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Items: 30

1.

DAFi: A directed recursive data filtering and clustering approach for improving and interpreting data clustering identification of cell populations from polychromatic flow cytometry data.

Lee AJ, Chang I, Burel JG, Lindestam Arlehamn CS, Mandava A, Weiskopf D, Peters B, Sette A, Scheuermann RH, Qian Y.

Cytometry A. 2018 Jun;93(6):597-610. doi: 10.1002/cyto.a.23371. Epub 2018 Apr 17.

PMID:
29665244
2.

Discovering transcriptional signatures of disease for diagnosis versus mechanism.

Burel JG, Peters B.

Nat Rev Immunol. 2018 May;18(5):289-290. doi: 10.1038/nri.2018.26. Epub 2018 Apr 9. No abstract available.

PMID:
29629714
3.

Transcriptomic Analysis of CD4+ T Cells Reveals Novel Immune Signatures of Latent Tuberculosis.

Burel JG, Lindestam Arlehamn CS, Khan N, Seumois G, Greenbaum JA, Taplitz R, Gilman RH, Saito M, Vijayanand P, Sette A, Peters B.

J Immunol. 2018 May 1;200(9):3283-3290. doi: 10.4049/jimmunol.1800118. Epub 2018 Mar 30.

PMID:
29602771
4.

Unique phenotypes and clonal expansions of human CD4 effector memory T cells re-expressing CD45RA.

Tian Y, Babor M, Lane J, Schulten V, Patil VS, Seumois G, Rosales SL, Fu Z, Picarda G, Burel J, Zapardiel-Gonzalo J, Tennekoon RN, De Silva AD, Premawansa S, Premawansa G, Wijewickrama A, Greenbaum JA, Vijayanand P, Weiskopf D, Sette A, Peters B.

Nat Commun. 2017 Nov 13;8(1):1473. doi: 10.1038/s41467-017-01728-5.

5.

Dichotomous miR expression and immune responses following primary blood-stage malaria.

Burel JG, Apte SH, Groves PL, Boyle MJ, Langer C, Beeson JG, McCarthy JS, Doolan DL.

JCI Insight. 2017 Aug 3;2(15). pii: 93434. doi: 10.1172/jci.insight.93434. [Epub ahead of print]

6.

Early Immune Regulatory Changes in a Primary Controlled Human Plasmodium vivax Infection: CD1c+ Myeloid Dendritic Cell Maturation Arrest, Induction of the Kynurenine Pathway, and Regulatory T Cell Activation.

Woodberry T, Loughland JR, Minigo G, Burel JG, Amante FH, Piera KA, McNeil Y, Yeo TW, Good MF, Doolan DL, Engwerda CR, McCarthy JS, Anstey NM.

Infect Immun. 2017 May 23;85(6). pii: e00986-16. doi: 10.1128/IAI.00986-16. Print 2017 Jun.

7.

Polyfunctional and IFN-γ monofunctional human CD4+ T cell populations are molecularly distinct.

Burel JG, Apte SH, Groves PL, McCarthy JS, Doolan DL.

JCI Insight. 2017 Feb 9;2(3):e87499. doi: 10.1172/jci.insight.87499.

8.

An Integrated Workflow To Assess Technical and Biological Variability of Cell Population Frequencies in Human Peripheral Blood by Flow Cytometry.

Burel JG, Qian Y, Lindestam Arlehamn C, Weiskopf D, Zapardiel-Gonzalo J, Taplitz R, Gilman RH, Saito M, de Silva AD, Vijayanand P, Scheuermann RH, Sette A, Peters B.

J Immunol. 2017 Feb 15;198(4):1748-1758. doi: 10.4049/jimmunol.1601750. Epub 2017 Jan 9.

9.

Plasmodium vivax but Not Plasmodium falciparum Blood-Stage Infection in Humans Is Associated with the Expansion of a CD8+ T Cell Population with Cytotoxic Potential.

Burel JG, Apte SH, McCarthy JS, Doolan DL.

PLoS Negl Trop Dis. 2016 Dec 8;10(12):e0005031. doi: 10.1371/journal.pntd.0005031. eCollection 2016 Dec.

10.

Type I Interferons Regulate Immune Responses in Humans with Blood-Stage Plasmodium falciparum Infection.

Montes de Oca M, Kumar R, Rivera FL, Amante FH, Sheel M, Faleiro RJ, Bunn PT, Best SE, Beattie L, Ng SS, Edwards CL, Boyle GM, Price RN, Anstey NM, Loughland JR, Burel J, Doolan DL, Haque A, McCarthy JS, Engwerda CR.

Cell Rep. 2016 Oct 4;17(2):399-412. doi: 10.1016/j.celrep.2016.09.015.

11.

Reduced Plasmodium Parasite Burden Associates with CD38+ CD4+ T Cells Displaying Cytolytic Potential and Impaired IFN-γ Production.

Burel JG, Apte SH, Groves PL, Klein K, McCarthy JS, Doolan DL.

PLoS Pathog. 2016 Sep 23;12(9):e1005839. doi: 10.1371/journal.ppat.1005839. eCollection 2016 Sep.

12.

Development of a cytokine-secreting-based assay for the identification, sorting and transcriptomic analysis of polyfunctional human T cells.

Burel JG, Apte SH, Doolan DL.

Eur Cytokine Netw. 2015 Oct-Dec;26(4):67-72. doi: 10.1684/ecn.2015.0369.

13.

Profoundly Reduced CD1c+ Myeloid Dendritic Cell HLA-DR and CD86 Expression and Increased Tumor Necrosis Factor Production in Experimental Human Blood-Stage Malaria Infection.

Loughland JR, Minigo G, Burel J, Tipping PE, Piera KA, Amante FH, Engwerda CR, Good MF, Doolan DL, Anstey NM, McCarthy JS, Woodberry T.

Infect Immun. 2016 Apr 22;84(5):1403-1412. doi: 10.1128/IAI.01522-15. Print 2016 May.

14.

Systems Approaches towards Molecular Profiling of Human Immunity.

Burel JG, Apte SH, Doolan DL.

Trends Immunol. 2016 Jan;37(1):53-67. doi: 10.1016/j.it.2015.11.006. Epub 2015 Dec 5. Review.

PMID:
26669258
15.

Metadata management for high content screening in OMERO.

Li S, Besson S, Blackburn C, Carroll M, Ferguson RK, Flynn H, Gillen K, Leigh R, Lindner D, Linkert M, Moore WJ, Ramalingam B, Rozbicki E, Rustici G, Tarkowska A, Walczysko P, Williams E, Allan C, Burel JM, Moore J, Swedlow JR.

Methods. 2016 Mar 1;96:27-32. doi: 10.1016/j.ymeth.2015.10.006. Epub 2015 Oct 22.

16.

[The inconsistency of parental authority with minor parents].

Burel J, Balençon M.

Arch Pediatr. 2015 Sep;22(9):905-7. doi: 10.1016/j.arcped.2015.06.016. Epub 2015 Jul 29. French. No abstract available.

PMID:
26231319
17.

Publishing and sharing multi-dimensional image data with OMERO.

Burel JM, Besson S, Blackburn C, Carroll M, Ferguson RK, Flynn H, Gillen K, Leigh R, Li S, Lindner D, Linkert M, Moore WJ, Ramalingam B, Rozbicki E, Tarkowska A, Walczysko P, Allan C, Moore J, Swedlow JR.

Mamm Genome. 2015 Oct;26(9-10):441-7. doi: 10.1007/s00335-015-9587-6. Epub 2015 Jul 30.

18.

Exome Sequencing to Predict Neoantigens in Melanoma.

Pritchard AL, Burel JG, Neller MA, Hayward NK, Lopez JA, Fatho M, Lennerz V, Wölfel T, Schmidt CW.

Cancer Immunol Res. 2015 Sep;3(9):992-8. doi: 10.1158/2326-6066.CIR-15-0088. Epub 2015 Jun 5.

19.

Asthma is associated with multiple alterations in anti-viral innate signalling pathways.

Pritchard AL, White OJ, Burel JG, Carroll ML, Phipps S, Upham JW.

PLoS One. 2014 Sep 9;9(9):e106501. doi: 10.1371/journal.pone.0106501. eCollection 2014.

20.

Clinical factors associated with the humoral immune response to influenza vaccination in chronic obstructive pulmonary disease.

Nath KD, Burel JG, Shankar V, Pritchard AL, Towers M, Looke D, Davies JM, Upham JW.

Int J Chron Obstruct Pulmon Dis. 2014;9:51-6. doi: 10.2147/COPD.S53590. Epub 2013 Dec 24.

21.

Reduced rhinovirus-specific antibodies are associated with acute exacerbations of chronic obstructive pulmonary disease requiring hospitalisation.

Yerkovich ST, Hales BJ, Carroll ML, Burel JG, Towers MA, Smith DJ, Thomas WR, Upham JW.

BMC Pulm Med. 2012 Jul 31;12:37. doi: 10.1186/1471-2466-12-37.

22.

Innate interferons inhibit allergen and microbial specific T(H)2 responses.

Pritchard AL, White OJ, Burel JG, Upham JW.

Immunol Cell Biol. 2012 Nov;90(10):974-7. doi: 10.1038/icb.2012.39. Epub 2012 Jul 24.

PMID:
22825591
23.

Innate IFNs and plasmacytoid dendritic cells constrain Th2 cytokine responses to rhinovirus: a regulatory mechanism with relevance to asthma.

Pritchard AL, Carroll ML, Burel JG, White OJ, Phipps S, Upham JW.

J Immunol. 2012 Jun 15;188(12):5898-905. doi: 10.4049/jimmunol.1103507. Epub 2012 May 18.

24.

OMERO: flexible, model-driven data management for experimental biology.

Allan C, Burel JM, Moore J, Blackburn C, Linkert M, Loynton S, Macdonald D, Moore WJ, Neves C, Patterson A, Porter M, Tarkowska A, Loranger B, Avondo J, Lagerstedt I, Lianas L, Leo S, Hands K, Hay RT, Patwardhan A, Best C, Kleywegt GJ, Zanetti G, Swedlow JR.

Nat Methods. 2012 Feb 28;9(3):245-53. doi: 10.1038/nmeth.1896.

25.

Metadata matters: access to image data in the real world.

Linkert M, Rueden CT, Allan C, Burel JM, Moore W, Patterson A, Loranger B, Moore J, Neves C, Macdonald D, Tarkowska A, Sticco C, Hill E, Rossner M, Eliceiri KW, Swedlow JR.

J Cell Biol. 2010 May 31;189(5):777-82. doi: 10.1083/jcb.201004104.

26.

Open tools for storage and management of quantitative image data.

Moore J, Allan C, Burel JM, Loranger B, MacDonald D, Monk J, Swedlow JR.

Methods Cell Biol. 2008;85:555-70.

PMID:
18155479
27.

The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging.

Goldberg IG, Allan C, Burel JM, Creager D, Falconi A, Hochheiser H, Johnston J, Mellen J, Sorger PK, Swedlow JR.

Genome Biol. 2005;6(5):R47. Epub 2005 May 3.

28.

[Temporomandibular joint prosthesis. A retrospective study from 1947].

Burel JP, Van Reck J.

Acta Stomatol Belg. 1997 Mar;94(1):9-21. French.

PMID:
9923106
29.

[Titanium condylar abutment: the contribution of 3D computed tomography].

Burel JP, Van Reck J.

Acta Stomatol Belg. 1996 Dec;93(4):149-53. French.

PMID:
9658634
30.

[On chemotherapy of "cancer of the eye" in bovines by ethyleneimino-benzoquinone].

Lombard C, Perrier M, Burel J.

Bull Acad Vet Fr. 1966 Jun;39(6):203-7. French. No abstract available.

PMID:
6006994

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