Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 163

1.

Novel mechanisms of cancer emerge when accounting for sex as a biological variable.

Wilson MA, Buetow KH.

Cancer Res. 2019 Nov 13. pii: canres.2634.2019. doi: 10.1158/0008-5472.CAN-19-2634. [Epub ahead of print]

PMID:
31722998
2.

Evolution of Immune Sexual Dimorphism in Response to Placental Invasiveness: A Reply to Greenbaum and Greenbaum.

Garcia AR, Natri H, Buetow KH, Trumble BC, Wilson MA.

Trends Genet. 2019 Nov 9. pii: S0168-9525(19)30201-X. doi: 10.1016/j.tig.2019.10.007. [Epub ahead of print] No abstract available.

PMID:
31718808
3.

Distinct molecular etiologies of male and female hepatocellular carcinoma.

Natri HM, Wilson MA, Buetow KH.

BMC Cancer. 2019 Oct 15;19(1):951. doi: 10.1186/s12885-019-6167-2.

4.

High GILT Expression and an Active and Intact MHC Class II Antigen Presentation Pathway Are Associated with Improved Survival in Melanoma.

Buetow KH, Meador LR, Menon H, Lu YK, Brill J, Cui H, Roe DJ, DiCaudo DJ, Hastings KT.

J Immunol. 2019 Nov 15;203(10):2577-2587. doi: 10.4049/jimmunol.1900476. Epub 2019 Oct 7.

PMID:
31591149
5.

The Pregnancy Pickle: Evolved Immune Compensation Due to Pregnancy Underlies Sex Differences in Human Diseases.

Natri H, Garcia AR, Buetow KH, Trumble BC, Wilson MA.

Trends Genet. 2019 Jul;35(7):478-488. doi: 10.1016/j.tig.2019.04.008. Review.

PMID:
31200807
6.

Tracking Cancer Genetic Evolution using OncoTrack.

Talukder AK, Agarwal M, Buetow KH, Denèfle PP.

Sci Rep. 2016 Jul 14;6:29647. doi: 10.1038/srep29647.

7.

Quantification of read species behavior within whole genome sequencing of cancer genomes for the stratification and visualization of genomic variation.

Hibsh D, Buetow KH, Yaari G, Efroni S.

Nucleic Acids Res. 2016 May 19;44(9):e81. doi: 10.1093/nar/gkw031. Epub 2016 Jan 24.

8.

Systems analysis utilising pathway interactions identifies sonic hedgehog pathway as a primary biomarker and oncogenic target in hepatocellular carcinoma.

Efroni S, Meerzaman D, Schaefer CF, Greenblum S, Soo-Lyu M, Hu Y, Cultraro C, Meshorer E, Buetow KH.

IET Syst Biol. 2013 Dec;7(6):243-51.

PMID:
24712101
9.

Genome-wide transcriptional sequencing identifies novel mutations in metabolic genes in human hepatocellular carcinoma.

Meerzaman DM, Yan C, Chen QR, Edmonson MN, Schaefer CF, Clifford RJ, Dunn BK, Dong L, Finney RP, Cultraro CM, Hu Y, Yang Z, Nguyen CV, Kelley JM, Cai S, Zhang H, Zhang J, Wilson R, Messmer L, Chung YH, Kim JA, Park NH, Lyu MS, Song IH, Komatsoulis G, Buetow KH.

Cancer Genomics Proteomics. 2014 Jan-Feb;11(1):1-12.

PMID:
24633315
10.

Tyrosine kinome sequencing of pediatric acute lymphoblastic leukemia: a report from the Children's Oncology Group TARGET Project.

Loh ML, Zhang J, Harvey RC, Roberts K, Payne-Turner D, Kang H, Wu G, Chen X, Becksfort J, Edmonson M, Buetow KH, Carroll WL, Chen IM, Wood B, Borowitz MJ, Devidas M, Gerhard DS, Bowman P, Larsen E, Winick N, Raetz E, Smith M, Downing JR, Willman CL, Mullighan CG, Hunger SP.

Blood. 2013 Jan 17;121(3):485-8. doi: 10.1182/blood-2012-04-422691. Epub 2012 Dec 4.

11.

Life sciences domain analysis model.

Freimuth RR, Freund ET, Schick L, Sharma MK, Stafford GA, Suzek BE, Hernandez J, Hipp J, Kelley JM, Rokicki K, Pan S, Buckler A, Stokes TH, Fernandez A, Fore I, Buetow KH, Klemm JD.

J Am Med Inform Assoc. 2012 Nov-Dec;19(6):1095-102. doi: 10.1136/amiajnl-2011-000763. Epub 2012 Jun 28.

12.

Integrated cross-species transcriptional network analysis of metastatic susceptibility.

Hu Y, Wu G, Rusch M, Lukes L, Buetow KH, Zhang J, Hunter KW.

Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):3184-9. doi: 10.1073/pnas.1117872109. Epub 2012 Jan 30.

13.

Key pathways are frequently mutated in high-risk childhood acute lymphoblastic leukemia: a report from the Children's Oncology Group.

Zhang J, Mullighan CG, Harvey RC, Wu G, Chen X, Edmonson M, Buetow KH, Carroll WL, Chen IM, Devidas M, Gerhard DS, Loh ML, Reaman GH, Relling MV, Camitta BM, Bowman WP, Smith MA, Willman CL, Downing JR, Hunger SP.

Blood. 2011 Sep 15;118(11):3080-7. doi: 10.1182/blood-2011-03-341412. Epub 2011 Jun 16.

14.

The PathOlogist: an automated tool for pathway-centric analysis.

Greenblum SI, Efroni S, Schaefer CF, Buetow KH.

BMC Bioinformatics. 2011 May 4;12:133. doi: 10.1186/1471-2105-12-133.

15.

Cyberinfrastructure and the biomedical sciences.

Hesse BW, Croyle RT, Buetow KH.

Am J Prev Med. 2011 May;40(5 Suppl 2):S97-102. doi: 10.1016/j.amepre.2011.01.006. No abstract available.

PMID:
21521604
16.

CREBBP mutations in relapsed acute lymphoblastic leukaemia.

Mullighan CG, Zhang J, Kasper LH, Lerach S, Payne-Turner D, Phillips LA, Heatley SL, Holmfeldt L, Collins-Underwood JR, Ma J, Buetow KH, Pui CH, Baker SD, Brindle PK, Downing JR.

Nature. 2011 Mar 10;471(7337):235-9. doi: 10.1038/nature09727.

17.

Detecting cancer gene networks characterized by recurrent genomic alterations in a population.

Efroni S, Ben-Hamo R, Edmonson M, Greenblum S, Schaefer CF, Buetow KH.

PLoS One. 2011 Jan 4;6(1):e14437. doi: 10.1371/journal.pone.0014437.

18.

Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format.

Edmonson MN, Zhang J, Yan C, Finney RP, Meerzaman DM, Buetow KH.

Bioinformatics. 2011 Mar 15;27(6):865-6. doi: 10.1093/bioinformatics/btr032. Epub 2011 Jan 28.

19.

Novel pathway analysis of genomic polymorphism-cancer risk interaction in the Breast Cancer Prevention Trial.

Dunn BK, Greene MH, Kelley JM, Costantino JP, Clifford RJ, Hu Y, Tang G, Kazerouni N, Rosenberg PS, Meerzaman DM, Buetow KH.

Int J Mol Epidemiol Genet. 2010;1(4):332-49. Epub 2010 Sep 5.

20.

Genetic variations at loci involved in the immune response are risk factors for hepatocellular carcinoma.

Clifford RJ, Zhang J, Meerzaman DM, Lyu MS, Hu Y, Cultraro CM, Finney RP, Kelley JM, Efroni S, Greenblum SI, Nguyen CV, Rowe WL, Sharma S, Wu G, Yan C, Zhang H, Chung YH, Kim JA, Park NH, Song IH, Buetow KH.

Hepatology. 2010 Dec;52(6):2034-43. doi: 10.1002/hep.23943.

PMID:
21105107
21.

The BioPAX community standard for pathway data sharing.

Demir E, Cary MP, Paley S, Fukuda K, Lemer C, Vastrik I, Wu G, D'Eustachio P, Schaefer C, Luciano J, Schacherer F, Martinez-Flores I, Hu Z, Jimenez-Jacinto V, Joshi-Tope G, Kandasamy K, Lopez-Fuentes AC, Mi H, Pichler E, Rodchenkov I, Splendiani A, Tkachev S, Zucker J, Gopinath G, Rajasimha H, Ramakrishnan R, Shah I, Syed M, Anwar N, Babur O, Blinov M, Brauner E, Corwin D, Donaldson S, Gibbons F, Goldberg R, Hornbeck P, Luna A, Murray-Rust P, Neumann E, Ruebenacker O, Samwald M, van Iersel M, Wimalaratne S, Allen K, Braun B, Whirl-Carrillo M, Cheung KH, Dahlquist K, Finney A, Gillespie M, Glass E, Gong L, Haw R, Honig M, Hubaut O, Kane D, Krupa S, Kutmon M, Leonard J, Marks D, Merberg D, Petri V, Pico A, Ravenscroft D, Ren L, Shah N, Sunshine M, Tang R, Whaley R, Letovksy S, Buetow KH, Rzhetsky A, Schachter V, Sobral BS, Dogrusoz U, McWeeney S, Aladjem M, Birney E, Collado-Vides J, Goto S, Hucka M, Le Novère N, Maltsev N, Pandey A, Thomas P, Wingender E, Karp PD, Sander C, Bader GD.

Nat Biotechnol. 2010 Sep;28(9):935-42. doi: 10.1038/nbt.1666. Epub 2010 Sep 9. Erratum in: Nat Biotechnol. 2010 Dec;28(12):1308. Nat Biotechnol. 2012 Apr;30(4):365. Reubenacker, Oliver [corrected to Ruebenacker, Oliver].

22.

The completion of the Mammalian Gene Collection (MGC).

MGC Project Team, Temple G, Gerhard DS, Rasooly R, Feingold EA, Good PJ, Robinson C, Mandich A, Derge JG, Lewis J, Shoaf D, Collins FS, Jang W, Wagner L, Shenmen CM, Misquitta L, Schaefer CF, Buetow KH, Bonner TI, Yankie L, Ward M, Phan L, Astashyn A, Brown G, Farrell C, Hart J, Landrum M, Maidak BL, Murphy M, Murphy T, Rajput B, Riddick L, Webb D, Weber J, Wu W, Pruitt KD, Maglott D, Siepel A, Brejova B, Diekhans M, Harte R, Baertsch R, Kent J, Haussler D, Brent M, Langton L, Comstock CL, Stevens M, Wei C, van Baren MJ, Salehi-Ashtiani K, Murray RR, Ghamsari L, Mello E, Lin C, Pennacchio C, Schreiber K, Shapiro N, Marsh A, Pardes E, Moore T, Lebeau A, Muratet M, Simmons B, Kloske D, Sieja S, Hudson J, Sethupathy P, Brownstein M, Bhat N, Lazar J, Jacob H, Gruber CE, Smith MR, McPherson J, Garcia AM, Gunaratne PH, Wu J, Muzny D, Gibbs RA, Young AC, Bouffard GG, Blakesley RW, Mullikin J, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Hirst M, Zeng T, Tse K, Moksa M, Deng M, Ma K, Mah D, Pang J, Taylor G, Chuah E, Deng A, Fichter K, Go A, Lee S, Wang J, Griffith M, Morin R, Moore RA, Mayo M, Munro S, Wagner S, Jones SJ, Holt RA, Marra MA, Lu S, Yang S, Hartigan J, Graf M, Wagner R, Letovksy S, Pulido JC, Robison K, Esposito D, Hartley J, Wall VE, Hopkins RF, Ohara O, Wiemann S.

Genome Res. 2009 Dec;19(12):2324-33. doi: 10.1101/gr.095976.109. Epub 2009 Sep 18.

23.
24.

An infrastructure for interconnecting research institutions.

Buetow KH.

Drug Discov Today. 2009 Jun;14(11-12):605-10. doi: 10.1016/j.drudis.2009.03.011. Epub 2009 Apr 1. Review.

PMID:
19508923
25.

Infrastructure for a learning health care system: CaBIG.

Buetow KH, Niederhuber J.

Health Aff (Millwood). 2009 May-Jun;28(3):923-4; author reply 924-5. doi: 10.1377/hlthaff.28.3.923-a. No abstract available.

PMID:
19414908
26.

e-Science, caGrid, and Translational Biomedical Research.

Saltz J, Kurc T, Hastings S, Langella S, Oster S, Ervin D, Sharma A, Pan T, Gurcan M, Permar J, Ferreira R, Payne P, Catalyurek U, Caserta E, Leone G, Ostrowski MC, Madduri R, Foster I, Madhavan S, Buetow KH, Shanbhag K, Siegel E.

Computer (Long Beach Calif). 2008 Nov;41(11):58-66.

27.

PID: the Pathway Interaction Database.

Schaefer CF, Anthony K, Krupa S, Buchoff J, Day M, Hannay T, Buetow KH.

Nucleic Acids Res. 2009 Jan;37(Database issue):D674-9. doi: 10.1093/nar/gkn653. Epub 2008 Oct 2.

28.

Superposition of transcriptional behaviors determines gene state.

Efroni S, Carmel L, Schaefer CG, Buetow KH.

PLoS One. 2008 Aug 6;3(8):e2901. doi: 10.1371/journal.pone.0002901.

29.

Global transcription in pluripotent embryonic stem cells.

Efroni S, Duttagupta R, Cheng J, Dehghani H, Hoeppner DJ, Dash C, Bazett-Jones DP, Le Grice S, McKay RD, Buetow KH, Gingeras TR, Misteli T, Meshorer E.

Cell Stem Cell. 2008 May 8;2(5):437-47. doi: 10.1016/j.stem.2008.03.021.

30.

Construction of reference genetic maps.

Buetow KH.

Curr Protoc Hum Genet. 2001 May;Chapter 1:Unit 1.5. doi: 10.1002/0471142905.hg0105s01.

PMID:
18428237
31.

Systematic analysis of genetic alterations in tumors using Cancer Genome WorkBench (CGWB).

Zhang J, Finney RP, Rowe W, Edmonson M, Yang SH, Dracheva T, Jen J, Struewing JP, Buetow KH.

Genome Res. 2007 Jul;17(7):1111-7. Epub 2007 May 24.

32.

Allele-specific chromatin immunoprecipitation studies show genetic influence on chromatin state in human genome.

Kadota M, Yang HH, Hu N, Wang C, Hu Y, Taylor PR, Buetow KH, Lee MP.

PLoS Genet. 2007 May 18;3(5):e81.

33.
34.

Genome-wide loss of heterozygosity and copy number alteration in esophageal squamous cell carcinoma using the Affymetrix GeneChip Mapping 10 K array.

Hu N, Wang C, Hu Y, Yang HH, Kong LH, Lu N, Su H, Wang QH, Goldstein AM, Buetow KH, Emmert-Buck MR, Taylor PR, Lee MP.

BMC Genomics. 2006 Nov 29;7:299.

35.

Cancers as wounds that do not heal: differences and similarities between renal regeneration/repair and renal cell carcinoma.

Riss J, Khanna C, Koo S, Chandramouli GV, Yang HH, Hu Y, Kleiner DE, Rosenwald A, Schaefer CF, Ben-Sasson SA, Yang L, Powell J, Kane DW, Star RA, Aprelikova O, Bauer K, Vasselli JR, Maranchie JK, Kohn KW, Buetow KH, Linehan WM, Weinstein JN, Lee MP, Klausner RD, Barrett JC.

Cancer Res. 2006 Jul 15;66(14):7216-24.

36.

SNPdetector: a software tool for sensitive and accurate SNP detection.

Zhang J, Wheeler DA, Yakub I, Wei S, Sood R, Rowe W, Liu PP, Gibbs RA, Buetow KH.

PLoS Comput Biol. 2005 Oct;1(5):e53. Epub 2005 Oct 28.

37.

ATG deserts define a novel core promoter subclass.

Lee MP, Howcroft K, Kotekar A, Yang HH, Buetow KH, Singer DS.

Genome Res. 2005 Sep;15(9):1189-97. Epub 2005 Aug 18.

38.

Cyberinfrastructure: empowering a "third way" in biomedical research.

Buetow KH.

Science. 2005 May 6;308(5723):821-4.

PMID:
15879210
39.

Genome-wide association study in esophageal cancer using GeneChip mapping 10K array.

Hu N, Wang C, Hu Y, Yang HH, Giffen C, Tang ZZ, Han XY, Goldstein AM, Emmert-Buck MR, Buetow KH, Taylor PR, Lee MP.

Cancer Res. 2005 Apr 1;65(7):2542-6.

40.

Detecting false expression signals in high-density oligonucleotide arrays by an in silico approach.

Zhang J, Finney RP, Clifford RJ, Derr LK, Buetow KH.

Genomics. 2005 Mar;85(3):297-308.

PMID:
15718097
41.

Interlaboratory comparability study of cancer gene expression analysis using oligonucleotide microarrays.

Dobbin KK, Beer DG, Meyerson M, Yeatman TJ, Gerald WL, Jacobson JW, Conley B, Buetow KH, Heiskanen M, Simon RM, Minna JD, Girard L, Misek DE, Taylor JM, Hanash S, Naoki K, Hayes DN, Ladd-Acosta C, Enkemann SA, Viale A, Giordano TJ.

Clin Cancer Res. 2005 Jan 15;11(2 Pt 1):565-72.

42.

A high-resolution multistrain haplotype analysis of laboratory mouse genome reveals three distinctive genetic variation patterns.

Zhang J, Hunter KW, Gandolph M, Rowe WL, Finney RP, Kelley JM, Edmonson M, Buetow KH.

Genome Res. 2005 Feb;15(2):241-9.

43.

Hemochromatosis gene mutations and distal adenomatous colorectal polyps.

McGlynn KA, Sakoda LC, Hu Y, Schoen RE, Bresalier RS, Yeager M, Chanock S, Hayes RB, Buetow KH.

Cancer Epidemiol Biomarkers Prev. 2005 Jan;14(1):158-63.

44.

Bioinformatics tools for single nucleotide polymorphism discovery and analysis.

Clifford RJ, Edmonson MN, Nguyen C, Scherpbier T, Hu Y, Buetow KH.

Ann N Y Acad Sci. 2004 May;1020:101-9. Review.

PMID:
15208187
45.

A computational approach to measuring coherence of gene expression in pathways.

Yang HH, Hu Y, Buetow KH, Lee MP.

Genomics. 2004 Jul;84(1):211-7.

PMID:
15203219
46.

The NCI Center for Bioinformatics (NCICB): building a foundation for in silico biomedical research.

Buetow KH.

Cancer Invest. 2004;22(1):117-22. No abstract available.

PMID:
15069769
47.

Comparative sequence analysis of imprinted genes between human and mouse to reveal imprinting signatures.

Wang Z, Fan H, Yang HH, Hu Y, Buetow KH, Lee MP.

Genomics. 2004 Mar;83(3):395-401.

PMID:
14962665
48.

Large-scale analysis of non-synonymous coding region single nucleotide polymorphisms.

Clifford RJ, Edmonson MN, Nguyen C, Buetow KH.

Bioinformatics. 2004 May 1;20(7):1006-14. Epub 2004 Jan 29.

PMID:
14751981
49.

Direct ampholyte-free liquid-phase isoelectric peptide focusing: application to the human serum proteome.

Xiao Z, Conrads TP, Lucas DA, Janini GM, Schaefer CF, Buetow KH, Issaq HJ, Veenstra TD.

Electrophoresis. 2004 Jan;25(1):128-33.

PMID:
14730577
50.

caCORE: a common infrastructure for cancer informatics.

Covitz PA, Hartel F, Schaefer C, De Coronado S, Fragoso G, Sahni H, Gustafson S, Buetow KH.

Bioinformatics. 2003 Dec 12;19(18):2404-12.

PMID:
14668224

Supplemental Content

Loading ...
Support Center