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Items: 40

1.

Recombination drives the evolution of mutational robustness.

Singhal S, Gomez SM, Burch CL.

Curr Opin Syst Biol. 2019 Feb;13:142-149. doi: 10.1016/j.coisb.2018.12.003. Epub 2019 Jan 2.

2.

Population structure promotes the evolution of costly sex in artificial gene networks.

Whitlock AOB, Azevedo RBR, Burch CL.

Evolution. 2019 Jun;73(6):1089-1100. doi: 10.1111/evo.13733. Epub 2019 Apr 29.

PMID:
30997680
3.

Evolutionary pathways to NS5A inhibitor resistance in genotype 1 hepatitis C virus.

Zhou S, Williford SE, McGivern DR, Burch CL, Hu F, Benzine T, Ingravallo P, Asante-Appiah E, Howe AYM, Swanstrom R, Lemon SM.

Antiviral Res. 2018 Oct;158:45-51. doi: 10.1016/j.antiviral.2018.07.024. Epub 2018 Aug 3.

4.

Permissivity of Dipeptidyl Peptidase 4 Orthologs to Middle East Respiratory Syndrome Coronavirus Is Governed by Glycosylation and Other Complex Determinants.

Peck KM, Scobey T, Swanstrom J, Jensen KL, Burch CL, Baric RS, Heise MT.

J Virol. 2017 Sep 12;91(19). pii: e00534-17. doi: 10.1128/JVI.00534-17. Print 2017 Oct 1.

5.

The emergence of performance trade-offs during local adaptation: insights from experimental evolution.

Bono LM, Smith LB Jr, Pfennig DW, Burch CL.

Mol Ecol. 2017 Apr;26(7):1720-1733. doi: 10.1111/mec.13979. Epub 2017 Jan 13. Review.

PMID:
28029196
6.

An Evolving Genetic Architecture Interacts with Hill-Robertson Interference to Determine the Benefit of Sex.

Whitlock AO, Peck KM, Azevedo RB, Burch CL.

Genetics. 2016 Jun;203(2):923-36. doi: 10.1534/genetics.116.186916. Epub 2016 Apr 20.

7.

Coronavirus Host Range Expansion and Middle East Respiratory Syndrome Coronavirus Emergence: Biochemical Mechanisms and Evolutionary Perspectives.

Peck KM, Burch CL, Heise MT, Baric RS.

Annu Rev Virol. 2015 Nov;2(1):95-117. doi: 10.1146/annurev-virology-100114-055029. Epub 2015 Aug 7. Review.

PMID:
26958908
8.

Evolutionary rescue and the coexistence of generalist and specialist competitors: an experimental test.

Bono LM, Gensel CL, Pfennig DW, Burch CL.

Proc Biol Sci. 2015 Dec 22;282(1821):20151932. doi: 10.1098/rspb.2015.1932.

9.

Dominance effects of deleterious and beneficial mutations in a single gene of the RNA virus ϕ6.

Joseph SB, Peck KM, Burch CL.

PLoS One. 2014 Jun 19;9(6):e97717. doi: 10.1371/journal.pone.0097717. eCollection 2014.

10.

Comparison of SIV and HIV-1 genomic RNA structures reveals impact of sequence evolution on conserved and non-conserved structural motifs.

Pollom E, Dang KK, Potter EL, Gorelick RJ, Burch CL, Weeks KM, Swanstrom R.

PLoS Pathog. 2013;9(4):e1003294. doi: 10.1371/journal.ppat.1003294. Epub 2013 Apr 4.

11.

Competition and the origins of novelty: experimental evolution of niche-width expansion in a virus.

Bono LM, Gensel CL, Pfennig DW, Burch CL.

Biol Lett. 2013 Feb 23;9(1):20120616. doi: 10.1098/rsbl.2012.0616. Epub 2012 Oct 17.

12.

Uncertain outcomes: adjusting for misclassification in antimalarial efficacy studies.

Porter KA, Burch CL, Poole C, Juliano JJ, Cole SR, Meshnick SR.

Epidemiol Infect. 2011 Apr;139(4):544-51. doi: 10.1017/S0950268810001652. Epub 2010 Jul 12.

13.

Genetic architecture and the evolution of sex.

Lohaus R, Burch CL, Azevedo RB.

J Hered. 2010 Mar-Apr;101 Suppl 1:S142-57. doi: 10.1093/jhered/esq013.

PMID:
20421324
14.

Architecture and secondary structure of an entire HIV-1 RNA genome.

Watts JM, Dang KK, Gorelick RJ, Leonard CW, Bess JW Jr, Swanstrom R, Burch CL, Weeks KM.

Nature. 2009 Aug 6;460(7256):711-6. doi: 10.1038/nature08237.

15.

Cross-sectional characterization of HIV-1 env compartmentalization in cerebrospinal fluid over the full disease course.

Harrington PR, Schnell G, Letendre SL, Ritola K, Robertson K, Hall C, Burch CL, Jabara CB, Moore DT, Ellis RJ, Price RW, Swanstrom R.

AIDS. 2009 May 15;23(8):907-15. doi: 10.1097/QAD.0b013e3283299129.

16.

Hotter is better and broader: thermal sensitivity of fitness in a population of bacteriophages.

Knies JL, Kingsolver JG, Burch CL.

Am Nat. 2009 Apr;173(4):419-30. doi: 10.1086/597224.

PMID:
19232002
17.

Major coexisting human immunodeficiency virus type 1 env gene subpopulations in the peripheral blood are produced by cells with similar turnover rates and show little evidence of genetic compartmentalization.

Ince WL, Harrington PR, Schnell GL, Patel-Chhabra M, Burch CL, Menezes P, Price RW, Eron JJ Jr, Swanstrom RI.

J Virol. 2009 May;83(9):4068-80. doi: 10.1128/JVI.02486-08. Epub 2009 Feb 11.

18.

Coinfection rates in Φ6 bacteriophage are enhanced by virus-induced changes in host cells.

Joseph SB, Hanley KA, Chao L, Burch CL.

Evol Appl. 2009 Feb;2(1):24-31. doi: 10.1111/j.1752-4571.2008.00055.x. Epub 2008 Dec 23.

19.

Beneficial fitness effects are not exponential for two viruses.

Rokyta DR, Beisel CJ, Joyce P, Ferris MT, Burch CL, Wichman HA.

J Mol Evol. 2008 Oct;67(4):368-76. doi: 10.1007/s00239-008-9153-x. Epub 2008 Sep 9.

20.

Compensatory evolution in RNA secondary structures increases substitution rate variation among sites.

Knies JL, Dang KK, Vision TJ, Hoffman NG, Swanstrom R, Burch CL.

Mol Biol Evol. 2008 Aug;25(8):1778-87. doi: 10.1093/molbev/msn130. Epub 2008 Jun 4.

21.

The molecular epidemiology of HIV-1 envelope diversity during HIV-1 subtype C vertical transmission in Malawian mother-infant pairs.

Kwiek JJ, Russell ES, Dang KK, Burch CL, Mwapasa V, Meshnick SR, Swanstrom R.

AIDS. 2008 Apr 23;22(7):863-71. doi: 10.1097/QAD.0b013e3282f51ea0.

22.

Optimal foraging predicts the ecology but not the evolution of host specialization in bacteriophages.

Guyader S, Burch CL.

PLoS One. 2008 Apr 16;3(4):e1946. doi: 10.1371/journal.pone.0001946.

23.

Evolution of host specificity drives reproductive isolation among RNA viruses.

Duffy S, Burch CL, Turner PE.

Evolution. 2007 Nov;61(11):2614-22. Epub 2007 Oct 1.

PMID:
17908251
24.

High frequency of mutations that expand the host range of an RNA virus.

Ferris MT, Joyce P, Burch CL.

Genetics. 2007 Jun;176(2):1013-22. Epub 2007 Apr 3.

25.

Experimental estimate of the abundance and effects of nearly neutral mutations in the RNA virus phi 6.

Burch CL, Guyader S, Samarov D, Shen H.

Genetics. 2007 May;176(1):467-76. Epub 2007 Mar 4.

26.

The genetic basis of thermal reaction norm evolution in lab and natural phage populations.

Knies JL, Izem R, Supler KL, Kingsolver JG, Burch CL.

PLoS Biol. 2006 Jul;4(7):e201.

27.

Sexual reproduction selects for robustness and negative epistasis in artificial gene networks.

Azevedo RB, Lohaus R, Srinivasan S, Dang KK, Burch CL.

Nature. 2006 Mar 2;440(7080):87-90. Erratum in: Nature. 2006 Oct 5;443(7111):598.

PMID:
16511495
28.

Horizontal gene transfer and the evolution of microvirid coliphage genomes.

Rokyta DR, Burch CL, Caudle SB, Wichman HA.

J Bacteriol. 2006 Feb;188(3):1134-42.

29.

Pleiotropic costs of niche expansion in the RNA bacteriophage phi 6.

Duffy S, Turner PE, Burch CL.

Genetics. 2006 Feb;172(2):751-7. Epub 2005 Nov 19.

30.
31.

Patterns of epistasis in RNA viruses: a review of the evidence from vaccine design.

Burch CL, Turner PE, Hanley KA.

J Evol Biol. 2003 Nov;16(6):1223-35.

32.

Kin selection and parasite evolution: higher and lower virulence with hard and soft selection.

Chao L, Hanley KA, Burch CL, Dahlberg C, Turner PE.

Q Rev Biol. 2000 Sep;75(3):261-75. Review.

PMID:
11008699
33.

Evolvability of an RNA virus is determined by its mutational neighbourhood.

Burch CL, Chao L.

Nature. 2000 Aug 10;406(6796):625-8.

PMID:
10949302
34.
35.

Hybrid frequencies confirm limit to coinfection in the RNA bacteriophage phi6.

Turner PE, Burch CL, Hanley KA, Chao L.

J Virol. 1999 Mar;73(3):2420-4.

36.
37.

Genetic basis of Neisseria gonorrhoeae lipooligosaccharide antigenic variation.

Danaher RJ, Levin JC, Arking D, Burch CL, Sandlin R, Stein DC.

J Bacteriol. 1995 Dec;177(24):7275-9.

38.

Origin of phosphorescence signals reemitted from tissues.

Sevick-Muraca EM, Burch CL.

Opt Lett. 1994 Dec 1;19(23):1928-30.

PMID:
19855698
39.

Localization of absorbers in scattering media by use of frequency-domain measurements of time-dependent photon migration.

Sevick EM, Frisoli JK, Burch CL, Lakowicz JR.

Appl Opt. 1994 Jun 1;33(16):3562-70. doi: 10.1364/AO.33.003562.

40.

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