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Items: 1 to 50 of 62

1.

Environmental DNA (eDNA) metabarcoding reveals strong discrimination among diverse marine habitats connected by water movement.

Jeunen GJ, Knapp M, Spencer HG, Lamare MD, Taylor HR, Stat M, Bunce M, Gemmell NJ.

Mol Ecol Resour. 2018 Dec 21. doi: 10.1111/1755-0998.12982. [Epub ahead of print]

PMID:
30576077
2.

MobiSeq: De Novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements.

Rey-Iglesia A, Gopalakrishan S, Carøe C, Alquezar-Planas DE, Ahlmann Nielsen A, Röder T, Bruhn Pedersen L, Naesborg-Nielsen C, Sinding MS, Fredensborg Rath M, Li Z, Petersen B, Gilbert MTP, Bunce M, Mourier T, Hansen AJ.

Mol Ecol Resour. 2018 Dec 21. doi: 10.1111/1755-0998.12984. [Epub ahead of print]

PMID:
30575257
3.

Environmental DNA metabarcoding studies are critically affected by substrate selection.

Koziol A, Stat M, Simpson T, Jarman S, DiBattista JD, Harvey ES, Marnane M, McDonald J, Bunce M.

Mol Ecol Resour. 2018 Nov 28. doi: 10.1111/1755-0998.12971. [Epub ahead of print]

PMID:
30485662
4.

The Microbiome of the Gastrointestinal Tract of a Range-Shifting Marine Herbivorous Fish.

Jones J, DiBattista JD, Stat M, Bunce M, Boyce MC, Fairclough DV, Travers MJ, Huggett MJ.

Front Microbiol. 2018 Aug 28;9:2000. doi: 10.3389/fmicb.2018.02000. eCollection 2018.

5.

Combined use of eDNA metabarcoding and video surveillance for the assessment of fish biodiversity.

Stat M, John J, DiBattista JD, Newman SJ, Bunce M, Harvey ES.

Conserv Biol. 2019 Feb;33(1):196-205. doi: 10.1111/cobi.13183. Epub 2018 Sep 12.

PMID:
30004598
6.

Subsistence practices, past biodiversity, and anthropogenic impacts revealed by New Zealand-wide ancient DNA survey.

Seersholm FV, Cole TL, Grealy A, Rawlence NJ, Greig K, Knapp M, Stat M, Hansen AJ, Easton LJ, Shepherd L, Tennyson AJD, Scofield RP, Walter R, Bunce M.

Proc Natl Acad Sci U S A. 2018 Jul 24;115(30):7771-7776. doi: 10.1073/pnas.1803573115. Epub 2018 Jul 9.

7.

The value of environmental DNA biobanking for long-term biomonitoring.

Jarman SN, Berry O, Bunce M.

Nat Ecol Evol. 2018 Aug;2(8):1192-1193. doi: 10.1038/s41559-018-0614-3. No abstract available.

PMID:
29967486
8.

Debugging diversity - a pan-continental exploration of the potential of terrestrial blood-feeding leeches as a vertebrate monitoring tool.

Schnell IB, Bohmann K, Schultze SE, Richter SR, Murray DC, Sinding MS, Bass D, Cadle JE, Campbell MJ, Dolch R, Edwards DP, Gray TNE, Hansen T, Hoa ANQ, Noer CL, Heise-Pavlov S, Sander Pedersen AF, Ramamonjisoa JC, Siddall ME, Tilker A, Traeholt C, Wilkinson N, Woodcock P, Yu DW, Bertelsen MF, Bunce M, Gilbert MTP.

Mol Ecol Resour. 2018 Nov;18(6):1282-1298. doi: 10.1111/1755-0998.12912. Epub 2018 Jul 5.

PMID:
29877042
9.

The influence of diet and environment on the gut microbial community of field crickets.

Ng SH, Stat M, Bunce M, Simmons LW.

Ecol Evol. 2018 Apr 16;8(9):4704-4720. doi: 10.1002/ece3.3977. eCollection 2018 May.

10.

Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat.

Zepeda Mendoza ML, Xiong Z, Escalera-Zamudio M, Runge AK, Thézé J, Streicker D, Frank HK, Loza-Rubio E, Liu S, Ryder OA, Samaniego Castruita JA, Katzourakis A, Pacheco G, Taboada B, Löber U, Pybus OG, Li Y, Rojas-Anaya E, Bohmann K, Carmona Baez A, Arias CF, Liu S, Greenwood AD, Bertelsen MF, White NE, Bunce M, Zhang G, Sicheritz-Pontén T, Gilbert MPT.

Nat Ecol Evol. 2018 Apr;2(4):659-668. doi: 10.1038/s41559-018-0476-8. Epub 2018 Feb 19.

11.

Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment.

Stat M, Huggett MJ, Bernasconi R, DiBattista JD, Berry TE, Newman SJ, Harvey ES, Bunce M.

Sci Rep. 2017 Sep 25;7(1):12240. doi: 10.1038/s41598-017-12501-5.

12.

DNA metabarcoding for diet analysis and biodiversity: A case study using the endangered Australian sea lion (Neophoca cinerea).

Berry TE, Osterrieder SK, Murray DC, Coghlan ML, Richardson AJ, Grealy AK, Stat M, Bejder L, Bunce M.

Ecol Evol. 2017 Jun 12;7(14):5435-5453. doi: 10.1002/ece3.3123. eCollection 2017 Jul.

13.

What risks do herbal products pose to the Australian community?

Byard RW, Maker G, Bunce M.

Med J Aust. 2017 Aug 7;207(3):134. No abstract available.

PMID:
28764633
14.

Time to Spread Your Wings: A Review of the Avian Ancient DNA Field.

Grealy A, Rawlence NJ, Bunce M.

Genes (Basel). 2017 Jul 18;8(7). pii: E184. doi: 10.3390/genes8070184. Review.

15.

What risks do herbal products pose to the Australian community?

Byard RW, Musgrave I, Maker G, Bunce M.

Med J Aust. 2017 Feb 6;206(2):86-90. Review.

PMID:
28152355
16.

Eggshell palaeogenomics: Palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp.) eggshell.

Grealy A, Phillips M, Miller G, Gilbert MTP, Rouillard JM, Lambert D, Bunce M, Haile J.

Mol Phylogenet Evol. 2017 Apr;109:151-163. doi: 10.1016/j.ympev.2017.01.005. Epub 2017 Jan 9.

PMID:
28089793
17.

The application of metabolomics for herbal medicine pharmacovigilance: a case study on ginseng.

Crighton E, Mullaney I, Trengove R, Bunce M, Maker G.

Essays Biochem. 2016 Dec 15;60(5):429-435. Review.

PMID:
27980093
18.

High diversity of picornaviruses in rats from different continents revealed by deep sequencing.

Hansen TA, Mollerup S, Nguyen NP, White NE, Coghlan M, Alquezar-Planas DE, Joshi T, Jensen RH, Fridholm H, Kjartansdóttir KR, Mourier T, Warnow T, Belsham GJ, Bunce M, Willerslev E, Nielsen LP, Vinner L, Hansen AJ.

Emerg Microbes Infect. 2016 Aug 17;5(8):e90. doi: 10.1038/emi.2016.90.

19.

Changes in ectomycorrhizal fungal community composition and declining diversity along a 2-million-year soil chronosequence.

Albornoz FE, Teste FP, Lambers H, Bunce M, Murray DC, White NE, Laliberté E.

Mol Ecol. 2016 Oct;25(19):4919-29. doi: 10.1111/mec.13778. Epub 2016 Aug 26.

PMID:
27480679
20.

Pollutant emissions and environmental assessment of ethyl 3-ethoxybutyrate, a potential renewable fuel.

Storey JM, Bunce MP, Clarke EM, Edmonds JW, Findlay RH, Ritchie SM, Eyers L, McMurry ZA, Smoot JC.

Environ Sci Pollut Res Int. 2016 Sep;23(18):18575-84. doi: 10.1007/s11356-016-7052-z. Epub 2016 Jun 14.

PMID:
27296930
21.

Combined DNA, toxicological and heavy metal analyses provides an auditing toolkit to improve pharmacovigilance of traditional Chinese medicine (TCM).

Coghlan ML, Maker G, Crighton E, Haile J, Murray DC, White NE, Byard RW, Bellgard MI, Mullaney I, Trengove R, Allcock RJ, Nash C, Hoban C, Jarrett K, Edwards R, Musgrave IF, Bunce M.

Sci Rep. 2015 Dec 10;5:17475. doi: 10.1038/srep17475.

22.

Genetic diversity loss in a biodiversity hotspot: ancient DNA quantifies genetic decline and former connectivity in a critically endangered marsupial.

Pacioni C, Hunt H, Allentoft ME, Vaughan TG, Wayne AF, Baynes A, Haouchar D, Dortch J, Bunce M.

Mol Ecol. 2015 Dec;24(23):5813-28. doi: 10.1111/mec.13430. Epub 2015 Nov 24.

PMID:
26497007
23.

The rise and fall of arbuscular mycorrhizal fungal diversity during ecosystem retrogression.

Krüger M, Teste FP, Laliberté E, Lambers H, Coghlan M, Zemunik G, Bunce M.

Mol Ecol. 2015 Oct;24(19):4912-30. doi: 10.1111/mec.13363.

PMID:
26332084
24.

Inhibition of the endosymbiont "Candidatus Midichloria mitochondrii" during 16S rRNA gene profiling reveals potential pathogens in Ixodes ticks from Australia.

Gofton AW, Oskam CL, Lo N, Beninati T, Wei H, McCarl V, Murray DC, Paparini A, Greay TL, Holmes AJ, Bunce M, Ryan U, Irwin P.

Parasit Vectors. 2015 Jun 25;8:345. doi: 10.1186/s13071-015-0958-3.

25.

From benchtop to desktop: important considerations when designing amplicon sequencing workflows.

Murray DC, Coghlan ML, Bunce M.

PLoS One. 2015 Apr 22;10(4):e0124671. doi: 10.1371/journal.pone.0124671. eCollection 2015.

26.

Comparison of Sanger and next generation sequencing performance for genotyping Cryptosporidium isolates at the 18S rRNA and actin loci.

Paparini A, Gofton A, Yang R, White N, Bunce M, Ryan UM.

Exp Parasitol. 2015 Apr-May;151-152:21-7. doi: 10.1016/j.exppara.2015.02.001. Epub 2015 Feb 3.

PMID:
25662433
27.

Metagenomic analyses of bacteria on human hairs: a qualitative assessment for applications in forensic science.

Tridico SR, Murray DC, Addison J, Kirkbride KP, Bunce M.

Investig Genet. 2014 Dec 16;5(1):16. doi: 10.1186/s13323-014-0016-5. eCollection 2014.

28.

Whole-genome analyses resolve early branches in the tree of life of modern birds.

Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G.

Science. 2014 Dec 12;346(6215):1320-31. doi: 10.1126/science.1253451.

29.

An extremely low-density human population exterminated New Zealand moa.

Holdaway RN, Allentoft ME, Jacomb C, Oskam CL, Beavan NR, Bunce M.

Nat Commun. 2014 Nov 7;5:5436. doi: 10.1038/ncomms6436.

PMID:
25378020
30.

Interpreting biological degradative processes acting on mammalian hair in the living and the dead: which ones are taphonomic?

Tridico SR, Koch S, Michaud A, Thomson G, Kirkbride KP, Bunce M.

Proc Biol Sci. 2014 Dec 7;281(1796):20141755. doi: 10.1098/rspb.2014.1755.

31.

Extinct New Zealand megafauna were not in decline before human colonization.

Allentoft ME, Heller R, Oskam CL, Lorenzen ED, Hale ML, Gilbert MT, Jacomb C, Holdaway RN, Bunce M.

Proc Natl Acad Sci U S A. 2014 Apr 1;111(13):4922-7. doi: 10.1073/pnas.1314972111. Epub 2014 Mar 17.

32.

DNA sequencing and metabolomics: new approaches to the forensic assessment of herbal therapeutic agents.

Byard RW, Musgrave I, Hoban C, Bunce M.

Forensic Sci Med Pathol. 2015 Mar;11(1):1-2. doi: 10.1007/s12024-014-9537-8. Epub 2014 Feb 11. No abstract available.

PMID:
24515579
33.

Metabarcoding avian diets at airports: implications for birdstrike hazard management planning.

Coghlan ML, White NE, Murray DC, Houston J, Rutherford W, Bellgard MI, Haile J, Bunce M.

Investig Genet. 2013 Dec 11;4(1):27. doi: 10.1186/2041-2223-4-27.

34.

Scrapheap challenge: a novel bulk-bone metabarcoding method to investigate ancient DNA in faunal assemblages.

Murray DC, Haile J, Dortch J, White NE, Haouchar D, Bellgard MI, Allcock RJ, Prideaux GJ, Bunce M.

Sci Rep. 2013 Nov 28;3:3371. doi: 10.1038/srep03371.

35.

Who's for dinner? High-throughput sequencing reveals bat dietary differentiation in a biodiversity hotspot where prey taxonomy is largely undescribed.

Burgar JM, Murray DC, Craig MD, Haile J, Houston J, Stokes V, Bunce M.

Mol Ecol. 2014 Aug;23(15):3605-17. doi: 10.1111/mec.12531. Epub 2013 Oct 31.

PMID:
24118181
36.

Inferring kangaroo phylogeny from incongruent nuclear and mitochondrial genes.

Phillips MJ, Haouchar D, Pratt RC, Gibb GC, Bunce M.

PLoS One. 2013;8(2):e57745. doi: 10.1371/journal.pone.0057745. Epub 2013 Feb 22.

37.

The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils.

Allentoft ME, Collins M, Harker D, Haile J, Oskam CL, Hale ML, Campos PF, Samaniego JA, Gilbert MT, Willerslev E, Zhang G, Scofield RP, Holdaway RN, Bunce M.

Proc Biol Sci. 2012 Dec 7;279(1748):4724-33. doi: 10.1098/rspb.2012.1745. Epub 2012 Oct 10.

38.

Deep sequencing of plant and animal DNA contained within traditional Chinese medicines reveals legality issues and health safety concerns.

Coghlan ML, Haile J, Houston J, Murray DC, White NE, Moolhuijzen P, Bellgard MI, Bunce M.

PLoS Genet. 2012;8(4):e1002657. doi: 10.1371/journal.pgen.1002657. Epub 2012 Apr 12.

39.

A high prevalence of Theileria penicillata in woylies (Bettongia penicillata).

Rong J, Bunce M, Wayne A, Pacioni C, Ryan U, Irwin P.

Exp Parasitol. 2012 Jun;131(2):157-61. doi: 10.1016/j.exppara.2012.03.013. Epub 2012 Mar 23.

PMID:
22465500
40.

Quantitative real-time PCR in aDNA research.

Bunce M, Oskam CL, Allentoft ME.

Methods Mol Biol. 2012;840:121-32. doi: 10.1007/978-1-61779-516-9_16.

PMID:
22237530
41.

DNA extraction from fossil eggshell.

Oskam CL, Bunce M.

Methods Mol Biol. 2012;840:65-70. doi: 10.1007/978-1-61779-516-9_9.

PMID:
22237523
42.

Application of STR markers in wildlife forensic casework involving Australian black-cockatoos (Calyptorhynchus spp.).

White NE, Dawson R, Coghlan ML, Tridico SR, Mawson PR, Haile J, Bunce M.

Forensic Sci Int Genet. 2012 Sep;6(5):664-70. doi: 10.1016/j.fsigen.2011.10.003. Epub 2011 Nov 18.

PMID:
22101117
43.

DNA-based faecal dietary analysis: a comparison of qPCR and high throughput sequencing approaches.

Murray DC, Bunce M, Cannell BL, Oliver R, Houston J, White NE, Barrero RA, Bellgard MI, Haile J.

PLoS One. 2011;6(10):e25776. doi: 10.1371/journal.pone.0025776. Epub 2011 Oct 6.

44.

An Aboriginal Australian genome reveals separate human dispersals into Asia.

Rasmussen M, Guo X, Wang Y, Lohmueller KE, Rasmussen S, Albrechtsen A, Skotte L, Lindgreen S, Metspalu M, Jombart T, Kivisild T, Zhai W, Eriksson A, Manica A, Orlando L, De La Vega FM, Tridico S, Metspalu E, Nielsen K, Ávila-Arcos MC, Moreno-Mayar JV, Muller C, Dortch J, Gilbert MT, Lund O, Wesolowska A, Karmin M, Weinert LA, Wang B, Li J, Tai S, Xiao F, Hanihara T, van Driem G, Jha AR, Ricaut FX, de Knijff P, Migliano AB, Gallego Romero I, Kristiansen K, Lambert DM, Brunak S, Forster P, Brinkmann B, Nehlich O, Bunce M, Richards M, Gupta R, Bustamante CD, Krogh A, Foley RA, Lahr MM, Balloux F, Sicheritz-Pontén T, Villems R, Nielsen R, Wang J, Willerslev E.

Science. 2011 Oct 7;334(6052):94-8. doi: 10.1126/science.1211177. Epub 2011 Sep 22.

45.

Egg forensics: an appraisal of DNA sequencing to assist in species identification of illegally smuggled eggs.

Coghlan ML, White NE, Parkinson L, Haile J, Spencer PB, Bunce M.

Forensic Sci Int Genet. 2012 Mar;6(2):268-73. doi: 10.1016/j.fsigen.2011.06.006. Epub 2011 Jul 7.

PMID:
21741338
46.

The evolutionary history of cockatoos (Aves: Psittaciformes: Cacatuidae).

White NE, Phillips MJ, Gilbert MT, Alfaro-Núñez A, Willerslev E, Mawson PR, Spencer PB, Bunce M.

Mol Phylogenet Evol. 2011 Jun;59(3):615-22. doi: 10.1016/j.ympev.2011.03.011. Epub 2011 Mar 16.

PMID:
21419232
47.

Profiling the dead: generating microsatellite data from fossil bones of extinct megafauna--protocols, problems, and prospects.

Allentoft ME, Oskam C, Houston J, Hale ML, Gilbert MT, Rasmussen M, Spencer P, Jacomb C, Willerslev E, Holdaway RN, Bunce M.

PLoS One. 2011 Jan 31;6(1):e16670. doi: 10.1371/journal.pone.0016670.

48.

Fossil avian eggshell preserves ancient DNA.

Oskam CL, Haile J, McLay E, Rigby P, Allentoft ME, Olsen ME, Bengtsson C, Miller GH, Schwenninger JL, Jacomb C, Walter R, Baynes A, Dortch J, Parker-Pearson M, Gilbert MT, Holdaway RN, Willerslev E, Bunce M.

Proc Biol Sci. 2010 Jul 7;277(1690):1991-2000. doi: 10.1098/rspb.2009.2019. Epub 2010 Mar 10.

49.

Ancient human genome sequence of an extinct Palaeo-Eskimo.

Rasmussen M, Li Y, Lindgreen S, Pedersen JS, Albrechtsen A, Moltke I, Metspalu M, Metspalu E, Kivisild T, Gupta R, Bertalan M, Nielsen K, Gilbert MT, Wang Y, Raghavan M, Campos PF, Kamp HM, Wilson AS, Gledhill A, Tridico S, Bunce M, Lorenzen ED, Binladen J, Guo X, Zhao J, Zhang X, Zhang H, Li Z, Chen M, Orlando L, Kristiansen K, Bak M, Tommerup N, Bendixen C, Pierre TL, Grønnow B, Meldgaard M, Andreasen C, Fedorova SA, Osipova LP, Higham TF, Ramsey CB, Hansen TV, Nielsen FC, Crawford MH, Brunak S, Sicheritz-Pontén T, Villems R, Nielsen R, Krogh A, Wang J, Willerslev E.

Nature. 2010 Feb 11;463(7282):757-62. doi: 10.1038/nature08835.

50.

Merging ancient and modern DNA: extinct seabird taxon rediscovered in the North Tasman Sea.

Steeves TE, Holdaway RN, Hale ML, McLay E, McAllan IA, Christian M, Hauber ME, Bunce M.

Biol Lett. 2010 Feb 23;6(1):94-7. doi: 10.1098/rsbl.2009.0478. Epub 2009 Aug 12.

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