epub 2008 Oct 25.

47.

Unassigned MURF1 of kinetoplastids codes for NADH dehydrogenase subunit 2.

Kannan S, Burger G.

BMC Genomics. 2008 Oct 2;9:455. doi: 10.1186/1471-2164-9-455.

48.

Plasticity of a key metabolic pathway in fungi.

Shen YQ, Burger G.

Funct Integr Genomics. 2009 May;9(2):145-51. doi: 10.1007/s10142-008-0095-6. Epub 2008 Sep 16. Review.

PMID:
18795352
49.

[When genes break up: the mitochondrial genomes of diplonemids].

Burger G, Roy J, Teijeiro S.

Med Sci (Paris). 2008 Aug-Sep;24(8-9):703-5. doi: 10.1051/medsci/20082489703. French. No abstract available.

50.

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