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Items: 22


Dosage Compensation throughout the Schistosoma mansoni Lifecycle: Specific Chromatin Landscape of the Z Chromosome.

Picard MAL, Vicoso B, Roquis D, Bulla I, Augusto RC, Arancibia N, Grunau C, Boissier J, Cosseau C.

Genome Biol Evol. 2019 Jul 1;11(7):1909-1922. doi: 10.1093/gbe/evz133.


Correction: Sensitivity of joint contagiousness and susceptibility-based dynamic optimal control strategies for HIV prevention.

Bulla I, Spicknall IH, Gromov D, Romero-Severson EO.

PLoS One. 2019 Feb 7;14(2):e0212251. doi: 10.1371/journal.pone.0212251. eCollection 2019.


Universality of the DNA methylation codes in Eucaryotes.

Aliaga B, Bulla I, Mouahid G, Duval D, Grunau C.

Sci Rep. 2019 Jan 17;9(1):173. doi: 10.1038/s41598-018-37407-8.


Systematic evaluation of the population-level effects of alternative treatment strategies on the basic reproduction number.

Gromov D, Bulla I, Romero-Severson EO.

J Theor Biol. 2019 Feb 7;462:381-390. doi: 10.1016/j.jtbi.2018.11.029. Epub 2018 Nov 27.


Sensitivity of joint contagiousness and susceptibility-based dynamic optimal control strategies for HIV prevention.

Bulla I, Spickanll IH, Gromov D, Romero-Severson EO.

PLoS One. 2018 Oct 18;13(10):e0204741. doi: 10.1371/journal.pone.0204741. eCollection 2018. Erratum in: PLoS One. 2019 Feb 7;14(2):e0212251.


Notos - a galaxy tool to analyze CpN observed expected ratios for inferring DNA methylation types.

Bulla I, Aliaga B, Lacal V, Bulla J, Grunau C, Chaparro C.

BMC Bioinformatics. 2018 Mar 27;19(1):105. doi: 10.1186/s12859-018-2115-4.


Numerical optimal control for HIV prevention with dynamic budget allocation.

Gromov D, Bulla I, Silvia Serea O, Romero-Severson EO.

Math Med Biol. 2018 Dec 5;35(4):469-491. doi: 10.1093/imammb/dqx015.


Donor-Recipient Identification in Para- and Poly-phyletic Trees Under Alternative HIV-1 Transmission Hypotheses Using Approximate Bayesian Computation.

Romero-Severson EO, Bulla I, Hengartner N, Bártolo I, Abecasis A, Azevedo-Pereira JM, Taveira N, Leitner T.

Genetics. 2017 Nov;207(3):1089-1101. doi: 10.1534/genetics.117.300284. Epub 2017 Sep 14.


Genetic Variability of Myxoma Virus Genomes.

Braun C, Thürmer A, Daniel R, Schultz AK, Bulla I, Schirrmeier H, Mayer D, Neubert A, Czerny CP.

J Virol. 2017 Jan 31;91(4). pii: e01570-16. doi: 10.1128/JVI.01570-16. Print 2017 Feb 15.


Exploration of Circadian Rhythms in Patients with Bilateral Vestibular Loss.

Martin T, Moussay S, Bulla I, Bulla J, Toupet M, Etard O, Denise P, Davenne D, Coquerel A, Quarck G.

PLoS One. 2016 Jun 24;11(6):e0155067. doi: 10.1371/journal.pone.0155067. eCollection 2016.


Phylogenetically resolving epidemiologic linkage.

Romero-Severson EO, Bulla I, Leitner T.

Proc Natl Acad Sci U S A. 2016 Mar 8;113(10):2690-5. doi: 10.1073/pnas.1522930113. Epub 2016 Feb 22.


A Robust and Versatile Method of Combinatorial Chemical Synthesis of Gene Libraries via Hierarchical Assembly of Partially Randomized Modules.

Popova B, Schubert S, Bulla I, Buchwald D, Kramer W.

PLoS One. 2015 Sep 10;10(9):e0136778. doi: 10.1371/journal.pone.0136778. eCollection 2015.


A model-based information sharing protocol for profile Hidden Markov Models used for HIV-1 recombination detection.

Bulla I, Schultz AK, Chesneau C, Mark T, Serea F.

BMC Bioinformatics. 2014 Jun 19;15:205. doi: 10.1186/1471-2105-15-205.


Timing and order of transmission events is not directly reflected in a pathogen phylogeny.

Romero-Severson E, Skar H, Bulla I, Albert J, Leitner T.

Mol Biol Evol. 2014 Sep;31(9):2472-82. doi: 10.1093/molbev/msu179. Epub 2014 May 29.


ClassyFlu: classification of influenza A viruses with Discriminatively trained profile-HMMs.

Van der Auwera S, Bulla I, Ziller M, Pohlmann A, Harder T, Stanke M.

PLoS One. 2014 Jan 3;9(1):e84558. doi: 10.1371/journal.pone.0084558. eCollection 2014.


Genome dynamics in three different geographical isolates of white spot syndrome virus (WSSV).

Sablok G, Sánchez-Paz A, Wu X, Ranjan J, Kuo J, Bulla I.

Arch Virol. 2012 Dec;157(12):2357-62. doi: 10.1007/s00705-012-1395-7. Epub 2012 Jul 27.


jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus.

Schultz AK, Bulla I, Abdou-Chekaraou M, Gordien E, Morgenstern B, Zoaulim F, Dény P, Stanke M.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W193-8. doi: 10.1093/nar/gks414. Epub 2012 May 16.


Improving Hidden Markov Models for classification of human immunodeficiency virus-1 subtypes through linear classifier learning.

Bulla I, Schultz AK, Meinicke P.

Stat Appl Genet Mol Biol. 2012 Jan 6;11(1):Article 1. doi: 10.2202/1544-6115.1680.


Detection of viral sequence fragments of HIV-1 subfamilies yet unknown.

Unterthiner T, Schultz AK, Bulla J, Morgenstern B, Stanke M, Bulla I.

BMC Bioinformatics. 2011 Apr 11;12:93. doi: 10.1186/1471-2105-12-93.


HIV classification using the coalescent theory.

Bulla I, Schultz AK, Schreiber F, Zhang M, Leitner T, Korber B, Morgenstern B, Stanke M.

Bioinformatics. 2010 Jun 1;26(11):1409-15. doi: 10.1093/bioinformatics/btq159. Epub 2010 Apr 16.


The role of recombination in the emergence of a complex and dynamic HIV epidemic.

Zhang M, Foley B, Schultz AK, Macke JP, Bulla I, Stanke M, Morgenstern B, Korber B, Leitner T.

Retrovirology. 2010 Mar 23;7:25. doi: 10.1186/1742-4690-7-25.


jpHMM: improving the reliability of recombination prediction in HIV-1.

Schultz AK, Zhang M, Bulla I, Leitner T, Korber B, Morgenstern B, Stanke M.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W647-51. doi: 10.1093/nar/gkp371. Epub 2009 May 14. Erratum in: Nucleic Acids Res. 2010 Jan 1;38(3):1059.

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