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Items: 38

1.

Unexpected invasion of miniature inverted-repeat transposable elements in viral genomes.

Zhang HH, Zhou QZ, Wang PL, Xiong XM, Luchetti A, Raoult D, Levasseur A, Santini S, Abergel C, Legendre M, Drezen JM, Béliveau C, Cusson M, Jiang SH, Bao HO, Sun C, Bureau TE, Cheng PF, Han MJ, Zhang Z, Zhang XG, Dai FY.

Mob DNA. 2018 Jun 18;9:19. doi: 10.1186/s13100-018-0125-4. eCollection 2018.

2.

Exaptation of transposable element coding sequences.

Joly-Lopez Z, Bureau TE.

Curr Opin Genet Dev. 2018 Apr;49:34-42. doi: 10.1016/j.gde.2018.02.011. Epub 2018 Mar 8. Review.

PMID:
29525543
3.

Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.

Joly-Lopez Z, Forczek E, Vello E, Hoen DR, Tomita A, Bureau TE.

Front Plant Sci. 2017 Nov 28;8:2027. doi: 10.3389/fpls.2017.02027. eCollection 2017.

4.

Phylogenetic and Genomic Analyses Resolve the Origin of Important Plant Genes Derived from Transposable Elements.

Joly-Lopez Z, Hoen DR, Blanchette M, Bureau TE.

Mol Biol Evol. 2016 Aug;33(8):1937-56. doi: 10.1093/molbev/msw067. Epub 2016 Apr 28.

5.

A Comprehensive Approach to Assess Arabidopsis Survival Phenotype in Water-Limited Condition Using a Non-invasive High-Throughput Phenomics Platform.

Vello E, Tomita A, Diallo AO, Bureau TE.

Front Plant Sci. 2015 Dec 15;6:1101. doi: 10.3389/fpls.2015.01101. eCollection 2015.

6.

A call for benchmarking transposable element annotation methods.

Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, Wheeler TJ, Bureau TE, Blanchette M.

Mob DNA. 2015 Aug 4;6:13. doi: 10.1186/s13100-015-0044-6. eCollection 2015.

7.

The butterfly plant arms-race escalated by gene and genome duplications.

Edger PP, Heidel-Fischer HM, Bekaert M, Rota J, Glöckner G, Platts AE, Heckel DG, Der JP, Wafula EK, Tang M, Hofberger JA, Smithson A, Hall JC, Blanchette M, Bureau TE, Wright SI, dePamphilis CW, Eric Schranz M, Barker MS, Conant GC, Wahlberg N, Vogel H, Pires JC, Wheat CW.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):8362-6. doi: 10.1073/pnas.1503926112. Epub 2015 Jun 22.

8.

Discovery of novel genes derived from transposable elements using integrative genomic analysis.

Hoen DR, Bureau TE.

Mol Biol Evol. 2015 Jun;32(6):1487-506. doi: 10.1093/molbev/msv042. Epub 2015 Feb 23.

PMID:
25713212
9.

Diversity and evolution of transposable elements in Arabidopsis.

Joly-Lopez Z, Bureau TE.

Chromosome Res. 2014 Jun;22(2):203-16. doi: 10.1007/s10577-014-9418-8. Review.

PMID:
24801342
10.

An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions.

Haudry A, Platts AE, Vello E, Hoen DR, Leclercq M, Williamson RJ, Forczek E, Joly-Lopez Z, Steffen JG, Hazzouri KM, Dewar K, Stinchcombe JR, Schoen DJ, Wang X, Schmutz J, Town CD, Edger PP, Pires JC, Schumaker KS, Jarvis DE, Mandáková T, Lysak MA, van den Bergh E, Schranz ME, Harrison PM, Moses AM, Bureau TE, Wright SI, Blanchette M.

Nat Genet. 2013 Aug;45(8):891-8. doi: 10.1038/ng.2684. Epub 2013 Jun 30.

PMID:
23817568
11.

A gene family derived from transposable elements during early angiosperm evolution has reproductive fitness benefits in Arabidopsis thaliana.

Joly-Lopez Z, Forczek E, Hoen DR, Juretic N, Bureau TE.

PLoS Genet. 2012 Sep;8(9):e1002931. doi: 10.1371/journal.pgen.1002931. Epub 2012 Sep 6.

12.

Modulation of auxin-binding protein 1 gene expression in maize and the teosintes by transposon insertions in its promoter.

Elrouby N, Bureau TE.

Mol Genet Genomics. 2012 Feb;287(2):143-53. doi: 10.1007/s00438-011-0667-3. Epub 2011 Dec 21.

PMID:
22187004
13.

Bs1, a new chimeric gene formed by retrotransposon-mediated exon shuffling in maize.

Elrouby N, Bureau TE.

Plant Physiol. 2010 Jul;153(3):1413-24. doi: 10.1104/pp.110.157420. Epub 2010 May 20.

14.

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice.

McNally KL, Childs KL, Bohnert R, Davidson RM, Zhao K, Ulat VJ, Zeller G, Clark RM, Hoen DR, Bureau TE, Stokowski R, Ballinger DG, Frazer KA, Cox DR, Padhukasahasram B, Bustamante CD, Weigel D, Mackill DJ, Bruskiewich RM, Rätsch G, Buell CR, Leung H, Leach JE.

Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12273-8. doi: 10.1073/pnas.0900992106. Epub 2009 Jul 13.

15.

The Rice Annotation Project Database (RAP-DB): 2008 update.

Rice Annotation Project, Tanaka T, Antonio BA, Kikuchi S, Matsumoto T, Nagamura Y, Numa H, Sakai H, Wu J, Itoh T, Sasaki T, Aono R, Fujii Y, Habara T, Harada E, Kanno M, Kawahara Y, Kawashima H, Kubooka H, Matsuya A, Nakaoka H, Saichi N, Sanbonmatsu R, Sato Y, Shinso Y, Suzuki M, Takeda J, Tanino M, Todokoro F, Yamaguchi K, Yamamoto N, Yamasaki C, Imanishi T, Okido T, Tada M, Ikeo K, Tateno Y, Gojobori T, Lin YC, Wei FJ, Hsing YI, Zhao Q, Han B, Kramer MR, McCombie RW, Lonsdale D, O'Donovan CC, Whitfield EJ, Apweiler R, Koyanagi KO, Khurana JP, Raghuvanshi S, Singh NK, Tyagi AK, Haberer G, Fujisawa M, Hosokawa S, Ito Y, Ikawa H, Shibata M, Yamamoto M, Bruskiewich RM, Hoen DR, Bureau TE, Namiki N, Ohyanagi H, Sakai Y, Nobushima S, Sakata K, Barrero RA, Sato Y, Souvorov A, Smith-White B, Tatusova T, An S, An G, OOta S, Fuks G, Fuks G, Messing J, Christie KR, Lieberherr D, Kim H, Zuccolo A, Wing RA, Nobuta K, Green PJ, Lu C, Meyers BC, Chaparro C, Piegu B, Panaud O, Echeverria M.

Nucleic Acids Res. 2008 Jan;36(Database issue):D1028-33. Epub 2007 Dec 17.

16.

Transposon-mediated expansion and diversification of a family of ULP-like genes.

Hoen DR, Park KC, Elrouby N, Yu Z, Mohabir N, Cowan RK, Bureau TE.

Mol Biol Evol. 2006 Jun;23(6):1254-68. Epub 2006 Mar 31.

PMID:
16581939
17.

The evolutionary fate of MULE-mediated duplications of host gene fragments in rice.

Juretic N, Hoen DR, Huynh ML, Harrison PM, Bureau TE.

Genome Res. 2005 Sep;15(9):1292-7.

18.

Genomic mutation in lines of Arabidopsis thaliana exposed to ultraviolet-B radiation.

MacKenzie JL, Saadé FE, Le QH, Bureau TE, Schoen DJ.

Genetics. 2005 Oct;171(2):715-23. Epub 2005 Jul 5.

19.

MUSTANG is a novel family of domesticated transposase genes found in diverse angiosperms.

Cowan RK, Hoen DR, Schoen DJ, Bureau TE.

Mol Biol Evol. 2005 Oct;22(10):2084-9. Epub 2005 Jun 29.

PMID:
15987878
20.

Transposable element annotation of the rice genome.

Juretic N, Bureau TE, Bruskiewich RM.

Bioinformatics. 2004 Jan 22;20(2):155-60.

PMID:
14734305
21.
22.
23.

Population dynamics of an Ac-like transposable element in self- and cross-pollinating arabidopsis.

Wright SI, Le QH, Schoen DJ, Bureau TE.

Genetics. 2001 Jul;158(3):1279-88.

24.

Mutator-like elements in Arabidopsis thaliana. Structure, diversity and evolution.

Yu Z, Wright SI, Bureau TE.

Genetics. 2000 Dec;156(4):2019-31.

25.
27.
28.

LTR-retrotransposons and MITEs: important players in the evolution of plant genomes.

Wessler SR, Bureau TE, White SE.

Curr Opin Genet Dev. 1995 Dec;5(6):814-21. Review.

PMID:
8745082
29.

Transposon-mediated chromosomal rearrangements and gene duplications in the formation of the maize R-r complex.

Walker EL, Robbins TP, Bureau TE, Kermicle J, Dellaporta SL.

EMBO J. 1995 May 15;14(10):2350-63.

31.

Transduction of a cellular gene by a plant retroelement.

Bureau TE, White SE, Wessler SR.

Cell. 1994 May 20;77(4):479-80. No abstract available.

PMID:
8187172
32.
33.
34.

Oryzalin, a dinitroaniline herbicide, binds to plant tubulin and inhibits microtubule polymerization in vitro.

Morejohn LC, Bureau TE, Molè-Bajer J, Bajer AS, Fosket DE.

Planta. 1987 Oct;172(2):252-64. doi: 10.1007/BF00394595.

PMID:
24225878
35.

In vitro synthesis of cellulose II from a cytoplasmic membrane fraction of Acetobacter xylinum.

Bureau TE, Brown RM.

Proc Natl Acad Sci U S A. 1987 Oct;84(20):6985-9.

36.

Resistance of Rosa microtubule polymerization to colchicine results from a low-affinity interaction of colchicine and tubulin.

Morejohn LC, Bureau TE, Tocchi LP, Fosket DE.

Planta. 1987 Feb;170(2):230-41. doi: 10.1007/BF00397893.

PMID:
24232883
37.

Inhibition of plant cell proteolytic activities that degrade tubulin.

Morejohn LC, Bureau TE, Fosket DE.

Cell Biol Int Rep. 1985 Sep;9(9):849-57.

PMID:
2864138
38.

Tubulins from different higher plant species are immunologically nonidentical and bind colchicine differentially.

Morejohn LC, Bureau TE, Tocchi LP, Fosket DE.

Proc Natl Acad Sci U S A. 1984 Mar;81(5):1440-4.

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