Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 113

1.

The functional repertoire contained within the native microbiota of the model nematode Caenorhabditis elegans.

Zimmermann J, Obeng N, Yang W, Pees B, Petersen C, Waschina S, Kissoyan KA, Aidley J, Hoeppner MP, Bunk B, Spröer C, Leippe M, Dierking K, Kaleta C, Schulenburg H.

ISME J. 2019 Sep 4. doi: 10.1038/s41396-019-0504-y. [Epub ahead of print]

PMID:
31484996
2.

Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics.

Nelkner J, Tejerizo GT, Hassa J, Lin TW, Witte J, Verwaaijen B, Winkler A, Bunk B, Spröer C, Overmann J, Grosch R, Pühler A, Schlüter AA.

Genes (Basel). 2019 Aug 9;10(8). pii: E601. doi: 10.3390/genes10080601.

3.

Next Generation DNA-Seq and Differential RNA-Seq Allow Re-annotation of the Pyrococcus furiosus DSM 3638 Genome and Provide Insights Into Archaeal Antisense Transcription.

Grünberger F, Reichelt R, Bunk B, Spröer C, Overmann J, Rachel R, Grohmann D, Hausner W.

Front Microbiol. 2019 Jul 12;10:1603. doi: 10.3389/fmicb.2019.01603. eCollection 2019.

4.

A novel group of Rhizobium tumorigenes-like agrobacteria associated with crown gall disease of rhododendron and blueberry.

Kuzmanović N, Behrens P, Idczak E, Wagner S, Goetz M, Spröer C, Bunk B, Overmann J, Smalla K.

Phytopathology. 2019 Jul 11. doi: 10.1094/PHYTO-05-19-0167-R. [Epub ahead of print]

PMID:
31294681
5.

Inactivation of farR Causes High Rhodomyrtone Resistance and Increased Pathogenicity in Staphylococcus aureus.

Nguyen MT, Saising J, Tribelli PM, Nega M, Diene SM, François P, Schrenzel J, Spröer C, Bunk B, Ebner P, Hertlein T, Kumari N, Härtner T, Wistuba D, Voravuthikunchai SP, Mäder U, Ohlsen K, Götz F.

Front Microbiol. 2019 May 28;10:1157. doi: 10.3389/fmicb.2019.01157. eCollection 2019.

6.

Comparison of VITEK 2, MALDI-TOF MS, 16S rRNA gene sequencing, and whole-genome sequencing for identification of Roseomonas mucosa.

Rudolph WW, Gunzer F, Trauth M, Bunk B, Bigge R, Schröttner P.

Microb Pathog. 2019 Sep;134:103576. doi: 10.1016/j.micpath.2019.103576. Epub 2019 Jun 8.

PMID:
31185244
7.

Corrigendum: Fuerstia marisgermanicae gen. nov., sp. nov., an Unusual Member of the Phylum Planctomycetes From the German Wadden Sea.

Kohn T, Heuer A, Jogler M, Vollmers J, Boedeker C, Bunk B, Rast P, Borchert D, Glöckner I, Freese HM, Klenk HP, Overmann J, Kaster AK, Rohde M, Wiegand S, Jogler C.

Front Microbiol. 2019 May 15;10:1029. doi: 10.3389/fmicb.2019.01029. eCollection 2019.

8.

Leucobacter muris sp. nov., isolated from the nose of a laboratory mouse.

Benga L, Spröer C, Schumann P, Verbarg S, Bunk B, Engelhardt E, Benten WPM, Sager M.

Int J Syst Evol Microbiol. 2019 Jul;69(7):2095-2100. doi: 10.1099/ijsem.0.003446. Epub 2019 May 17.

PMID:
31099739
9.

Detection of Robinsoniella peoriensis in multiple bone samples of a trauma patient.

Schröttner P, Hartwich K, Bunk B, Schober I, Helbig S, Rudolph WW, Gunzer F.

Anaerobe. 2019 May 7;59:14-18. doi: 10.1016/j.anaerobe.2019.05.001. [Epub ahead of print]

PMID:
31075311
10.

Isolation, characterization and analysis of bacteriophages from the haloalkaline lake Elmenteita, Kenya.

Akhwale JK, Rohde M, Rohde C, Bunk B, Spröer C, Boga HI, Klenk HP, Wittmann J.

PLoS One. 2019 Apr 25;14(4):e0215734. doi: 10.1371/journal.pone.0215734. eCollection 2019.

11.

Comparative Transcriptomic Profiling of Yersinia enterocolitica O:3 and O:8 Reveals Major Expression Differences of Fitness- and Virulence-Relevant Genes Indicating Ecological Separation.

Schmühl C, Beckstette M, Heroven AK, Bunk B, Spröer C, McNally A, Overmann J, Dersch P.

mSystems. 2019 Apr 23;4(2). pii: e00239-18. doi: 10.1128/mSystems.00239-18. eCollection 2019 Mar-Apr.

12.

Genomic and transcriptomic characterization of Pseudomonas aeruginosa small colony variants derived from a chronic infection model.

Irvine S, Bunk B, Bayes HK, Spröer C, Connolly JPR, Six A, Evans TJ, Roe AJ, Overmann J, Walker D.

Microb Genom. 2019 Apr;5(4). doi: 10.1099/mgen.0.000262. Epub 2019 Mar 28.

13.

Complete Genome Sequence of the Silicimonas algicola Type Strain, a Representative of the Marine Roseobacter Group Isolated from the Cell Surface of the Marine Diatom Thalassiosira delicatula.

Crenn K, Bunk B, Spröer C, Overmann J, Jeanthon C.

Microbiol Resour Announc. 2019 Feb 28;8(9). pii: e00108-19. doi: 10.1128/MRA.00108-19. eCollection 2019 Feb.

14.

Comparative genomic analysis of eight novel haloalkaliphilic bacteriophages from Lake Elmenteita, Kenya.

Akhwale JK, Rohde M, Rohde C, Bunk B, Spröer C, Klenk HP, Boga HI, Wittmann J.

PLoS One. 2019 Feb 14;14(2):e0212102. doi: 10.1371/journal.pone.0212102. eCollection 2019.

15.

Cobaviruses - a new globally distributed phage group infecting Rhodobacteraceae in marine ecosystems.

Bischoff V, Bunk B, Meier-Kolthoff JP, Spröer C, Poehlein A, Dogs M, Nguyen M, Petersen J, Daniel R, Overmann J, Göker M, Simon M, Brinkhoff T, Moraru C.

ISME J. 2019 Jun;13(6):1404-1421. doi: 10.1038/s41396-019-0362-7. Epub 2019 Feb 4.

PMID:
30718806
16.

Genomic analysis of three Clostridioides difficile isolates from urban water sources.

Numberger D, Riedel T, McEwen G, Nübel U, Frentrup M, Schober I, Bunk B, Spröer C, Overmann J, Grossart HP, Greenwood AD.

Anaerobe. 2019 Apr;56:22-26. doi: 10.1016/j.anaerobe.2019.01.002. Epub 2019 Jan 8.

PMID:
30633971
17.

Divergent evolution in the genomes of closely related lacertids, Lacerta viridis and L. bilineata, and implications for speciation.

Kolora SRR, Weigert A, Saffari A, Kehr S, Walter Costa MB, Spröer C, Indrischek H, Chintalapati M, Lohse K, Doose G, Overmann J, Bunk B, Bleidorn C, Grimm-Seyfarth A, Henle K, Nowick K, Faria R, Stadler PF, Schlegel M.

Gigascience. 2019 Feb 1;8(2). pii: giy160. doi: 10.1093/gigascience/giy160.

18.

Kyrpidia spormannii sp. nov., a thermophilic, hydrogen-oxidizing, facultative autotroph, isolated from hydrothermal systems at São Miguel Island, and emended description of the genus Kyrpidia.

Reiner JE, Jung T, Lapp CJ, Siedler M, Bunk B, Overmann J, Gescher J.

Int J Syst Evol Microbiol. 2018 Dec;68(12):3735-3740. doi: 10.1099/ijsem.0.003037. Epub 2018 Sep 20.

PMID:
30234478
19.

Comparative Genomics Reveal a Flagellar System, a Type VI Secretion System and Plant Growth-Promoting Gene Clusters Unique to the Endophytic Bacterium Kosakonia radicincitans.

Becker M, Patz S, Becker Y, Berger B, Drungowski M, Bunk B, Overmann J, Spröer C, Reetz J, Tchuisseu Tchakounte GV, Ruppel S.

Front Microbiol. 2018 Aug 30;9:1997. doi: 10.3389/fmicb.2018.01997. eCollection 2018.

20.

Long-read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environments.

Heeger F, Bourne EC, Baschien C, Yurkov A, Bunk B, Spröer C, Overmann J, Mazzoni CJ, Monaghan MT.

Mol Ecol Resour. 2018 Nov;18(6):1500-1514. doi: 10.1111/1755-0998.12937. Epub 2018 Sep 23.

PMID:
30106226
21.

Genetic Adaptation of a Mevalonate Pathway Deficient Mutant in Staphylococcus aureus.

Reichert S, Ebner P, Bonetti EJ, Luqman A, Nega M, Schrenzel J, Spröer C, Bunk B, Overmann J, Sass P, François P, Götz F.

Front Microbiol. 2018 Jul 12;9:1539. doi: 10.3389/fmicb.2018.01539. eCollection 2018.

22.

The complete genome sequence of Rhodobaca barguzinensis alga05 (DSM 19920) documents its adaptation for life in soda lakes.

Kopejtka K, Tomasch J, Bunk B, Spröer C, Wagner-Döbler I, Koblížek M.

Extremophiles. 2018 Nov;22(6):839-849. doi: 10.1007/s00792-018-1041-8. Epub 2018 Jul 18.

PMID:
30022245
23.

Convergent Loss of ABC Transporter Genes From Clostridioides difficile Genomes Is Associated With Impaired Tyrosine Uptake and p-Cresol Production.

Steglich M, Hofmann JD, Helmecke J, Sikorski J, Spröer C, Riedel T, Bunk B, Overmann J, Neumann-Schaal M, Nübel U.

Front Microbiol. 2018 May 8;9:901. doi: 10.3389/fmicb.2018.00901. eCollection 2018.

24.

Whole-genome comparison of high and low virulent Staphylococcus aureus isolates inducing implant-associated bone infections.

Mannala GK, Koettnitz J, Mohamed W, Sommer U, Lips KS, Spröer C, Bunk B, Overmann J, Hain T, Heiss C, Domann E, Alt V.

Int J Med Microbiol. 2018 Jul;308(5):505-513. doi: 10.1016/j.ijmm.2018.04.005. Epub 2018 Apr 25.

PMID:
29739668
25.

The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species.

Wu L, McCluskey K, Desmeth P, Liu S, Hideaki S, Yin Y, Moriya O, Itoh T, Kim CY, Lee JS, Zhou Y, Kawasaki H, Hazbón MH, Robert V, Boekhout T, Lima N, Evtushenko L, Boundy-Mills K, Bunk B, Moore ERB, Eurwilaichitr L, Ingsriswang S, Shah H, Yao S, Jin T, Huang J, Shi W, Sun Q, Fan G, Li W, Li X, Kurtböke I, Ma J.

Gigascience. 2018 May 1;7(5). doi: 10.1093/gigascience/giy026.

26.

Genome biology of a novel lineage of planctomycetes widespread in anoxic aquatic environments.

Spring S, Bunk B, Spröer C, Rohde M, Klenk HP.

Environ Microbiol. 2018 Jul;20(7):2438-2455. doi: 10.1111/1462-2920.14253. Epub 2018 Jul 26.

PMID:
29697183
27.

Whole-genome sequencing of a large collection of Myroides odoratimimus and Myroides odoratus isolates and antimicrobial susceptibility studies.

Gunzer F, Rudolph WW, Bunk B, Schober I, Peters S, Müller T, Oberheitmann B, Schröttner P.

Emerg Microbes Infect. 2018 Apr 4;7(1):61. doi: 10.1038/s41426-018-0061-x.

28.

Enterobacter bugandensis: a novel enterobacterial species associated with severe clinical infection.

Pati NB, Doijad SP, Schultze T, Mannala GK, Yao Y, Jaiswal S, Ryan D, Suar M, Gwozdzinski K, Bunk B, Mraheil MA, Marahiel MA, Hegemann JD, Spröer C, Goesmann A, Falgenhauer L, Hain T, Imirzalioglu C, Mshana SE, Overmann J, Chakraborty T.

Sci Rep. 2018 Mar 29;8(1):5392. doi: 10.1038/s41598-018-23069-z.

29.

Synchronous termination of replication of the two chromosomes is an evolutionary selected feature in Vibrionaceae.

Kemter FS, Messerschmidt SJ, Schallopp N, Sobetzko P, Lang E, Bunk B, Spröer C, Teschler JK, Yildiz FH, Overmann J, Waldminghaus T.

PLoS Genet. 2018 Mar 5;14(3):e1007251. doi: 10.1371/journal.pgen.1007251. eCollection 2018 Mar.

30.

Complete Genome Sequence of Kyrpidia sp. Strain EA-1, a Thermophilic Knallgas Bacterium, Isolated from the Azores.

Reiner JE, Lapp CJ, Bunk B, Spröer C, Overmann J, Gescher J.

Genome Announc. 2018 Jan 18;6(3). pii: e01505-17. doi: 10.1128/genomeA.01505-17.

31.

Host Specificity for Bacterial, Archaeal and Fungal Communities Determined for High- and Low-Microbial Abundance Sponge Species in Two Genera.

Chaib De Mares M, Sipkema D, Huang S, Bunk B, Overmann J, van Elsas JD.

Front Microbiol. 2017 Dec 20;8:2560. doi: 10.3389/fmicb.2017.02560. eCollection 2017.

32.

Packaging of Dinoroseobacter shibae DNA into Gene Transfer Agent Particles Is Not Random.

Tomasch J, Wang H, Hall ATK, Patzelt D, Preusse M, Petersen J, Brinkmann H, Bunk B, Bhuju S, Jarek M, Geffers R, Lang AS, Wagner-Döbler I.

Genome Biol Evol. 2018 Jan 1;10(1):359-369. doi: 10.1093/gbe/evy005.

33.

Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile.

Groß U, Brzuszkiewicz E, Gunka K, Starke J, Riedel T, Bunk B, Spröer C, Wetzel D, Poehlein A, Chibani C, Bohne W, Overmann J, Zimmermann O, Daniel R, Liesegang H.

BMC Genomics. 2018 Jan 2;19(1):1. doi: 10.1186/s12864-017-4368-0.

34.

Trajectories and Drivers of Genome Evolution in Surface-Associated Marine Phaeobacter.

Freese HM, Sikorski J, Bunk B, Scheuner C, Meier-Kolthoff JP, Spröer C, Gram L, Overmann J.

Genome Biol Evol. 2017 Dec 1;9(12):3297-3311. doi: 10.1093/gbe/evx249.

35.

Monitoring microevolution of OXA-48-producing Klebsiella pneumoniae ST147 in a hospital setting by SMRT sequencing.

Zautner AE, Bunk B, Pfeifer Y, Spröer C, Reichard U, Eiffert H, Scheithauer S, Groß U, Overmann J, Bohne W.

J Antimicrob Chemother. 2017 Oct 1;72(10):2737-2744. doi: 10.1093/jac/dkx216.

PMID:
29091199
36.

Genome and Methylome Variation in Helicobacter pylori With a cag Pathogenicity Island During Early Stages of Human Infection.

Nell S, Estibariz I, Krebes J, Bunk B, Graham DY, Overmann J, Song Y, Spröer C, Yang I, Wex T, Korlach J, Malfertheiner P, Suerbaum S.

Gastroenterology. 2018 Feb;154(3):612-623.e7. doi: 10.1053/j.gastro.2017.10.014. Epub 2017 Oct 21.

PMID:
29066327
37.

High-Quality Whole-Genome Sequences of the Oligo-Mouse-Microbiota Bacterial Community.

Garzetti D, Brugiroux S, Bunk B, Pukall R, McCoy KD, Macpherson AJ, Stecher B.

Genome Announc. 2017 Oct 19;5(42). pii: e00758-17. doi: 10.1128/genomeA.00758-17.

38.

The Composite 259-kb Plasmid of Martelella mediterranea DSM 17316T-A Natural Replicon with Functional RepABC Modules from Rhodobacteraceae and Rhizobiaceae.

Bartling P, Brinkmann H, Bunk B, Overmann J, Göker M, Petersen J.

Front Microbiol. 2017 Sep 21;8:1787. doi: 10.3389/fmicb.2017.01787. eCollection 2017.

39.

The Biofilm Inhibitor Carolacton Enters Gram-Negative Cells: Studies Using a TolC-Deficient Strain of Escherichia coli.

Donner J, Reck M, Bunk B, Jarek M, App CB, Meier-Kolthoff JP, Overmann J, Müller R, Kirschning A, Wagner-Döbler I.

mSphere. 2017 Sep 27;2(5). pii: e00375-17. doi: 10.1128/mSphereDirect.00375-17. eCollection 2017 Sep-Oct.

40.

Complete genome sequence of the nematicidal Bacillus thuringiensis MYBT18247.

Hollensteiner J, Poehlein A, Spröer C, Bunk B, Sheppard AE, Rosenstiel P, Schulenburg H, Liesegang H.

J Biotechnol. 2017 Oct 20;260:48-52. doi: 10.1016/j.jbiotec.2017.09.003. Epub 2017 Sep 9.

41.

Complete Genome sequence of the nematicidal Bacillus thuringiensis MYBT18246.

Hollensteiner J, Poehlein A, Spröer C, Bunk B, Sheppard AE, Rosentstiel P, Schulenburg H, Liesegang H.

Stand Genomic Sci. 2017 Aug 24;12:48. doi: 10.1186/s40793-017-0259-x. eCollection 2017.

42.

Complete Genome Sequence of blaCTX-M-27-Encoding Escherichia coli Strain H105 of Sequence Type 131 Lineage C1/H30R.

Ghosh H, Bunk B, Doijad S, Schmiedel J, Falgenhauer L, Spröer C, Imirzalioglu C, Overmann J, Chakraborty T.

Genome Announc. 2017 Aug 3;5(31). pii: e00736-17. doi: 10.1128/genomeA.00736-17.

43.

Global outbreak of severe Mycobacterium chimaera disease after cardiac surgery: a molecular epidemiological study.

van Ingen J, Kohl TA, Kranzer K, Hasse B, Keller PM, Katarzyna Szafrańska A, Hillemann D, Chand M, Schreiber PW, Sommerstein R, Berger C, Genoni M, Rüegg C, Troillet N, Widmer AF, Becker SL, Herrmann M, Eckmanns T, Haller S, Höller C, Debast SB, Wolfhagen MJ, Hopman J, Kluytmans J, Langelaar M, Notermans DW, Ten Oever J, van den Barselaar P, Vonk ABA, Vos MC, Ahmed N, Brown T, Crook D, Lamagni T, Phin N, Smith EG, Zambon M, Serr A, Götting T, Ebner W, Thürmer A, Utpatel C, Spröer C, Bunk B, Nübel U, Bloemberg GV, Böttger EC, Niemann S, Wagner D, Sax H.

Lancet Infect Dis. 2017 Oct;17(10):1033-1041. doi: 10.1016/S1473-3099(17)30324-9. Epub 2017 Jul 12.

PMID:
28711585
44.

Rapid and Consistent Evolution of Colistin Resistance in Extensively Drug-Resistant Pseudomonas aeruginosa during Morbidostat Culture.

Dößelmann B, Willmann M, Steglich M, Bunk B, Nübel U, Peter S, Neher RA.

Antimicrob Agents Chemother. 2017 Aug 24;61(9). pii: e00043-17. doi: 10.1128/AAC.00043-17. Print 2017 Sep.

45.

High metabolic versatility of different toxigenic and non-toxigenic Clostridioides difficile isolates.

Riedel T, Wetzel D, Hofmann JD, Plorin SPEO, Dannheim H, Berges M, Zimmermann O, Bunk B, Schober I, Spröer C, Liesegang H, Jahn D, Overmann J, Groß U, Neumann-Schaal M.

Int J Med Microbiol. 2017 Sep;307(6):311-320. doi: 10.1016/j.ijmm.2017.05.007. Epub 2017 Jun 1.

PMID:
28619474
46.

Genome Sequence of Escherichia coli E28, a Multidrug-Resistant Strain Isolated from a Chicken Carcass, and Its Spontaneously Inducible Prophage.

Schmidt I, Riedel T, Schober I, Bunk B, Spröer C, Bierbrodt A, Lehnherr H, Wittmann J.

Genome Announc. 2017 Jun 1;5(22). pii: e00348-17. doi: 10.1128/genomeA.00348-17.

47.

Tripartite species interaction: eukaryotic hosts suffer more from phage susceptible than from phage resistant bacteria.

Wendling CC, Piecyk A, Refardt D, Chibani C, Hertel R, Liesegang H, Bunk B, Overmann J, Roth O.

BMC Evol Biol. 2017 Apr 11;17(1):98. doi: 10.1186/s12862-017-0930-2.

48.

Manual curation and reannotation of the genomes of Clostridium difficile 630Δerm and C. difficile 630.

Dannheim H, Riedel T, Neumann-Schaal M, Bunk B, Schober I, Spröer C, Chibani CM, Gronow S, Liesegang H, Overmann J, Schomburg D.

J Med Microbiol. 2017 Mar;66(3):286-293. doi: 10.1099/jmm.0.000427.

PMID:
28357980
49.

Characterization and genome comparisons of three Achromobacter phages of the family Siphoviridae.

Dreiseikelmann B, Bunk B, Spröer C, Rohde M, Nimtz M, Wittmann J.

Arch Virol. 2017 Aug;162(8):2191-2201. doi: 10.1007/s00705-017-3347-8. Epub 2017 Mar 29.

PMID:
28357512
50.

Complete Genome and Plasmid Sequences of Staphylococcus aureus EDCC 5055 (DSM 28763), Used To Study Implant-Associated Infections.

Mannala GK, Hain T, Spröer C, Bunk B, Overmann J, Alt V, Domann E.

Genome Announc. 2017 Feb 23;5(8). pii: e01698-16. doi: 10.1128/genomeA.01698-16.

Supplemental Content

Support Center