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Items: 1 to 50 of 121

1.

Discovery of Paenibacillus larvae ERIC V: Phenotypic and genomic comparison to genotypes ERIC I-IV reveal different inventories of virulence factors which correlate with epidemiological prevalences of American Foulbrood.

Beims H, Bunk B, Erler S, Mohr KI, Spröer C, Pradella S, Günther G, Rohde M, von der Ohe W, Steinert M.

Int J Med Microbiol. 2020 Jan 16:151394. doi: 10.1016/j.ijmm.2020.151394. [Epub ahead of print]

PMID:
31959580
2.

Hypericibacter terrae gen. nov., sp. nov. and Hypericibacter adhaerens sp. nov., two new members of the family Rhodospirillaceae isolated from the rhizosphere of Hypericum perforatum.

Noviana Z, Vieira S, Pascual J, Fobofou SAT, Rohde M, Spröer C, Bunk B, Overmann J.

Int J Syst Evol Microbiol. 2020 Jan 20. doi: 10.1099/ijsem.0.003983. [Epub ahead of print]

PMID:
31958043
3.

Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology.

Wiegand S, Jogler M, Boedeker C, Pinto D, Vollmers J, Rivas-Marín E, Kohn T, Peeters SH, Heuer A, Rast P, Oberbeckmann S, Bunk B, Jeske O, Meyerdierks A, Storesund JE, Kallscheuer N, Lücker S, Lage OM, Pohl T, Merkel BJ, Hornburger P, Müller RW, Brümmer F, Labrenz M, Spormann AM, Op den Camp HJM, Overmann J, Amann R, Jetten MSM, Mascher T, Medema MH, Devos DP, Kaster AK, Øvreås L, Rohde M, Galperin MY, Jogler C.

Nat Microbiol. 2020 Jan;5(1):126-140. doi: 10.1038/s41564-019-0588-1. Epub 2019 Nov 18.

PMID:
31740763
4.

Complete Genome Sequence of Raoultella electrica 1GB (DSM 102253T), Isolated from Anodic Biofilms of a Glucose-Fed Microbial Fuel Cell.

Thiel S, Bunk B, Spröer C, Overmann J, Jahn D, Biedendieck R.

Microbiol Resour Announc. 2019 Oct 24;8(43). pii: e00800-19. doi: 10.1128/MRA.00800-19.

5.

Production of a Dibrominated Aromatic Secondary Metabolite by a Planctomycete Implies Complex Interaction with a Macroalgal Host.

Panter F, Garcia R, Thewes A, Zaburannyi N, Bunk B, Overmann J, Gutierrez MV, Krug D, Müller R.

ACS Chem Biol. 2019 Dec 20;14(12):2713-2719. doi: 10.1021/acschembio.9b00641. Epub 2019 Nov 1.

PMID:
31644258
6.

Amphibian skin-associated Pigmentiphaga: Genome sequence and occurrence across geography and hosts.

Bletz MC, Bunk B, Spröer C, Biwer P, Reiter S, Rabemananjara FCE, Schulz S, Overmann J, Vences M.

PLoS One. 2019 Oct 11;14(10):e0223747. doi: 10.1371/journal.pone.0223747. eCollection 2019.

7.

Complete Genome Sequence of the Plant Growth-Promoting Bacterium Hartmannibacter diazotrophicus Strain E19T.

Suarez C, Ratering S, Hain T, Fritzenwanker M, Goesmann A, Blom J, Chakraborty T, Bunk B, Spröer C, Overmann J, Schnell S.

Int J Genomics. 2019 Sep 9;2019:7586430. doi: 10.1155/2019/7586430. eCollection 2019.

8.

Trophic networks improve the performance of microbial anodes treating wastewater.

Koch C, Huber KJ, Bunk B, Overmann J, Harnisch F.

NPJ Biofilms Microbiomes. 2019 Sep 27;5:27. doi: 10.1038/s41522-019-0100-y. eCollection 2019.

9.

The functional repertoire contained within the native microbiota of the model nematode Caenorhabditis elegans.

Zimmermann J, Obeng N, Yang W, Pees B, Petersen C, Waschina S, Kissoyan KA, Aidley J, Hoeppner MP, Bunk B, Spröer C, Leippe M, Dierking K, Kaleta C, Schulenburg H.

ISME J. 2020 Jan;14(1):26-38. doi: 10.1038/s41396-019-0504-y. Epub 2019 Sep 4.

10.

Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics.

Nelkner J, Tejerizo GT, Hassa J, Lin TW, Witte J, Verwaaijen B, Winkler A, Bunk B, Spröer C, Overmann J, Grosch R, Pühler A, Schlüter AA.

Genes (Basel). 2019 Aug 9;10(8). pii: E601. doi: 10.3390/genes10080601.

11.

Next Generation DNA-Seq and Differential RNA-Seq Allow Re-annotation of the Pyrococcus furiosus DSM 3638 Genome and Provide Insights Into Archaeal Antisense Transcription.

Grünberger F, Reichelt R, Bunk B, Spröer C, Overmann J, Rachel R, Grohmann D, Hausner W.

Front Microbiol. 2019 Jul 12;10:1603. doi: 10.3389/fmicb.2019.01603. eCollection 2019.

12.

A Novel Group of Rhizobium tumorigenes-Like Agrobacteria Associated with Crown Gall Disease of Rhododendron and Blueberry.

Kuzmanović N, Behrens P, Idczak E, Wagner S, Götz M, Spröer C, Bunk B, Overmann J, Smalla K.

Phytopathology. 2019 Nov;109(11):1840-1848. doi: 10.1094/PHYTO-05-19-0167-R. Epub 2019 Oct 2.

PMID:
31294681
13.

Inactivation of farR Causes High Rhodomyrtone Resistance and Increased Pathogenicity in Staphylococcus aureus.

Nguyen MT, Saising J, Tribelli PM, Nega M, Diene SM, François P, Schrenzel J, Spröer C, Bunk B, Ebner P, Hertlein T, Kumari N, Härtner T, Wistuba D, Voravuthikunchai SP, Mäder U, Ohlsen K, Götz F.

Front Microbiol. 2019 May 28;10:1157. doi: 10.3389/fmicb.2019.01157. eCollection 2019.

14.

Comparison of VITEK 2, MALDI-TOF MS, 16S rRNA gene sequencing, and whole-genome sequencing for identification of Roseomonas mucosa.

Rudolph WW, Gunzer F, Trauth M, Bunk B, Bigge R, Schröttner P.

Microb Pathog. 2019 Sep;134:103576. doi: 10.1016/j.micpath.2019.103576. Epub 2019 Jun 8.

PMID:
31185244
15.

Corrigendum: Fuerstia marisgermanicae gen. nov., sp. nov., an Unusual Member of the Phylum Planctomycetes From the German Wadden Sea.

Kohn T, Heuer A, Jogler M, Vollmers J, Boedeker C, Bunk B, Rast P, Borchert D, Glöckner I, Freese HM, Klenk HP, Overmann J, Kaster AK, Rohde M, Wiegand S, Jogler C.

Front Microbiol. 2019 May 15;10:1029. doi: 10.3389/fmicb.2019.01029. eCollection 2019.

16.

Leucobacter muris sp. nov., isolated from the nose of a laboratory mouse.

Benga L, Spröer C, Schumann P, Verbarg S, Bunk B, Engelhardt E, Benten WPM, Sager M.

Int J Syst Evol Microbiol. 2019 Jul;69(7):2095-2100. doi: 10.1099/ijsem.0.003446. Epub 2019 May 17.

PMID:
31099739
17.

Detection of Robinsoniella peoriensis in multiple bone samples of a trauma patient.

Schröttner P, Hartwich K, Bunk B, Schober I, Helbig S, Rudolph WW, Gunzer F.

Anaerobe. 2019 Oct;59:14-18. doi: 10.1016/j.anaerobe.2019.05.001. Epub 2019 May 7.

PMID:
31075311
18.

Isolation, characterization and analysis of bacteriophages from the haloalkaline lake Elmenteita, Kenya.

Akhwale JK, Rohde M, Rohde C, Bunk B, Spröer C, Boga HI, Klenk HP, Wittmann J.

PLoS One. 2019 Apr 25;14(4):e0215734. doi: 10.1371/journal.pone.0215734. eCollection 2019.

19.

Comparative Transcriptomic Profiling of Yersinia enterocolitica O:3 and O:8 Reveals Major Expression Differences of Fitness- and Virulence-Relevant Genes Indicating Ecological Separation.

Schmühl C, Beckstette M, Heroven AK, Bunk B, Spröer C, McNally A, Overmann J, Dersch P.

mSystems. 2019 Apr 23;4(2). pii: e00239-18. doi: 10.1128/mSystems.00239-18. eCollection 2019 Mar-Apr.

20.

Genomic and transcriptomic characterization of Pseudomonas aeruginosa small colony variants derived from a chronic infection model.

Irvine S, Bunk B, Bayes HK, Spröer C, Connolly JPR, Six A, Evans TJ, Roe AJ, Overmann J, Walker D.

Microb Genom. 2019 Apr;5(4). doi: 10.1099/mgen.0.000262. Epub 2019 Mar 28.

21.

Complete Genome Sequence of the Silicimonas algicola Type Strain, a Representative of the Marine Roseobacter Group Isolated from the Cell Surface of the Marine Diatom Thalassiosira delicatula.

Crenn K, Bunk B, Spröer C, Overmann J, Jeanthon C.

Microbiol Resour Announc. 2019 Feb 28;8(9). pii: e00108-19. doi: 10.1128/MRA.00108-19. eCollection 2019 Feb.

22.

Comparative genomic analysis of eight novel haloalkaliphilic bacteriophages from Lake Elmenteita, Kenya.

Akhwale JK, Rohde M, Rohde C, Bunk B, Spröer C, Klenk HP, Boga HI, Wittmann J.

PLoS One. 2019 Feb 14;14(2):e0212102. doi: 10.1371/journal.pone.0212102. eCollection 2019.

23.

Cobaviruses - a new globally distributed phage group infecting Rhodobacteraceae in marine ecosystems.

Bischoff V, Bunk B, Meier-Kolthoff JP, Spröer C, Poehlein A, Dogs M, Nguyen M, Petersen J, Daniel R, Overmann J, Göker M, Simon M, Brinkhoff T, Moraru C.

ISME J. 2019 Jun;13(6):1404-1421. doi: 10.1038/s41396-019-0362-7. Epub 2019 Feb 4.

24.

Genomic analysis of three Clostridioides difficile isolates from urban water sources.

Numberger D, Riedel T, McEwen G, Nübel U, Frentrup M, Schober I, Bunk B, Spröer C, Overmann J, Grossart HP, Greenwood AD.

Anaerobe. 2019 Apr;56:22-26. doi: 10.1016/j.anaerobe.2019.01.002. Epub 2019 Jan 8.

PMID:
30633971
25.

Divergent evolution in the genomes of closely related lacertids, Lacerta viridis and L. bilineata, and implications for speciation.

Kolora SRR, Weigert A, Saffari A, Kehr S, Walter Costa MB, Spröer C, Indrischek H, Chintalapati M, Lohse K, Doose G, Overmann J, Bunk B, Bleidorn C, Grimm-Seyfarth A, Henle K, Nowick K, Faria R, Stadler PF, Schlegel M.

Gigascience. 2019 Feb 1;8(2). pii: giy160. doi: 10.1093/gigascience/giy160.

26.

Kyrpidia spormannii sp. nov., a thermophilic, hydrogen-oxidizing, facultative autotroph, isolated from hydrothermal systems at São Miguel Island, and emended description of the genus Kyrpidia.

Reiner JE, Jung T, Lapp CJ, Siedler M, Bunk B, Overmann J, Gescher J.

Int J Syst Evol Microbiol. 2018 Dec;68(12):3735-3740. doi: 10.1099/ijsem.0.003037. Epub 2018 Sep 20.

PMID:
30234478
27.

Comparative Genomics Reveal a Flagellar System, a Type VI Secretion System and Plant Growth-Promoting Gene Clusters Unique to the Endophytic Bacterium Kosakonia radicincitans.

Becker M, Patz S, Becker Y, Berger B, Drungowski M, Bunk B, Overmann J, Spröer C, Reetz J, Tchuisseu Tchakounte GV, Ruppel S.

Front Microbiol. 2018 Aug 30;9:1997. doi: 10.3389/fmicb.2018.01997. eCollection 2018.

28.

Long-read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environments.

Heeger F, Bourne EC, Baschien C, Yurkov A, Bunk B, Spröer C, Overmann J, Mazzoni CJ, Monaghan MT.

Mol Ecol Resour. 2018 Nov;18(6):1500-1514. doi: 10.1111/1755-0998.12937. Epub 2018 Sep 23.

PMID:
30106226
29.

Genetic Adaptation of a Mevalonate Pathway Deficient Mutant in Staphylococcus aureus.

Reichert S, Ebner P, Bonetti EJ, Luqman A, Nega M, Schrenzel J, Spröer C, Bunk B, Overmann J, Sass P, François P, Götz F.

Front Microbiol. 2018 Jul 12;9:1539. doi: 10.3389/fmicb.2018.01539. eCollection 2018.

30.

The complete genome sequence of Rhodobaca barguzinensis alga05 (DSM 19920) documents its adaptation for life in soda lakes.

Kopejtka K, Tomasch J, Bunk B, Spröer C, Wagner-Döbler I, Koblížek M.

Extremophiles. 2018 Nov;22(6):839-849. doi: 10.1007/s00792-018-1041-8. Epub 2018 Jul 18.

PMID:
30022245
31.

Convergent Loss of ABC Transporter Genes From Clostridioides difficile Genomes Is Associated With Impaired Tyrosine Uptake and p-Cresol Production.

Steglich M, Hofmann JD, Helmecke J, Sikorski J, Spröer C, Riedel T, Bunk B, Overmann J, Neumann-Schaal M, Nübel U.

Front Microbiol. 2018 May 8;9:901. doi: 10.3389/fmicb.2018.00901. eCollection 2018.

32.

Whole-genome comparison of high and low virulent Staphylococcus aureus isolates inducing implant-associated bone infections.

Mannala GK, Koettnitz J, Mohamed W, Sommer U, Lips KS, Spröer C, Bunk B, Overmann J, Hain T, Heiss C, Domann E, Alt V.

Int J Med Microbiol. 2018 Jul;308(5):505-513. doi: 10.1016/j.ijmm.2018.04.005. Epub 2018 Apr 25.

PMID:
29739668
33.

The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species.

Wu L, McCluskey K, Desmeth P, Liu S, Hideaki S, Yin Y, Moriya O, Itoh T, Kim CY, Lee JS, Zhou Y, Kawasaki H, Hazbón MH, Robert V, Boekhout T, Lima N, Evtushenko L, Boundy-Mills K, Bunk B, Moore ERB, Eurwilaichitr L, Ingsriswang S, Shah H, Yao S, Jin T, Huang J, Shi W, Sun Q, Fan G, Li W, Li X, Kurtböke I, Ma J.

Gigascience. 2018 May 1;7(5). doi: 10.1093/gigascience/giy026.

34.

Genome biology of a novel lineage of planctomycetes widespread in anoxic aquatic environments.

Spring S, Bunk B, Spröer C, Rohde M, Klenk HP.

Environ Microbiol. 2018 Jul;20(7):2438-2455. doi: 10.1111/1462-2920.14253. Epub 2018 Jul 26.

PMID:
29697183
35.

Whole-genome sequencing of a large collection of Myroides odoratimimus and Myroides odoratus isolates and antimicrobial susceptibility studies.

Gunzer F, Rudolph WW, Bunk B, Schober I, Peters S, Müller T, Oberheitmann B, Schröttner P.

Emerg Microbes Infect. 2018 Apr 4;7(1):61. doi: 10.1038/s41426-018-0061-x.

36.

Enterobacter bugandensis: a novel enterobacterial species associated with severe clinical infection.

Pati NB, Doijad SP, Schultze T, Mannala GK, Yao Y, Jaiswal S, Ryan D, Suar M, Gwozdzinski K, Bunk B, Mraheil MA, Marahiel MA, Hegemann JD, Spröer C, Goesmann A, Falgenhauer L, Hain T, Imirzalioglu C, Mshana SE, Overmann J, Chakraborty T.

Sci Rep. 2018 Mar 29;8(1):5392. doi: 10.1038/s41598-018-23069-z.

37.

Synchronous termination of replication of the two chromosomes is an evolutionary selected feature in Vibrionaceae.

Kemter FS, Messerschmidt SJ, Schallopp N, Sobetzko P, Lang E, Bunk B, Spröer C, Teschler JK, Yildiz FH, Overmann J, Waldminghaus T.

PLoS Genet. 2018 Mar 5;14(3):e1007251. doi: 10.1371/journal.pgen.1007251. eCollection 2018 Mar.

38.

Complete Genome Sequence of Kyrpidia sp. Strain EA-1, a Thermophilic Knallgas Bacterium, Isolated from the Azores.

Reiner JE, Lapp CJ, Bunk B, Spröer C, Overmann J, Gescher J.

Genome Announc. 2018 Jan 18;6(3). pii: e01505-17. doi: 10.1128/genomeA.01505-17.

39.

Host Specificity for Bacterial, Archaeal and Fungal Communities Determined for High- and Low-Microbial Abundance Sponge Species in Two Genera.

Chaib De Mares M, Sipkema D, Huang S, Bunk B, Overmann J, van Elsas JD.

Front Microbiol. 2017 Dec 20;8:2560. doi: 10.3389/fmicb.2017.02560. eCollection 2017.

40.

Packaging of Dinoroseobacter shibae DNA into Gene Transfer Agent Particles Is Not Random.

Tomasch J, Wang H, Hall ATK, Patzelt D, Preusse M, Petersen J, Brinkmann H, Bunk B, Bhuju S, Jarek M, Geffers R, Lang AS, Wagner-Döbler I.

Genome Biol Evol. 2018 Jan 1;10(1):359-369. doi: 10.1093/gbe/evy005.

41.

Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile.

Groß U, Brzuszkiewicz E, Gunka K, Starke J, Riedel T, Bunk B, Spröer C, Wetzel D, Poehlein A, Chibani C, Bohne W, Overmann J, Zimmermann O, Daniel R, Liesegang H.

BMC Genomics. 2018 Jan 2;19(1):1. doi: 10.1186/s12864-017-4368-0.

42.

Trajectories and Drivers of Genome Evolution in Surface-Associated Marine Phaeobacter.

Freese HM, Sikorski J, Bunk B, Scheuner C, Meier-Kolthoff JP, Spröer C, Gram L, Overmann J.

Genome Biol Evol. 2017 Dec 1;9(12):3297-3311. doi: 10.1093/gbe/evx249.

43.

Monitoring microevolution of OXA-48-producing Klebsiella pneumoniae ST147 in a hospital setting by SMRT sequencing.

Zautner AE, Bunk B, Pfeifer Y, Spröer C, Reichard U, Eiffert H, Scheithauer S, Groß U, Overmann J, Bohne W.

J Antimicrob Chemother. 2017 Oct 1;72(10):2737-2744. doi: 10.1093/jac/dkx216.

PMID:
29091199
44.

Genome and Methylome Variation in Helicobacter pylori With a cag Pathogenicity Island During Early Stages of Human Infection.

Nell S, Estibariz I, Krebes J, Bunk B, Graham DY, Overmann J, Song Y, Spröer C, Yang I, Wex T, Korlach J, Malfertheiner P, Suerbaum S.

Gastroenterology. 2018 Feb;154(3):612-623.e7. doi: 10.1053/j.gastro.2017.10.014. Epub 2017 Oct 21.

PMID:
29066327
45.

High-Quality Whole-Genome Sequences of the Oligo-Mouse-Microbiota Bacterial Community.

Garzetti D, Brugiroux S, Bunk B, Pukall R, McCoy KD, Macpherson AJ, Stecher B.

Genome Announc. 2017 Oct 19;5(42). pii: e00758-17. doi: 10.1128/genomeA.00758-17.

46.

The Composite 259-kb Plasmid of Martelella mediterranea DSM 17316T-A Natural Replicon with Functional RepABC Modules from Rhodobacteraceae and Rhizobiaceae.

Bartling P, Brinkmann H, Bunk B, Overmann J, Göker M, Petersen J.

Front Microbiol. 2017 Sep 21;8:1787. doi: 10.3389/fmicb.2017.01787. eCollection 2017.

47.

The Biofilm Inhibitor Carolacton Enters Gram-Negative Cells: Studies Using a TolC-Deficient Strain of Escherichia coli.

Donner J, Reck M, Bunk B, Jarek M, App CB, Meier-Kolthoff JP, Overmann J, Müller R, Kirschning A, Wagner-Döbler I.

mSphere. 2017 Sep 27;2(5). pii: e00375-17. doi: 10.1128/mSphereDirect.00375-17. eCollection 2017 Sep-Oct.

48.

Complete genome sequence of the nematicidal Bacillus thuringiensis MYBT18247.

Hollensteiner J, Poehlein A, Spröer C, Bunk B, Sheppard AE, Rosenstiel P, Schulenburg H, Liesegang H.

J Biotechnol. 2017 Oct 20;260:48-52. doi: 10.1016/j.jbiotec.2017.09.003. Epub 2017 Sep 9.

49.

Complete Genome sequence of the nematicidal Bacillus thuringiensis MYBT18246.

Hollensteiner J, Poehlein A, Spröer C, Bunk B, Sheppard AE, Rosentstiel P, Schulenburg H, Liesegang H.

Stand Genomic Sci. 2017 Aug 24;12:48. doi: 10.1186/s40793-017-0259-x. eCollection 2017.

50.

Complete Genome Sequence of blaCTX-M-27-Encoding Escherichia coli Strain H105 of Sequence Type 131 Lineage C1/H30R.

Ghosh H, Bunk B, Doijad S, Schmiedel J, Falgenhauer L, Spröer C, Imirzalioglu C, Overmann J, Chakraborty T.

Genome Announc. 2017 Aug 3;5(31). pii: e00736-17. doi: 10.1128/genomeA.00736-17.

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