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Items: 32

1.

Population structure of Betula albosinensis and Betula platyphylla: evidence for hybridization and a cryptic lineage.

Hu YN, Zhao L, Buggs RJA, Zhang XM, Li J, Wang N.

Ann Bot. 2019 Jul 8;123(7):1179-1189. doi: 10.1093/aob/mcz024.

2.

Genetic diversity maintained among fragmented populations of a tree undergoing range contraction.

Borrell JS, Wang N, Nichols RA, Buggs RJA.

Heredity (Edinb). 2018 Oct;121(4):304-318. doi: 10.1038/s41437-018-0132-8. Epub 2018 Aug 15.

3.

Genome-wide epigenetic variation among ash trees differing in susceptibility to a fungal disease.

Sollars ESA, Buggs RJA.

BMC Genomics. 2018 Jun 28;19(1):502. doi: 10.1186/s12864-018-4874-8.

4.

Ash leaf metabolomes reveal differences between trees tolerant and susceptible to ash dieback disease.

Sambles CM, Salmon DL, Florance H, Howard TP, Smirnoff N, Nielsen LR, McKinney LV, Kjær ED, Buggs RJA, Studholme DJ, Grant M.

Sci Data. 2017 Dec 19;4:170190. doi: 10.1038/sdata.2017.190.

5.
6.

The deepening of Darwin's abominable mystery.

Buggs RJA.

Nat Ecol Evol. 2017 May 23;1(6):169. doi: 10.1038/s41559-017-0169. No abstract available.

PMID:
28812628
7.

Genome sequence and genetic diversity of European ash trees.

Sollars ES, Harper AL, Kelly LJ, Sambles CM, Ramirez-Gonzalez RH, Swarbreck D, Kaithakottil G, Cooper ED, Uauy C, Havlickova L, Worswick G, Studholme DJ, Zohren J, Salmon DL, Clavijo BJ, Li Y, He Z, Fellgett A, McKinney LV, Nielsen LR, Douglas GC, Kjær ED, Downie JA, Boshier D, Lee S, Clark J, Grant M, Bancroft I, Caccamo M, Buggs RJ.

Nature. 2017 Jan 12;541(7636):212-216. doi: 10.1038/nature20786. Epub 2016 Dec 26.

PMID:
28024298
8.

Molecular phylogeny and genome size evolution of the genus Betula (Betulaceae).

Wang N, McAllister HA, Bartlett PR, Buggs RJ.

Ann Bot. 2016 May;117(6):1023-35. doi: 10.1093/aob/mcw048. Epub 2016 Apr 11.

9.

Unidirectional diploid-tetraploid introgression among British birch trees with shifting ranges shown by restriction site-associated markers.

Zohren J, Wang N, Kardailsky I, Borrell JS, Joecker A, Nichols RA, Buggs RJ.

Mol Ecol. 2016 Jun;25(11):2413-26. doi: 10.1111/mec.13644. Epub 2016 May 11.

10.

Molecular markers for tolerance of European ash (Fraxinus excelsior) to dieback disease identified using Associative Transcriptomics.

Harper AL, McKinney LV, Nielsen LR, Havlickova L, Li Y, Trick M, Fraser F, Wang L, Fellgett A, Sollars ES, Janacek SH, Downie JA, Buggs RJ, Kjær ED, Bancroft I.

Sci Rep. 2016 Jan 13;6:19335. doi: 10.1038/srep19335.

11.

250 years of hybridization between two biennial herb species without speciation.

Matthews A, Emelianova K, Hatimy AA, Chester M, Pellicer J, Ahmad KS, Guignard MS, Rouhan G, Soltis DE, Soltis PS, Leitch IJ, Leitch AR, Mavrodiev EV, Buggs RJ.

AoB Plants. 2015 Jul 17;7. pii: plv081. doi: 10.1093/aobpla/plv081.

12.

Speciation by genome duplication: Repeated origins and genomic composition of the recently formed allopolyploid species Mimulus peregrinus.

Vallejo-Marín M, Buggs RJA, Cooley AM, Puzey JR.

Evolution. 2015 Jun;69(6):1487-1500. doi: 10.1111/evo.12678. Epub 2015 May 27. Erratum in: Evolution. 2016 Mar;70(3):740-1.

13.

The legacy of diploid progenitors in allopolyploid gene expression patterns.

Buggs RJ, Wendel JF, Doyle JJ, Soltis DE, Soltis PS, Coate JE.

Philos Trans R Soc Lond B Biol Sci. 2014 Aug 5;369(1648). pii: 20130354. doi: 10.1098/rstb.2013.0354. Review.

14.

Molecular footprints of the Holocene retreat of dwarf birch in Britain.

Wang N, Borrell JS, Bodles WJ, Kuttapitiya A, Nichols RA, Buggs RJ.

Mol Ecol. 2014 Jun;23(11):2771-82. doi: 10.1111/mec.12768. Epub 2014 May 16.

15.

Unravelling gene expression of complex crop genomes.

Buggs RJ.

Heredity (Edinb). 2013 Feb;110(2):97-8. doi: 10.1038/hdy.2012.61. Epub 2012 Nov 21. No abstract available.

16.

Genome sequence of dwarf birch (Betula nana) and cross-species RAD markers.

Wang N, Thomson M, Bodles WJ, Crawford RM, Hunt HV, Featherstone AW, Pellicer J, Buggs RJ.

Mol Ecol. 2013 Jun;22(11):3098-111. doi: 10.1111/mec.12131. Epub 2012 Nov 21.

PMID:
23167599
17.

Monkeying around with ploidy.

Buggs RJ.

Mol Ecol. 2012 Nov;21(21):5159-61. doi: 10.1111/mec.12005.

PMID:
23075066
18.

Next-generation sequencing and genome evolution in allopolyploids.

Buggs RJ, Renny-Byfield S, Chester M, Jordon-Thaden IE, Viccini LF, Chamala S, Leitch AR, Schnable PS, Barbazuk WB, Soltis PS, Soltis DE.

Am J Bot. 2012 Feb;99(2):372-82. doi: 10.3732/ajb.1100395. Epub 2012 Jan 20. Review.

19.

Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin.

Buggs RJ, Chamala S, Wu W, Tate JA, Schnable PS, Soltis DE, Soltis PS, Barbazuk WB.

Curr Biol. 2012 Feb 7;22(3):248-52. doi: 10.1016/j.cub.2011.12.027. Epub 2012 Jan 19.

20.

Transcriptomic shock generates evolutionary novelty in a newly formed, natural allopolyploid plant.

Buggs RJ, Zhang L, Miles N, Tate JA, Gao L, Wei W, Schnable PS, Barbazuk WB, Soltis PS, Soltis DE.

Curr Biol. 2011 Apr 12;21(7):551-6. doi: 10.1016/j.cub.2011.02.016. Epub 2011 Mar 17.

21.

Tissue-specific silencing of homoeologs in natural populations of the recent allopolyploid Tragopogon mirus.

Buggs RJ, Elliott NM, Zhang L, Koh J, Viccini LF, Soltis DE, Soltis PS.

New Phytol. 2010 Apr;186(1):175-83. doi: 10.1111/j.1469-8137.2010.03205.x.

22.

Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping.

Buggs RJ, Chamala S, Wu W, Gao L, May GD, Schnable PS, Soltis DE, Soltis PS, Barbazuk WB.

Mol Ecol. 2010 Mar;19 Suppl 1:132-46. doi: 10.1111/j.1365-294X.2009.04469.x.

PMID:
20331776
23.

On the origins of species: does evolution repeat itself in polyploid populations of independent origin?

Soltis DE, Buggs RJ, Barbazuk WB, Schnable PS, Soltis PS.

Cold Spring Harb Symp Quant Biol. 2009;74:215-23. doi: 10.1101/sqb.2009.74.007. Epub 2009 Aug 17. Review.

PMID:
19687140
24.

Does hybridization between divergent progenitors drive whole-genome duplication?

Buggs RJ, Soltis PS, Soltis DE.

Mol Ecol. 2009 Aug;18(16):3334-9. doi: 10.1111/j.1365-294X.2009.04285.x. Epub 2009 Jul 14.

PMID:
19627486
25.

Synthetic polyploids of Tragopogon miscellus and T. mirus (Asteraceae): 60 Years after Ownbey's discovery.

Tate JA, Symonds VV, Doust AN, Buggs RJ, Mavrodiev E, Majure LC, Soltis PS, Soltis DE.

Am J Bot. 2009 May;96(5):979-88. doi: 10.3732/ajb.0800299.

26.

Gene loss and silencing in Tragopogon miscellus (Asteraceae): comparison of natural and synthetic allotetraploids.

Buggs RJ, Doust AN, Tate JA, Koh J, Soltis K, Feltus FA, Paterson AH, Soltis PS, Soltis DE.

Heredity (Edinb). 2009 Jul;103(1):73-81. doi: 10.1038/hdy.2009.24. Epub 2009 Mar 11.

27.

Towards natural polyploid model organisms.

Buggs RJ.

Mol Ecol. 2008 Apr;17(8):1875-6. doi: 10.1111/j.1365-294X.2008.03758.x. Epub 2008 Mar 18. No abstract available.

PMID:
18363660
28.

Empirical study of hybrid zone movement.

Buggs RJ.

Heredity (Edinb). 2007 Sep;99(3):301-12. Epub 2007 Jul 4. Review.

29.

Ecological differentiation and diploid superiority across a moving ploidy contact zone.

Buggs RJ, Pannell JR.

Evolution. 2007 Jan;61(1):125-40.

PMID:
17300432
30.

Hybridization, polyploidy, and the evolution of sexual systems in Mercurialis (Euphorbiaceae).

Obbard DJ, Harris SA, Buggs RJ, Pannell JR.

Evolution. 2006 Sep;60(9):1801-15.

PMID:
17089965
31.
32.

Development of anonymous cDNA microarrays to study changes to the Senecio floral transcriptome during hybrid speciation.

Hegarty MJ, Jones JM, Wilson ID, Barker GL, Coghill JA, Sanchez-Baracaldo P, Liu G, Buggs RJ, Abbott RJ, Edwards KJ, Hiscock SJ.

Mol Ecol. 2005 Jul;14(8):2493-510.

PMID:
15969730

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