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Items: 1 to 50 of 80

1.

Induction of homologous recombination between sequence repeats by the activation induced cytidine deaminase (AID) protein.

Buerstedde JM, Lowndes N, Schatz DG.

Elife. 2014 Jul 8;3:e03110. doi: 10.7554/eLife.03110.

2.

Targeting of somatic hypermutation by immunoglobulin enhancer and enhancer-like sequences.

Buerstedde JM, Alinikula J, Arakawa H, McDonald JJ, Schatz DG.

PLoS Biol. 2014 Apr 1;12(4):e1001831. doi: 10.1371/journal.pbio.1001831. eCollection 2014 Apr.

3.

Directed evolution of an angiopoietin-2 ligand trap by somatic hypermutation and cell surface display.

Brindle NP, Sale JE, Arakawa H, Buerstedde JM, Nuamchit T, Sharma S, Steele KH.

J Biol Chem. 2013 Nov 15;288(46):33205-12. doi: 10.1074/jbc.M113.510578. Epub 2013 Oct 8.

4.

A critical context-dependent role for E boxes in the targeting of somatic hypermutation.

McDonald JJ, Alinikula J, Buerstedde JM, Schatz DG.

J Immunol. 2013 Aug 15;191(4):1556-66. doi: 10.4049/jimmunol.1300969. Epub 2013 Jul 8.

5.

Identification of core DNA elements that target somatic hypermutation.

Kohler KM, McDonald JJ, Duke JL, Arakawa H, Tan S, Kleinstein SH, Buerstedde JM, Schatz DG.

J Immunol. 2012 Dec 1;189(11):5314-26. doi: 10.4049/jimmunol.1202082. Epub 2012 Oct 19.

6.

Understanding the immunoglobulin locus specificity of hypermutation.

Batrak V, Blagodatski A, Buerstedde JM.

Methods Mol Biol. 2011;745:311-26. doi: 10.1007/978-1-61779-129-1_18.

PMID:
21660702
7.

A cis-acting diversification activator both necessary and sufficient for AID-mediated hypermutation.

Blagodatski A, Batrak V, Schmidl S, Schoetz U, Caldwell RB, Arakawa H, Buerstedde JM.

PLoS Genet. 2009 Jan;5(1):e1000332. doi: 10.1371/journal.pgen.1000332. Epub 2009 Jan 9.

8.

Activation-induced cytidine deaminase-mediated hypermutation in the DT40 cell line.

Arakawa H, Buerstedde JM.

Philos Trans R Soc Lond B Biol Sci. 2009 Mar 12;364(1517):639-44. doi: 10.1098/rstb.2008.0202. Review.

9.

The 9-1-1 DNA clamp is required for immunoglobulin gene conversion.

Saberi A, Nakahara M, Sale JE, Kikuchi K, Arakawa H, Buerstedde JM, Yamamoto K, Takeda S, Sonoda E.

Mol Cell Biol. 2008 Oct;28(19):6113-22. doi: 10.1128/MCB.00156-08. Epub 2008 Jul 28.

10.

Gene function analysis using the chicken B-cell line DT40.

Caldwell RB, Fiedler P, Schoetz U, Buerstedde JM.

Methods Mol Biol. 2007;408:193-210. doi: 10.1007/978-1-59745-547-3_11.

PMID:
18314584
11.

Protein evolution by hypermutation and selection in the B cell line DT40.

Arakawa H, Kudo H, Batrak V, Caldwell RB, Rieger MA, Ellwart JW, Buerstedde JM.

Nucleic Acids Res. 2008 Jan;36(1):e1. Epub 2007 Dec 11.

12.

Dependence of antibody gene diversification on uracil excision.

Di Noia JM, Williams GT, Chan DT, Buerstedde JM, Baldwin GS, Neuberger MS.

J Exp Med. 2007 Dec 24;204(13):3209-19. Epub 2007 Dec 10.

13.

Cells deficient in the FANC/BRCA pathway are hypersensitive to plasma levels of formaldehyde.

Ridpath JR, Nakamura A, Tano K, Luke AM, Sonoda E, Arakawa H, Buerstedde JM, Gillespie DA, Sale JE, Yamazoe M, Bishop DK, Takata M, Takeda S, Watanabe M, Swenberg JA, Nakamura J.

Cancer Res. 2007 Dec 1;67(23):11117-22.

14.

Subcellular distribution of human RDM1 protein isoforms and their nucleolar accumulation in response to heat shock and proteotoxic stress.

Messaoudi L, Yang YG, Kinomura A, Stavreva DA, Yan G, Bortolin-Cavaillé ML, Arakawa H, Buerstedde JM, Hainaut P, Cavaillé J, Takata M, Van Dyck E.

Nucleic Acids Res. 2007;35(19):6571-87. Epub 2007 Sep 28.

15.

Biotechnology and the chicken B cell line DT40.

Bachl J, Caldwell RB, Buerstedde JM.

Cytogenet Genome Res. 2007;117(1-4):189-94.

PMID:
17675859
16.

Subcloning Dt40 by limiting dilution.

Buerstedde JM.

Subcell Biochem. 2006;40:393-4.

PMID:
17623927
17.

Immunoglobulin gene conversion or hypermutation: that's the question.

Buerstedde JM, Arakawa H.

Subcell Biochem. 2006;40:11-24. Review.

PMID:
17623897
18.

Dt40 gene disruptions: a how-to for the design and the construction of targeting vectors.

Arakawa H, Buerstedde JM.

Subcell Biochem. 2006;40:1-9. Review.

PMID:
17623896
19.

Interplay between DNA polymerases beta and lambda in repair of oxidation DNA damage in chicken DT40 cells.

Tano K, Nakamura J, Asagoshi K, Arakawa H, Sonoda E, Braithwaite EK, Prasad R, Buerstedde JM, Takeda S, Watanabe M, Wilson SH.

DNA Repair (Amst). 2007 Jun 1;6(6):869-75. Epub 2007 Mar 23.

20.

RAD18 and poly(ADP-ribose) polymerase independently suppress the access of nonhomologous end joining to double-strand breaks and facilitate homologous recombination-mediated repair.

Saberi A, Hochegger H, Szuts D, Lan L, Yasui A, Sale JE, Taniguchi Y, Murakawa Y, Zeng W, Yokomori K, Helleday T, Teraoka H, Arakawa H, Buerstedde JM, Takeda S.

Mol Cell Biol. 2007 Apr;27(7):2562-71. Epub 2007 Jan 22.

21.

A role for PCNA ubiquitination in immunoglobulin hypermutation.

Arakawa H, Moldovan GL, Saribasak H, Saribasak NN, Jentsch S, Buerstedde JM.

PLoS Biol. 2006 Nov;4(11):e366.

22.

Vertebrate POLQ and POLbeta cooperate in base excision repair of oxidative DNA damage.

Yoshimura M, Kohzaki M, Nakamura J, Asagoshi K, Sonoda E, Hou E, Prasad R, Wilson SH, Tano K, Yasui A, Lan L, Seki M, Wood RD, Arakawa H, Buerstedde JM, Hochegger H, Okada T, Hiraoka M, Takeda S.

Mol Cell. 2006 Oct 6;24(1):115-25.

23.

Activation of the chicken Ig-beta locus by the collaboration of scattered regulatory regions through changes in chromatin structure.

Shimada N, Matsudo H, Osano K, Arakawa H, Buerstedde JM, Matsumoto Y, Chayahara K, Torihata A, Ono M.

Nucleic Acids Res. 2006 Aug 11;34(13):3794-802. Print 2006.

24.

E2A expression stimulates Ig hypermutation.

Schoetz U, Cervelli M, Wang YD, Fiedler P, Buerstedde JM.

J Immunol. 2006 Jul 1;177(1):395-400.

25.

Loss of Pax5 promotes plasma cell differentiation.

Nera KP, Kohonen P, Narvi E, Peippo A, Mustonen L, Terho P, Koskela K, Buerstedde JM, Lassila O.

Immunity. 2006 Mar;24(3):283-93.

26.

Ikaros has a crucial role in regulation of B cell receptor signaling.

Nera KP, Alinikula J, Terho P, Narvi E, Törnquist K, Kurosaki T, Buerstedde JM, Lassila O.

Eur J Immunol. 2006 Mar;36(3):516-25.

27.

Differential contributions of mammalian Rad54 paralogs to recombination, DNA damage repair, and meiosis.

Wesoly J, Agarwal S, Sigurdsson S, Bussen W, Van Komen S, Qin J, van Steeg H, van Benthem J, Wassenaar E, Baarends WM, Ghazvini M, Tafel AA, Heath H, Galjart N, Essers J, Grootegoed JA, Arnheim N, Bezzubova O, Buerstedde JM, Sung P, Kanaar R.

Mol Cell Biol. 2006 Feb;26(3):976-89.

28.

Uracil DNA glycosylase disruption blocks Ig gene conversion and induces transition mutations.

Saribasak H, Saribasak NN, Ipek FM, Ellwart JW, Arakawa H, Buerstedde JM.

J Immunol. 2006 Jan 1;176(1):365-71.

29.

Multiple repair pathways mediate tolerance to chemotherapeutic cross-linking agents in vertebrate cells.

Nojima K, Hochegger H, Saberi A, Fukushima T, Kikuchi K, Yoshimura M, Orelli BJ, Bishop DK, Hirano S, Ohzeki M, Ishiai M, Yamamoto K, Takata M, Arakawa H, Buerstedde JM, Yamazoe M, Kawamoto T, Araki K, Takahashi JA, Hashimoto N, Takeda S, Sonoda E.

Cancer Res. 2005 Dec 15;65(24):11704-11.

30.

Second report on chicken genes and chromosomes 2005.

Schmid M, Nanda I, Hoehn H, Schartl M, Haaf T, Buerstedde JM, Arakawa H, Caldwell RB, Weigend S, Burt DW, Smith J, Griffin DK, Masabanda JS, Groenen MA, Crooijmans RP, Vignal A, Fillon V, Morisson M, Pitel F, Vignoles M, Garrigues A, Gellin J, Rodionov AV, Galkina SA, Lukina NA, Ben-Ari G, Blum S, Hillel J, Twito T, Lavi U, David L, Feldman MW, Delany ME, Conley CA, Fowler VM, Hedges SB, Godbout R, Katyal S, Smith C, Hudson Q, Sinclair A, Mizuno S.

Cytogenet Genome Res. 2005;109(4):415-79. Review. No abstract available.

PMID:
15905640
31.

Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis.

Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P, Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci P, Hayashizaki Y, Buerstedde JM.

Genome Biol. 2005;6(1):R6. Epub 2004 Dec 23.

32.

Functional relationships of FANCC to homologous recombination, translesion synthesis, and BLM.

Hirano S, Yamamoto K, Ishiai M, Yamazoe M, Seki M, Matsushita N, Ohzeki M, Yamashita YM, Arakawa H, Buerstedde JM, Enomoto T, Takeda S, Thompson LH, Takata M.

EMBO J. 2005 Jan 26;24(2):418-27. Epub 2004 Dec 23.

33.

RDM1, a novel RNA recognition motif (RRM)-containing protein involved in the cell response to cisplatin in vertebrates.

Hamimes S, Arakawa H, Stasiak AZ, Kierzek AM, Hirano S, Yang YG, Takata M, Stasiak A, Buerstedde JM, Van Dyck E.

J Biol Chem. 2005 Mar 11;280(10):9225-35. Epub 2004 Dec 14.

34.

Evaluation of the chicken transcriptome by SAGE of B cells and the DT40 cell line.

Wahl MB, Caldwell RB, Kierzek AM, Arakawa H, Eyras E, Hubner N, Jung C, Soeldenwagner M, Cervelli M, Wang YD, Liebscher V, Buerstedde JM.

BMC Genomics. 2004 Dec 21;5:98.

35.

Fanconi anemia protein FANCD2 promotes immunoglobulin gene conversion and DNA repair through a mechanism related to homologous recombination.

Yamamoto K, Hirano S, Ishiai M, Morishima K, Kitao H, Namikoshi K, Kimura M, Matsushita N, Arakawa H, Buerstedde JM, Komatsu K, Thompson LH, Takata M.

Mol Cell Biol. 2005 Jan;25(1):34-43.

36.

DNA cross-link repair protein SNM1A interacts with PIAS1 in nuclear focus formation.

Ishiai M, Kimura M, Namikoshi K, Yamazoe M, Yamamoto K, Arakawa H, Agematsu K, Matsushita N, Takeda S, Buerstedde JM, Takata M.

Mol Cell Biol. 2004 Dec;24(24):10733-41.

37.
38.

Immunoglobulin gene conversion: insights from bursal B cells and the DT40 cell line.

Arakawa H, Buerstedde JM.

Dev Dyn. 2004 Mar;229(3):458-64. Review.

39.

Identification of a novel cytokine-like transcript differentially expressed in avian gammadelta T cells.

Koskela K, Kohonen P, Salminen H, Uchida T, Buerstedde JM, Lassila O.

Immunogenetics. 2004 Mar;55(12):845-54. Epub 2004 Feb 4.

PMID:
14760511
40.

Insight into lymphoid development by gene expression profiling of avian B cells.

Koskela K, Kohonen P, Nieminen P, Buerstedde JM, Lassila O.

Immunogenetics. 2003 Sep;55(6):412-22. Epub 2003 Aug 21.

PMID:
12937956
41.

Fanconi anemia FANCG protein in mitigating radiation- and enzyme-induced DNA double-strand breaks by homologous recombination in vertebrate cells.

Yamamoto K, Ishiai M, Matsushita N, Arakawa H, Lamerdin JE, Buerstedde JM, Tanimoto M, Harada M, Thompson LH, Takata M.

Mol Cell Biol. 2003 Aug;23(15):5421-30.

42.

Somatic hypermutation does not require Rad54 and Rad54B-mediated homologous recombination.

Bross L, Wesoly J, Buerstedde JM, Kanaar R, Jacobs H.

Eur J Immunol. 2003 Feb;33(2):352-7.

43.

Targeted disruption of the GAS41 gene encoding a putative transcription factor indicates that GAS41 is essential for cell viability.

Zimmermann K, Ahrens K, Matthes S, Buerstedde JM, Strätling WH, Phi-van L.

J Biol Chem. 2002 May 24;277(21):18626-31. Epub 2002 Mar 18.

44.

Requirement of the activation-induced deaminase (AID) gene for immunoglobulin gene conversion.

Arakawa H, Hauschild J, Buerstedde JM.

Science. 2002 Feb 15;295(5558):1301-6.

45.

The DT40 web site: sampling and connecting the genes of a B cell line.

Buerstedde JM, Arakawa H, Watahiki A, Carninci PP, Hayashizaki YY, Korn B, Plachy J.

Nucleic Acids Res. 2002 Jan 1;30(1):230-1.

46.

Mutant loxP vectors for selectable marker recycle and conditional knock-outs.

Arakawa H, Lodygin D, Buerstedde JM.

BMC Biotechnol. 2001;1:7. Epub 2001 Sep 26.

47.

FOUNTAIN: a JAVA open-source package to assist large sequencing projects.

Buerstedde JM, Prill F.

BMC Bioinformatics. 2001;2:6. Epub 2001 Sep 21.

48.

First report on chicken genes and chromosomes 2000.

Schmid M, Nanda I, Guttenbach M, Steinlein C, Hoehn M, Schartl M, Haaf T, Weigend S, Fries R, Buerstedde JM, Wimmers K, Burt DW, Smith J, A'Hara S, Law A, Griffin DK, Bumstead N, Kaufman J, Thomson PA, Burke T, Groenen MA, Crooijmans RP, Vignal A, Fillon V, Morisson M, Pitel F, Tixier-Boichard M, Ladjali-Mohammedi K, Hillel J, Mäki-Tanila A, Cheng HH, Delany ME, Burnside J, Mizuno S.

Cytogenet Cell Genet. 2000;90(3-4):169-218. Review. No abstract available.

PMID:
11124517
49.

A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function.

Abdrakhmanov I, Lodygin D, Geroth P, Arakawa H, Law A, Plachy J, Korn B, Buerstedde JM.

Genome Res. 2000 Dec;10(12):2062-9.

50.

Influence of selection criteria on mutation detection in patients with hereditary nonpolyposis colorectal cancer.

Heinimann K, Scott RJ, Buerstedde JM, Weber W, Siebold K, Attenhofer M, Müller H, Dobbie Z.

Cancer. 1999 Jun 15;85(12):2512-8.

PMID:
10375096

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