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Items: 1 to 50 of 122

1.

Characterization of Thiamine Diphosphate-Dependent 4-Hydroxybenzoylformate Decarboxylase Enzymes from Rhodococcus jostii RHA1 and Pseudomonas fluorescens Pf-5 Involved in Degradation of Aryl C2 Lignin Degradation Fragments.

Wei Z, Wilkinson RC, Rashid GMM, Brown D, Fülöp V, Bugg TDH.

Biochemistry. 2019 May 24. doi: 10.1021/acs.biochem.9b00177. [Epub ahead of print]

PMID:
30946572
2.

Protein engineering of Pseudomonas fluorescens peroxidase Dyp1B for oxidation of phenolic and polymeric lignin substrates.

Rahman Pour R, Ehibhatiomhan A, Huang Y, Ashley B, Rashid GM, Mendel-Williams S, Bugg TDH.

Enzyme Microb Technol. 2019 Apr;123:21-29. doi: 10.1016/j.enzmictec.2019.01.002. Epub 2019 Jan 9.

PMID:
30686347
3.

Characterization of multicopper oxidase CopA from Pseudomonas putida KT2440 and Pseudomonas fluorescens Pf-5: Involvement in bacterial lignin oxidation.

Granja-Travez RS, Bugg TDH.

Arch Biochem Biophys. 2018 Dec 15;660:97-107. doi: 10.1016/j.abb.2018.10.012. Epub 2018 Oct 19.

PMID:
30347180
4.

Sphingobacterium sp. T2 Manganese Superoxide Dismutase Catalyzes the Oxidative Demethylation of Polymeric Lignin via Generation of Hydroxyl Radical.

Rashid GMM, Zhang X, Wilkinson RC, Fülöp V, Cottyn B, Baumberger S, Bugg TDH.

ACS Chem Biol. 2018 Oct 19;13(10):2920-2929. doi: 10.1021/acschembio.8b00557. Epub 2018 Oct 3.

PMID:
30247873
5.

Genome Sequence of Lysinibacillus sphaericus, a Lignin-Degrading Bacterium Isolated from Municipal Solid Waste Soil.

Persinoti GF, Paixão DAA, Bugg TDH, Squina FM.

Genome Announc. 2018 May 3;6(18). pii: e00353-18. doi: 10.1128/genomeA.00353-18.

6.

Lignolytic-consortium omics analyses reveal novel genomes and pathways involved in lignin modification and valorization.

Moraes EC, Alvarez TM, Persinoti GF, Tomazetto G, Brenelli LB, Paixão DAA, Ematsu GC, Aricetti JA, Caldana C, Dixon N, Bugg TDH, Squina FM.

Biotechnol Biofuels. 2018 Mar 22;11:75. doi: 10.1186/s13068-018-1073-4. eCollection 2018.

7.

Structural and functional characterisation of multi-copper oxidase CueO from lignin-degrading bacterium Ochrobactrum sp. reveal its activity towards lignin model compounds and lignosulfonate.

Granja-Travez RS, Wilkinson RC, Persinoti GF, Squina FM, Fülöp V, Bugg TDH.

FEBS J. 2018 May;285(9):1684-1700. doi: 10.1111/febs.14437. Epub 2018 Mar 30.

8.

Bacterial SBP56 identified as a Cu-dependent methanethiol oxidase widely distributed in the biosphere.

Eyice Ö, Myronova N, Pol A, Carrión O, Todd JD, Smith TJ, Gurman SJ, Cuthbertson A, Mazard S, Mennink-Kersten MA, Bugg TD, Andersson KK, Johnston AW, Op den Camp HJ, Schäfer H.

ISME J. 2018 Jan;12(1):145-160. doi: 10.1038/ismej.2017.148. Epub 2017 Oct 24.

9.

Delignification and enhanced gas release from soil containing lignocellulose by treatment with bacterial lignin degraders.

Rashid GMM, Durán-Peña MJ, Rahmanpour R, Sapsford D, Bugg TDH.

J Appl Microbiol. 2017 Jul;123(1):159-171. doi: 10.1111/jam.13470.

PMID:
28393443
10.

Promotion of Germination Using Hydroxamic Acid Inhibitors of 9-cis-Epoxycarotenoid Dioxygenase.

Awan SZ, Chandler JO, Harrison PJ, Sergeant MJ, Bugg TD, Thompson AJ.

Front Plant Sci. 2017 Mar 20;8:357. doi: 10.3389/fpls.2017.00357. eCollection 2017.

11.

Sansanmycin natural product analogues as potent and selective anti-mycobacterials that inhibit lipid I biosynthesis.

Tran AT, Watson EE, Pujari V, Conroy T, Dowman LJ, Giltrap AM, Pang A, Wong WR, Linington RG, Mahapatra S, Saunders J, Charman SA, West NP, Bugg TD, Tod J, Dowson CG, Roper DI, Crick DC, Britton WJ, Payne RJ.

Nat Commun. 2017 Mar 1;8:14414. doi: 10.1038/ncomms14414.

12.

Identification of an extracellular bacterial flavoenzyme that can prevent re-polymerisation of lignin fragments.

Rahmanpour R, King LD, Bugg TD.

Biochem Biophys Res Commun. 2017 Jan 1;482(1):57-61. doi: 10.1016/j.bbrc.2016.10.144. Epub 2016 Nov 2.

PMID:
27816454
13.

O2 -independent demethylation of trimethylamine N-oxide by Tdm of Methylocella silvestris.

Zhu Y, Ksibe AZ, Schäfer H, Blindauer CA, Bugg TD, Chen Y.

FEBS J. 2016 Nov;283(21):3979-3993. doi: 10.1111/febs.13902. Epub 2016 Oct 20.

14.

Esterase EstK from Pseudomonas putida mt-2: An enantioselective acetylesterase with activity for deacetylation of xylan and poly(vinylacetate).

Millar R, Rahmanpour R, Yuan EWJ, White C, Bugg TDH.

Biotechnol Appl Biochem. 2017 Nov;64(6):803-809. doi: 10.1002/bab.1536. Epub 2017 Apr 19.

PMID:
27696534
15.

Inhibition of phospho-MurNAc-pentapeptide translocase (MraY) by nucleoside natural product antibiotics, bacteriophage ϕX174 lysis protein E, and cationic antibacterial peptides.

Bugg TD, Rodolis MT, Mihalyi A, Jamshidi S.

Bioorg Med Chem. 2016 Dec 15;24(24):6340-6347. doi: 10.1016/j.bmc.2016.03.018. Epub 2016 Mar 9. Review.

PMID:
27021004
16.

Structure of Thermobifida fusca DyP-type peroxidase and activity towards Kraft lignin and lignin model compounds.

Rahmanpour R, Rea D, Jamshidi S, Fülöp V, Bugg TD.

Arch Biochem Biophys. 2016 Mar 15;594:54-60. doi: 10.1016/j.abb.2016.02.019. Epub 2016 Feb 18.

PMID:
26901432
17.

Lignocellulose degradation mechanisms across the Tree of Life.

Cragg SM, Beckham GT, Bruce NC, Bugg TD, Distel DL, Dupree P, Etxabe AG, Goodell BS, Jellison J, McGeehan JE, McQueen-Mason SJ, Schnorr K, Walton PH, Watts JE, Zimmer M.

Curr Opin Chem Biol. 2015 Dec;29:108-19. doi: 10.1016/j.cbpa.2015.10.018. Epub 2015 Nov 14. Review.

18.

Editorial overview: Energy: Prospects for fuels and chemicals from a biomass-based biorefinery using post-genomic chemical biology tools.

Bugg TD, Resch MG.

Curr Opin Chem Biol. 2015 Dec;29:v-vii. doi: 10.1016/j.cbpa.2015.10.031. Epub 2015 Nov 10. No abstract available.

PMID:
26574194
19.

Biochemical characterization and selective inhibition of β-carotene cis-trans isomerase D27 and carotenoid cleavage dioxygenase CCD8 on the strigolactone biosynthetic pathway.

Harrison PJ, Newgas SA, Descombes F, Shepherd SA, Thompson AJ, Bugg TD.

FEBS J. 2015 Oct;282(20):3986-4000. doi: 10.1111/febs.13400. Epub 2015 Aug 31.

20.

Identification of Manganese Superoxide Dismutase from Sphingobacterium sp. T2 as a Novel Bacterial Enzyme for Lignin Oxidation.

Rashid GM, Taylor CR, Liu Y, Zhang X, Rea D, Fülöp V, Bugg TD.

ACS Chem Biol. 2015 Oct 16;10(10):2286-94. doi: 10.1021/acschembio.5b00298. Epub 2015 Aug 3.

PMID:
26198187
21.

Enzymatic conversion of lignin into renewable chemicals.

Bugg TD, Rahmanpour R.

Curr Opin Chem Biol. 2015 Dec;29:10-7. doi: 10.1016/j.cbpa.2015.06.009. Epub 2015 Jun 26. Review.

PMID:
26121945
22.

Chemical intervention in bacterial lignin degradation pathways: Development of selective inhibitors for intradiol and extradiol catechol dioxygenases.

Sainsbury PD, Mineyeva Y, Mycroft Z, Bugg TD.

Bioorg Chem. 2015 Jun;60:102-9. doi: 10.1016/j.bioorg.2015.05.002. Epub 2015 May 9.

PMID:
25984987
23.

Characterisation of Dyp-type peroxidases from Pseudomonas fluorescens Pf-5: Oxidation of Mn(II) and polymeric lignin by Dyp1B.

Rahmanpour R, Bugg TD.

Arch Biochem Biophys. 2015 May 15;574:93-8. doi: 10.1016/j.abb.2014.12.022. Epub 2015 Jan 3.

PMID:
25558792
24.

Lead structures for new antibacterials: stereocontrolled synthesis of a bioactive muraymycin analogue.

Spork AP, Büschleb M, Ries O, Wiegmann D, Boettcher S, Mihalyi A, Bugg TD, Ducho C.

Chemistry. 2014 Nov 17;20(47):15292-7. doi: 10.1002/chem.201404775. Epub 2014 Oct 15.

PMID:
25318977
25.

Mechanism of action of the uridyl peptide antibiotics: an unexpected link to a protein-protein interaction site in translocase MraY.

Rodolis MT, Mihalyi A, Ducho C, Eitel K, Gust B, Goss RJ, Bugg TD.

Chem Commun (Camb). 2014 Nov 7;50(86):13023-5. doi: 10.1039/c4cc06516f.

PMID:
25222373
26.

Identification of novel inhibitors of phospho-MurNAc-pentapeptide translocase MraY from library screening: Isoquinoline alkaloid michellamine B and xanthene dye phloxine B.

Mihalyi A, Jamshidi S, Slikas J, Bugg TD.

Bioorg Med Chem. 2014 Sep 1;22(17):4566-71. doi: 10.1016/j.bmc.2014.07.035. Epub 2014 Jul 27.

PMID:
25127465
27.

Identification of a novel inhibition site in translocase MraY based upon the site of interaction with lysis protein E from bacteriophage ϕX174.

Rodolis MT, Mihalyi A, O'Reilly A, Slikas J, Roper DI, Hancock RE, Bugg TD.

Chembiochem. 2014 Jun 16;15(9):1300-8. doi: 10.1002/cbic.201402064. Epub 2014 Jun 4.

PMID:
24895118
28.

Observation of the time-course for peptidoglycan lipid intermediate II polymerization by Staphylococcus aureus monofunctional transglycosylase.

Braddick D, Sandhu S, Roper DI, Chappell MJ, Bugg TD.

Microbiology. 2014 Aug;160(Pt 8):1628-36. doi: 10.1099/mic.0.079442-0. Epub 2014 May 23.

PMID:
24858082
29.

Editorial: Antibacterial targets for the 21st century.

Bugg TD.

Bioorg Chem. 2014 Aug;55:1. doi: 10.1016/j.bioorg.2014.05.005. Epub 2014 May 14. No abstract available.

PMID:
24856786
30.

Periodic root branching in Arabidopsis requires synthesis of an uncharacterized carotenoid derivative.

Van Norman JM, Zhang J, Cazzonelli CI, Pogson BJ, Harrison PJ, Bugg TD, Chan KX, Thompson AJ, Benfey PN.

Proc Natl Acad Sci U S A. 2014 Apr 1;111(13):E1300-9. doi: 10.1073/pnas.1403016111. Epub 2014 Mar 17.

31.

Carnitine metabolism to trimethylamine by an unusual Rieske-type oxygenase from human microbiota.

Zhu Y, Jameson E, Crosatti M, Schäfer H, Rajakumar K, Bugg TD, Chen Y.

Proc Natl Acad Sci U S A. 2014 Mar 18;111(11):4268-73. doi: 10.1073/pnas.1316569111. Epub 2014 Mar 3.

32.

How to break the rules of dioxygen activation.

Bugg TD.

Chem Biol. 2014 Feb 20;21(2):168-9. doi: 10.1016/j.chembiol.2014.01.007.

33.

The dynamics of peptidoglycan structure and function: conference report on the 3rd Great Wall Symposium.

Williams AH, Boneca IG, Burrows LL, Bugg TD.

Res Microbiol. 2014 Jan;165(1):60-7. doi: 10.1016/j.resmic.2013.11.002. Epub 2013 Nov 15. No abstract available.

PMID:
24239960
34.

Enzymology of the carotenoid cleavage dioxygenases: reaction mechanisms, inhibition and biochemical roles.

Harrison PJ, Bugg TD.

Arch Biochem Biophys. 2014 Feb 15;544:105-11. doi: 10.1016/j.abb.2013.10.005. Epub 2013 Oct 19. Review.

PMID:
24144525
35.

Breaking down lignin to high-value chemicals: the conversion of lignocellulose to vanillin in a gene deletion mutant of Rhodococcus jostii RHA1.

Sainsbury PD, Hardiman EM, Ahmad M, Otani H, Seghezzi N, Eltis LD, Bugg TD.

ACS Chem Biol. 2013 Oct 18;8(10):2151-6. doi: 10.1021/cb400505a. Epub 2013 Aug 8.

PMID:
23898824
36.

Assembly in vitro of Rhodococcus jostii RHA1 encapsulin and peroxidase DypB to form a nanocompartment.

Rahmanpour R, Bugg TD.

FEBS J. 2013 May;280(9):2097-104. doi: 10.1111/febs.12234. Epub 2013 Apr 8.

37.

Biosynthesis: imaging cell-wall biosynthesis live.

Bugg TD.

Nat Chem. 2013 Jan;5(1):10-2. doi: 10.1038/nchem.1538. No abstract available.

PMID:
23247170
38.

Crystal structure of the Pseudomonas aeruginosa MurG: UDP-GlcNAc substrate complex.

Brown K, Vial SC, Dedi N, Westcott J, Scally S, Bugg TD, Charlton PA, Cheetham GM.

Protein Pept Lett. 2013 Sep;20(9):1002-8.

PMID:
22973843
39.

Isolation of bacterial strains able to metabolize lignin from screening of environmental samples.

Taylor CR, Hardiman EM, Ahmad M, Sainsbury PD, Norris PR, Bugg TD.

J Appl Microbiol. 2012 Sep;113(3):521-30. doi: 10.1111/j.1365-2672.2012.05352.x. Epub 2012 Jun 18.

40.

Detection of Staphylococcus aureus cell walls by enzyme-linked immunoassay using antibodies prepared from a semi-synthetic peptidoglycan precursor.

Sandhu S, Schouten JA, Thompson J, Davis M, Bugg TD.

Analyst. 2012 Mar 7;137(5):1130-6. doi: 10.1039/c2an16036f. Epub 2012 Jan 17.

PMID:
22249441
41.

Pathways for degradation of lignin in bacteria and fungi.

Bugg TD, Ahmad M, Hardiman EM, Rahmanpour R.

Nat Prod Rep. 2011 Nov;28(12):1883-96. doi: 10.1039/c1np00042j. Epub 2011 Sep 15. Review.

PMID:
21918777
42.

Characterization of dye-decolorizing peroxidases from Rhodococcus jostii RHA1.

Roberts JN, Singh R, Grigg JC, Murphy ME, Bugg TD, Eltis LD.

Biochemistry. 2011 Jun 14;50(23):5108-19. doi: 10.1021/bi200427h. Epub 2011 May 19.

PMID:
21534572
43.

Identification of DypB from Rhodococcus jostii RHA1 as a lignin peroxidase.

Ahmad M, Roberts JN, Hardiman EM, Singh R, Eltis LD, Bugg TD.

Biochemistry. 2011 Jun 14;50(23):5096-107. doi: 10.1021/bi101892z. Epub 2011 May 19.

PMID:
21534568
44.

Bacterial cell wall assembly: still an attractive antibacterial target.

Bugg TD, Braddick D, Dowson CG, Roper DI.

Trends Biotechnol. 2011 Apr;29(4):167-73. doi: 10.1016/j.tibtech.2010.12.006. Epub 2011 Jan 12. Review.

PMID:
21232809
45.

The emerging role for bacteria in lignin degradation and bio-product formation.

Bugg TD, Ahmad M, Hardiman EM, Singh R.

Curr Opin Biotechnol. 2011 Jun;22(3):394-400. doi: 10.1016/j.copbio.2010.10.009. Epub 2010 Nov 9.

PMID:
21071202
46.

Development of novel assays for lignin degradation: comparative analysis of bacterial and fungal lignin degraders.

Ahmad M, Taylor CR, Pink D, Burton K, Eastwood D, Bending GD, Bugg TD.

Mol Biosyst. 2010 May;6(5):815-21. doi: 10.1039/b908966g. Epub 2010 Feb 10.

PMID:
20567767
47.

Does abscisic acid affect strigolactone biosynthesis?

López-Ráez JA, Kohlen W, Charnikhova T, Mulder P, Undas AK, Sergeant MJ, Verstappen F, Bugg TD, Thompson AJ, Ruyter-Spira C, Bouwmeester H.

New Phytol. 2010 Jul;187(2):343-54. doi: 10.1111/j.1469-8137.2010.03291.x. Epub 2010 May 10.

48.

Inhibition of Escherichia coli glycosyltransferase MurG and Mycobacterium tuberculosis Gal transferase by uridine-linked transition state mimics.

Trunkfield AE, Gurcha SS, Besra GS, Bugg TD.

Bioorg Med Chem. 2010 Apr 1;18(7):2651-63. doi: 10.1016/j.bmc.2010.02.026. Epub 2010 Feb 19.

49.

Antimicrobial nucleoside antibiotics targeting cell wall assembly: recent advances in structure-function studies and nucleoside biosynthesis.

Winn M, Goss RJ, Kimura K, Bugg TD.

Nat Prod Rep. 2010 Feb;27(2):279-304. doi: 10.1039/b816215h. Epub 2009 Dec 16. Review.

PMID:
20111805
50.

Biomimetic formation of 2-tropolones by dioxygenase-catalysed ring expansion of substituted 2,4-cyclohexadienones.

Xin M, Bugg TD.

Chembiochem. 2010 Jan 25;11(2):272-6. doi: 10.1002/cbic.200900631.

PMID:
20013980

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