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Environmental DNA (eDNA) metabarcoding reveals strong discrimination among diverse marine habitats connected by water movement.

Jeunen GJ, Knapp M, Spencer HG, Lamare MD, Taylor HR, Stat M, Bunce M, Gemmell NJ.

Mol Ecol Resour. 2018 Dec 21. doi: 10.1111/1755-0998.12982. [Epub ahead of print]


MobiSeq: De Novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements.

Rey-Iglesia A, Gopalakrishan S, Carøe C, Alquezar-Planas DE, Ahlmann Nielsen A, Röder T, Bruhn Pedersen L, Naesborg-Nielsen C, Sinding MS, Fredensborg Rath M, Li Z, Petersen B, Gilbert MTP, Bunce M, Mourier T, Hansen AJ.

Mol Ecol Resour. 2018 Dec 21. doi: 10.1111/1755-0998.12984. [Epub ahead of print]


Using the Healthy Days Measure to Assess Factors Associated with Poor Health-Related Quality of Life for Patients with Metastatic Breast, Lung, or Colorectal Cancer Enrolled in a Medicare Advantage Health Plan.

Casebeer AW, Antol DD, Hopson S, Khoury R, Renda A, Parikh A, Stein A, Michael T, Stemkowski S, Bunce M.

Popul Health Manag. 2018 Dec 18. doi: 10.1089/pop.2018.0024. [Epub ahead of print]


Environmental DNA metabarcoding studies are critically affected by substrate selection.

Koziol A, Stat M, Simpson T, Jarman S, DiBattista JD, Harvey ES, Marnane M, McDonald J, Bunce M.

Mol Ecol Resour. 2018 Nov 28. doi: 10.1111/1755-0998.12971. [Epub ahead of print]


The relationship between comorbidity medication adherence and health related quality of life among patients with cancer.

Drzayich Antol D, Waldman Casebeer A, Khoury R, Michael T, Renda A, Hopson S, Parikh A, Stein A, Costantino M, Stemkowski S, Bunce M.

J Patient Rep Outcomes. 2018 Jul 4;2:29. doi: 10.1186/s41687-018-0057-2. eCollection 2018 Dec.


The Microbiome of the Gastrointestinal Tract of a Range-Shifting Marine Herbivorous Fish.

Jones J, DiBattista JD, Stat M, Bunce M, Boyce MC, Fairclough DV, Travers MJ, Huggett MJ.

Front Microbiol. 2018 Aug 28;9:2000. doi: 10.3389/fmicb.2018.02000. eCollection 2018.


Combined use of eDNA metabarcoding and video surveillance for the assessment of fish biodiversity.

Stat M, John J, DiBattista JD, Newman SJ, Bunce M, Harvey ES.

Conserv Biol. 2019 Feb;33(1):196-205. doi: 10.1111/cobi.13183. Epub 2018 Sep 12.


Subsistence practices, past biodiversity, and anthropogenic impacts revealed by New Zealand-wide ancient DNA survey.

Seersholm FV, Cole TL, Grealy A, Rawlence NJ, Greig K, Knapp M, Stat M, Hansen AJ, Easton LJ, Shepherd L, Tennyson AJD, Scofield RP, Walter R, Bunce M.

Proc Natl Acad Sci U S A. 2018 Jul 24;115(30):7771-7776. doi: 10.1073/pnas.1803573115. Epub 2018 Jul 9.


The value of environmental DNA biobanking for long-term biomonitoring.

Jarman SN, Berry O, Bunce M.

Nat Ecol Evol. 2018 Aug;2(8):1192-1193. doi: 10.1038/s41559-018-0614-3. No abstract available.


Debugging diversity - a pan-continental exploration of the potential of terrestrial blood-feeding leeches as a vertebrate monitoring tool.

Schnell IB, Bohmann K, Schultze SE, Richter SR, Murray DC, Sinding MS, Bass D, Cadle JE, Campbell MJ, Dolch R, Edwards DP, Gray TNE, Hansen T, Hoa ANQ, Noer CL, Heise-Pavlov S, Sander Pedersen AF, Ramamonjisoa JC, Siddall ME, Tilker A, Traeholt C, Wilkinson N, Woodcock P, Yu DW, Bertelsen MF, Bunce M, Gilbert MTP.

Mol Ecol Resour. 2018 Nov;18(6):1282-1298. doi: 10.1111/1755-0998.12912. Epub 2018 Jul 5.


The Relationship Between Guideline-Recommended Initiation of Therapy, Outcomes, and Cost for Patients with Metastatic Non-Small Cell Lung Cancer.

Casebeer A, Antol DD, DeClue RW, Hopson S, Li Y, Khoury R, Michael T, Sehman M, Parikh A, Stemkowski S, Bunce M.

J Manag Care Spec Pharm. 2018 Jun;24(6):554-564. doi: 10.18553/jmcp.2018.24.6.554.


The influence of diet and environment on the gut microbial community of field crickets.

Ng SH, Stat M, Bunce M, Simmons LW.

Ecol Evol. 2018 Apr 16;8(9):4704-4720. doi: 10.1002/ece3.3977. eCollection 2018 May.


Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat.

Zepeda Mendoza ML, Xiong Z, Escalera-Zamudio M, Runge AK, Thézé J, Streicker D, Frank HK, Loza-Rubio E, Liu S, Ryder OA, Samaniego Castruita JA, Katzourakis A, Pacheco G, Taboada B, Löber U, Pybus OG, Li Y, Rojas-Anaya E, Bohmann K, Carmona Baez A, Arias CF, Liu S, Greenwood AD, Bertelsen MF, White NE, Bunce M, Zhang G, Sicheritz-Pontén T, Gilbert MPT.

Nat Ecol Evol. 2018 Apr;2(4):659-668. doi: 10.1038/s41559-018-0476-8. Epub 2018 Feb 19.


Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment.

Stat M, Huggett MJ, Bernasconi R, DiBattista JD, Berry TE, Newman SJ, Harvey ES, Bunce M.

Sci Rep. 2017 Sep 25;7(1):12240. doi: 10.1038/s41598-017-12501-5.


Interaction of factor V B-domain acidic region with its basic region and with TFPI/TFPI2: Structural insights from molecular modeling studies.

Vadivel K, Kumar Y, Bunce MW, Camire RM, Bajaj MS, Bajaj SP.

Int Biol Rev. 2017 May;1(1). pii:


DNA metabarcoding for diet analysis and biodiversity: A case study using the endangered Australian sea lion (Neophoca cinerea).

Berry TE, Osterrieder SK, Murray DC, Coghlan ML, Richardson AJ, Grealy AK, Stat M, Bejder L, Bunce M.

Ecol Evol. 2017 Jun 12;7(14):5435-5453. doi: 10.1002/ece3.3123. eCollection 2017 Jul.


What risks do herbal products pose to the Australian community?

Byard RW, Maker G, Bunce M.

Med J Aust. 2017 Aug 7;207(3):134. No abstract available.


Time to Spread Your Wings: A Review of the Avian Ancient DNA Field.

Grealy A, Rawlence NJ, Bunce M.

Genes (Basel). 2017 Jul 18;8(7). pii: E184. doi: 10.3390/genes8070184. Review.


Efficient Generation of Bispecific Murine Antibodies for Pre-Clinical Investigations in Syngeneic Rodent Models.

Labrijn AF, Meesters JI, Bunce M, Armstrong AA, Somani S, Nesspor TC, Chiu ML, Altintaş I, Verploegen S, Schuurman J, Parren PWHI.

Sci Rep. 2017 May 30;7(1):2476. doi: 10.1038/s41598-017-02823-9.


Tools for Communication: Novel infrastructure to address patient-perceived gaps in oncology care

McMullen S, Szabo S, Halbert RJ, Lai C, Parikh A, Bunce M, Khoury R, Small A, Masaquel A.

Clin J Oncol Nurs. 2017 Apr 1;21(2):E38-E48. doi: 10.1188/17.CJON.E38-E48.


What risks do herbal products pose to the Australian community?

Byard RW, Musgrave I, Maker G, Bunce M.

Med J Aust. 2017 Feb 6;206(2):86-90. Review.


Eggshell palaeogenomics: Palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp.) eggshell.

Grealy A, Phillips M, Miller G, Gilbert MTP, Rouillard JM, Lambert D, Bunce M, Haile J.

Mol Phylogenet Evol. 2017 Apr;109:151-163. doi: 10.1016/j.ympev.2017.01.005. Epub 2017 Jan 9.


The application of metabolomics for herbal medicine pharmacovigilance: a case study on ginseng.

Crighton E, Mullaney I, Trengove R, Bunce M, Maker G.

Essays Biochem. 2016 Dec 15;60(5):429-435. Review.


Radiology as the Point of Cancer Patient and Care Team Engagement: Applying the 4R Model at a Patient's Breast Cancer Care Initiation.

Weldon CB, Friedewald SM, Kulkarni SA, Simon MA, Carlos RC, Strauss JB, Bunce MM, Small A, Trosman JR.

J Am Coll Radiol. 2016 Dec;13(12 Pt B):1579-1589. doi: 10.1016/j.jacr.2016.09.008.


Care for a Patient With Cancer As a Project: Management of Complex Task Interdependence in Cancer Care Delivery.

Trosman JR, Carlos RC, Simon MA, Madden DL, Gradishar WJ, Benson AB 3rd, Rapkin BD, Weiss ES, Gareen IF, Wagner LI, Khan SA, Bunce MM, Small A, Weldon CB.

J Oncol Pract. 2016 Nov;12(11):1101-1113. Epub 2016 Oct 31.


High diversity of picornaviruses in rats from different continents revealed by deep sequencing.

Hansen TA, Mollerup S, Nguyen NP, White NE, Coghlan M, Alquezar-Planas DE, Joshi T, Jensen RH, Fridholm H, Kjartansdóttir KR, Mourier T, Warnow T, Belsham GJ, Bunce M, Willerslev E, Nielsen LP, Vinner L, Hansen AJ.

Emerg Microbes Infect. 2016 Aug 17;5(8):e90. doi: 10.1038/emi.2016.90.


Changes in ectomycorrhizal fungal community composition and declining diversity along a 2-million-year soil chronosequence.

Albornoz FE, Teste FP, Lambers H, Bunce M, Murray DC, White NE, Laliberté E.

Mol Ecol. 2016 Oct;25(19):4919-29. doi: 10.1111/mec.13778. Epub 2016 Aug 26.


Pollutant emissions and environmental assessment of ethyl 3-ethoxybutyrate, a potential renewable fuel.

Storey JM, Bunce MP, Clarke EM, Edmonds JW, Findlay RH, Ritchie SM, Eyers L, McMurry ZA, Smoot JC.

Environ Sci Pollut Res Int. 2016 Sep;23(18):18575-84. doi: 10.1007/s11356-016-7052-z. Epub 2016 Jun 14.


Factors in Patient Empowerment: A Survey of an Online Patient Research Network.

Chiauzzi E, DasMahapatra P, Cochin E, Bunce M, Khoury R, Dave P.

Patient. 2016 Dec;9(6):511-523.


Combined DNA, toxicological and heavy metal analyses provides an auditing toolkit to improve pharmacovigilance of traditional Chinese medicine (TCM).

Coghlan ML, Maker G, Crighton E, Haile J, Murray DC, White NE, Byard RW, Bellgard MI, Mullaney I, Trengove R, Allcock RJ, Nash C, Hoban C, Jarrett K, Edwards R, Musgrave IF, Bunce M.

Sci Rep. 2015 Dec 10;5:17475. doi: 10.1038/srep17475.


Genetic diversity loss in a biodiversity hotspot: ancient DNA quantifies genetic decline and former connectivity in a critically endangered marsupial.

Pacioni C, Hunt H, Allentoft ME, Vaughan TG, Wayne AF, Baynes A, Haouchar D, Dortch J, Bunce M.

Mol Ecol. 2015 Dec;24(23):5813-28. doi: 10.1111/mec.13430. Epub 2015 Nov 24.


The rise and fall of arbuscular mycorrhizal fungal diversity during ecosystem retrogression.

Krüger M, Teste FP, Laliberté E, Lambers H, Coghlan M, Zemunik G, Bunce M.

Mol Ecol. 2015 Oct;24(19):4912-30. doi: 10.1111/mec.13363.


Inhibition of the endosymbiont "Candidatus Midichloria mitochondrii" during 16S rRNA gene profiling reveals potential pathogens in Ixodes ticks from Australia.

Gofton AW, Oskam CL, Lo N, Beninati T, Wei H, McCarl V, Murray DC, Paparini A, Greay TL, Holmes AJ, Bunce M, Ryan U, Irwin P.

Parasit Vectors. 2015 Jun 25;8:345. doi: 10.1186/s13071-015-0958-3.


Ancient DNA microsatellite analyses of the extinct New Zealand giant moa (Dinornis robustus) identify relatives within a single fossil site.

Allentoft ME, Heller R, Holdaway RN, Bunce M.

Heredity (Edinb). 2015 Dec;115(6):481-7. doi: 10.1038/hdy.2015.48. Epub 2015 Jun 3.


From benchtop to desktop: important considerations when designing amplicon sequencing workflows.

Murray DC, Coghlan ML, Bunce M.

PLoS One. 2015 Apr 22;10(4):e0124671. doi: 10.1371/journal.pone.0124671. eCollection 2015.


Comparison of Sanger and next generation sequencing performance for genotyping Cryptosporidium isolates at the 18S rRNA and actin loci.

Paparini A, Gofton A, Yang R, White N, Bunce M, Ryan UM.

Exp Parasitol. 2015 Apr-May;151-152:21-7. doi: 10.1016/j.exppara.2015.02.001. Epub 2015 Feb 3.


Metagenomic analyses of bacteria on human hairs: a qualitative assessment for applications in forensic science.

Tridico SR, Murray DC, Addison J, Kirkbride KP, Bunce M.

Investig Genet. 2014 Dec 16;5(1):16. doi: 10.1186/s13323-014-0016-5. eCollection 2014.


Whole-genome analyses resolve early branches in the tree of life of modern birds.

Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G.

Science. 2014 Dec 12;346(6215):1320-31. doi: 10.1126/science.1253451.


An extremely low-density human population exterminated New Zealand moa.

Holdaway RN, Allentoft ME, Jacomb C, Oskam CL, Beavan NR, Bunce M.

Nat Commun. 2014 Nov 7;5:5436. doi: 10.1038/ncomms6436.


Interpreting biological degradative processes acting on mammalian hair in the living and the dead: which ones are taphonomic?

Tridico SR, Koch S, Michaud A, Thomson G, Kirkbride KP, Bunce M.

Proc Biol Sci. 2014 Dec 7;281(1796):20141755. doi: 10.1098/rspb.2014.1755.


Platelets contain tissue factor pathway inhibitor-2 derived from megakaryocytes and inhibits fibrinolysis.

Vadivel K, Ponnuraj SM, Kumar Y, Zaiss AK, Bunce MW, Camire RM, Wu L, Evseenko D, Herschman HR, Bajaj MS, Bajaj SP.

J Biol Chem. 2014 Nov 7;289(45):31647-61. doi: 10.1074/jbc.M114.569665. Epub 2014 Sep 28.


Extinct New Zealand megafauna were not in decline before human colonization.

Allentoft ME, Heller R, Oskam CL, Lorenzen ED, Hale ML, Gilbert MT, Jacomb C, Holdaway RN, Bunce M.

Proc Natl Acad Sci U S A. 2014 Apr 1;111(13):4922-7. doi: 10.1073/pnas.1314972111. Epub 2014 Mar 17.


DNA sequencing and metabolomics: new approaches to the forensic assessment of herbal therapeutic agents.

Byard RW, Musgrave I, Hoban C, Bunce M.

Forensic Sci Med Pathol. 2015 Mar;11(1):1-2. doi: 10.1007/s12024-014-9537-8. Epub 2014 Feb 11. No abstract available.


Metabarcoding avian diets at airports: implications for birdstrike hazard management planning.

Coghlan ML, White NE, Murray DC, Houston J, Rutherford W, Bellgard MI, Haile J, Bunce M.

Investig Genet. 2013 Dec 11;4(1):27. doi: 10.1186/2041-2223-4-27.


Scrapheap challenge: a novel bulk-bone metabarcoding method to investigate ancient DNA in faunal assemblages.

Murray DC, Haile J, Dortch J, White NE, Haouchar D, Bellgard MI, Allcock RJ, Prideaux GJ, Bunce M.

Sci Rep. 2013 Nov 28;3:3371. doi: 10.1038/srep03371.


Tissue factor pathway inhibitor-alpha inhibits prothrombinase during the initiation of blood coagulation.

Wood JP, Bunce MW, Maroney SA, Tracy PB, Camire RM, Mast AE.

Proc Natl Acad Sci U S A. 2013 Oct 29;110(44):17838-43. doi: 10.1073/pnas.1310444110. Epub 2013 Oct 14.


Who's for dinner? High-throughput sequencing reveals bat dietary differentiation in a biodiversity hotspot where prey taxonomy is largely undescribed.

Burgar JM, Murray DC, Craig MD, Haile J, Houston J, Stokes V, Bunce M.

Mol Ecol. 2014 Aug;23(15):3605-17. doi: 10.1111/mec.12531. Epub 2013 Oct 31.


Restoring the procofactor state of factor Va-like variants by complementation with B-domain peptides.

Bunce MW, Bos MH, Krishnaswamy S, Camire RM.

J Biol Chem. 2013 Oct 18;288(42):30151-60. doi: 10.1074/jbc.M113.506840. Epub 2013 Sep 6.


Factor Xa activation of factor V is of paramount importance in initiating the coagulation system: lessons from a tick salivary protein.

Schuijt TJ, Bakhtiari K, Daffre S, Deponte K, Wielders SJ, Marquart JA, Hovius JW, van der Poll T, Fikrig E, Bunce MW, Camire RM, Nicolaes GA, Meijers JC, van 't Veer C.

Circulation. 2013 Jul 16;128(3):254-66. doi: 10.1161/CIRCULATIONAHA.113.003191. Epub 2013 Jul 1.


HLA typing by sequence-specific primers.

Bunce M, Passey B.

Methods Mol Biol. 2013;1034:147-59. doi: 10.1007/978-1-62703-493-7_8.


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