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Items: 1 to 50 of 95

1.

Is one dose of human papillomavirus vaccine as effective as three?: A national cohort analysis.

Brotherton JM, Budd A, Rompotis C, Bartlett N, Malloy MJ, Andersen RL, Coulter KA, Couvee PW, Steel N, Ward GH, Saville M.

Papillomavirus Res. 2019 Jul 15:100177. doi: 10.1016/j.pvr.2019.100177. [Epub ahead of print]

2.

Introduction to Genome Biology and Diversity.

Youssef N, Budd A, Bielawski JP.

Methods Mol Biol. 2019;1910:3-31. doi: 10.1007/978-1-4939-9074-0_1.

PMID:
31278660
3.

Update: Influenza Activity in the United States During the 2018-19 Season and Composition of the 2019-20 Influenza Vaccine.

Xu X, Blanton L, Elal AIA, Alabi N, Barnes J, Biggerstaff M, Brammer L, Budd AP, Burns E, Cummings CN, Garg S, Kondor R, Gubareva L, Kniss K, Nyanseor S, O'Halloran A, Rolfes M, Sessions W, Dugan VG, Fry AM, Wentworth DE, Stevens J, Jernigan D.

MMWR Morb Mortal Wkly Rep. 2019 Jun 21;68(24):544-551. doi: 10.15585/mmwr.mm6824a3.

4.

Birth Cohort Effects in Influenza Surveillance Data: Evidence that First Influenza Infection Affects Later Influenza-Associated Illness.

Budd AP, Beacham L, Smith CB, Garten RJ, Reed C, Kniss K, Mustaquim D, Ahmad FB, Cummings CN, Garg S, Levine MZ, Fry AM, Brammer L.

J Infect Dis. 2019 May 3. pii: jiz201. doi: 10.1093/infdis/jiz201. [Epub ahead of print]

PMID:
31053844
5.

Direction of the Biopsy Needle in Ultrasound-Guided Renal Biopsy Impacts Specimen Adequacy and Risk of Bleeding.

Sawicka K, Hassan N, Dumaine C, Budd A, Wall C, Banerjee T, Lim HJ, Mondal P, Barton J, Moser MAJ.

Can Assoc Radiol J. 2019 Mar 27. pii: S0846-5371(18)30208-0. doi: 10.1016/j.carj.2018.11.006. [Epub ahead of print]

PMID:
30928202
6.

Update: Influenza Activity - United States, September 30, 2018-February 2, 2019.

Blanton L, Dugan VG, Abd Elal AI, Alabi N, Barnes J, Brammer L, Budd AP, Burns E, Cummings CN, Garg S, Garten R, Gubareva L, Kniss K, Kramer N, O'Halloran A, Reed C, Rolfes M, Sessions W, Taylor C, Xu X, Fry AM, Wentworth DE, Katz J, Jernigan D.

MMWR Morb Mortal Wkly Rep. 2019 Feb 15;68(6):125-134. doi: 10.15585/mmwr.mm6806a1.

7.

Use of ProtekDuo as Veno-arterial and Veno-venous Extracorporeal Membrane Oxygenation During Bilateral Lung Transplantation.

Budd AN, Kozarek K, Kurihara C, Bharat A, Reynolds A, Kretzer A.

J Cardiothorac Vasc Anesth. 2019 Aug;33(8):2250-2254. doi: 10.1053/j.jvca.2018.12.025. Epub 2018 Dec 22. No abstract available.

PMID:
30685152
8.

Influenza Activity - United States, September 30-December 1, 2018.

Budd AP, Abd Elal AI, Alabi N, Barnes J, Blanton L, Brammer L, Burns E, Cummings CN, Dugan VG, Garg S, Garten R, Grohskopf LA, Gubareva L, Kniss K, Kramer N, O'Halloran A, Sessions W, Taylor C, Wentworth DE, Xu X, Fry AM, Katz J, Jernigan D.

MMWR Morb Mortal Wkly Rep. 2018 Dec 14;67(49):1369-1371. doi: 10.15585/mmwr.mm6749a4.

9.

SignaLink: Multilayered Regulatory Networks.

Csabai L, Ölbei M, Budd A, Korcsmáros T, Fazekas D.

Methods Mol Biol. 2018;1819:53-73. doi: 10.1007/978-1-4939-8618-7_3.

PMID:
30421399
10.

Update: Influenza Activity - United States and Worldwide, May 20-October 13, 2018.

Chow EJ, Davis CT, Abd Elal AI, Alabi N, Azziz-Baumgartner E, Barnes J, Blanton L, Brammer L, Budd AP, Burns E, Davis WW, Dugan VG, Fry AM, Garten R, Grohskopf LA, Gubareva L, Jang Y, Jones J, Kniss K, Lindstrom S, Mustaquim D, Porter R, Rolfes M, Sessions W, Taylor C, Wentworth DE, Xu X, Zanders N, Katz J, Jernigan D.

MMWR Morb Mortal Wkly Rep. 2018 Oct 26;67(42):1178-1185. doi: 10.15585/mmwr.mm6742a3.

11.

Sex-specific dmrt1 and cyp19a1 methylation and alternative splicing in gonads of the protandrous hermaphrodite barramundi.

Domingos JA, Budd AM, Banh QQ, Goldsbury JA, Zenger KR, Jerry DR.

PLoS One. 2018 Sep 18;13(9):e0204182. doi: 10.1371/journal.pone.0204182. eCollection 2018.

12.

Pandemic Influenza Readiness Report on Laboratory and Epidemiology Capacity-United States and Territories, 2015.

Lowe L, Dopson SA, Budd AP.

Health Secur. 2018 Jul/Aug;16(4):239-243. doi: 10.1089/hs.2018.0021. Epub 2018 Aug 10.

PMID:
30096246
13.

Update: Influenza Activity in the United States During the 2017-18 Season and Composition of the 2018-19 Influenza Vaccine.

Garten R, Blanton L, Elal AIA, Alabi N, Barnes J, Biggerstaff M, Brammer L, Budd AP, Burns E, Cummings CN, Davis T, Garg S, Gubareva L, Jang Y, Kniss K, Kramer N, Lindstrom S, Mustaquim D, O'Halloran A, Sessions W, Taylor C, Xu X, Dugan VG, Fry AM, Wentworth DE, Katz J, Jernigan D.

MMWR Morb Mortal Wkly Rep. 2018 Jun 8;67(22):634-642. doi: 10.15585/mmwr.mm6722a4.

14.

Update: Influenza Activity - United States, October 1, 2017-February 3, 2018.

Budd AP, Wentworth DE, Blanton L, Elal AIA, Alabi N, Barnes J, Brammer L, Burns E, Cummings CN, Davis T, Flannery B, Fry AM, Garg S, Garten R, Gubareva L, Jang Y, Kniss K, Kramer N, Lindstrom S, Mustaquim D, O'Halloran A, Olsen SJ, Sessions W, Taylor C, Xu X, Dugan VG, Katz J, Jernigan D.

MMWR Morb Mortal Wkly Rep. 2018 Feb 16;67(6):169-179. doi: 10.15585/mmwr.mm6706a1.

15.

Correction: The Compartmentalized Bacteria of the Planctomycetes-Verrucomicrobia-Chlamydiae Superphylum Have Membrane Coat-Like Proteins.

Santarella-Mellwig R, Franke J, Jaedicke A, Gorjánácz M, Bauer U, Budd A, Mattaj IW, Devos DP.

PLoS Biol. 2018 Feb 14;16(2):e1002620. doi: 10.1371/journal.pbio.1002620. eCollection 2018 Feb.

16.

Peri-operative neurological complications.

Hood R, Budd A, Sorond FA, Hogue CW.

Anaesthesia. 2018 Jan;73 Suppl 1:67-75. doi: 10.1111/anae.14142. Review.

17.

Rapid expansion of pigmentation genes in penaeid shrimp with absolute preservation of function.

Budd AM, Hinton TM, Tonks M, Cheers S, Wade NM.

J Exp Biol. 2017 Nov 15;220(Pt 22):4109-4118. doi: 10.1242/jeb.164988. Epub 2017 Aug 29.

18.

Update: Influenza Activity in the United States During the 2016-17 Season and Composition of the 2017-18 Influenza Vaccine.

Blanton L, Alabi N, Mustaquim D, Taylor C, Kniss K, Kramer N, Budd A, Garg S, Cummings CN, Chung J, Flannery B, Fry AM, Sessions W, Garten R, Xu X, Elal AIA, Gubareva L, Barnes J, Dugan V, Wentworth DE, Burns E, Katz J, Jernigan D, Brammer L.

MMWR Morb Mortal Wkly Rep. 2017 Jun 30;66(25):668-676. doi: 10.15585/mmwr.mm6625a3.

19.

Cervical cancer in women under 25 years of age in Queensland, Australia: To what extent is the diagnosis made by screening cytology?

Morgan EL, Sanday K, Budd A, Hammond IG, Nicklin J.

Aust N Z J Obstet Gynaecol. 2017 Aug;57(4):469-472. doi: 10.1111/ajo.12640. Epub 2017 Jun 4.

PMID:
28580578
20.

Pilot survey of the health of Massachusetts dentists.

Nalliah RP, Budd A, Allareddy V.

J Investig Clin Dent. 2017 Nov;8(4). doi: 10.1111/jicd.12263. Epub 2017 Apr 16.

PMID:
28419770
21.

Update: Influenza Activity - United States, October 2, 2016-February 4, 2017.

Blanton L, Mustaquim D, Alabi N, Kniss K, Kramer N, Budd A, Garg S, Cummings CN, Fry AM, Bresee J, Sessions W, Garten R, Xu X, Elal AI, Gubareva L, Barnes J, Wentworth DE, Burns E, Katz J, Jernigan D, Brammer L.

MMWR Morb Mortal Wkly Rep. 2017 Feb 17;66(6):159-166. doi: 10.15585/mmwr.mm6606a2.

22.

Update: Influenza Activity - United States, October 2-December 17, 2016.

Shang M, Blanton L, Kniss K, Mustaquim D, Alabi N, Barnes S, Budd A, Davlin SL, Kramer N, Garg S, Cummings CN, Flannery B, Fry AM, Grohskopf LA, Olsen SJ, Bresee J, Sessions W, Garten R, Xu X, Elal AI, Gubareva L, Barnes J, Wentworth DE, Burns E, Katz J, Jernigan D, Brammer L.

MMWR Morb Mortal Wkly Rep. 2016 Dec 30;65(50-51):1439-1444. doi: 10.15585/mmwr.mm655051a5.

23.

Empty Niches after Extinctions Increase Population Sizes of Modern Corals.

Prada C, Hanna B, Budd AF, Woodley CM, Schmutz J, Grimwood J, Iglesias-Prieto R, Pandolfi JM, Levitan D, Johnson KG, Knowlton N, Kitano H, DeGiorgio M, Medina M.

Curr Biol. 2016 Dec 5;26(23):3190-3194. doi: 10.1016/j.cub.2016.09.039. Epub 2016 Nov 17.

24.

Effects of cosmetic tongue bifurcation on English fricative production.

Budd A, Schellenberg M, Gick B.

Clin Linguist Phon. 2017;31(4):283-292. doi: 10.1080/02699206.2016.1255782. Epub 2016 Nov 18.

PMID:
27858466
25.

Update: Influenza Activity - United States and Worldwide, May 22-September 10, 2016.

Budd A, Blanton L, Kniss K, Smith S, Mustaquim D, Davlin SL, Kramer N, Flannery B, Fry AM, Grohskopf LA, Olsen SJ, Bresee J, Sessions W, Garten R, Xu X, Elal AI, Gubareva L, Barnes J, Wentworth DE, Burns E, Katz J, Jernigan D, Brammer L.

MMWR Morb Mortal Wkly Rep. 2016 Sep 23;65(37):1008-1014. doi: 10.15585/mmwr.mm6537a5.

26.

Formation of the Isthmus of Panama.

O'Dea A, Lessios HA, Coates AG, Eytan RI, Restrepo-Moreno SA, Cione AL, Collins LS, de Queiroz A, Farris DW, Norris RD, Stallard RF, Woodburne MO, Aguilera O, Aubry MP, Berggren WA, Budd AF, Cozzuol MA, Coppard SE, Duque-Caro H, Finnegan S, Gasparini GM, Grossman EL, Johnson KG, Keigwin LD, Knowlton N, Leigh EG, Leonard-Pingel JS, Marko PB, Pyenson ND, Rachello-Dolmen PG, Soibelzon E, Soibelzon L, Todd JA, Vermeij GJ, Jackson JB.

Sci Adv. 2016 Aug 17;2(8):e1600883. doi: 10.1126/sciadv.1600883. eCollection 2016 Aug. Review.

27.

Histological data in a combined phylogenetic analysis of scleractinian reef corals.

Cordie DR, Budd AF.

J Morphol. 2016 Apr;277(4):494-511. doi: 10.1002/jmor.20514. Epub 2016 Feb 3.

PMID:
26843148
28.

A quick guide for building a successful bioinformatics community.

Budd A, Corpas M, Brazas MD, Fuller JC, Goecks J, Mulder NJ, Michaut M, Ouellette BF, Pawlik A, Blomberg N.

PLoS Comput Biol. 2015 Feb 5;11(2):e1003972. doi: 10.1371/journal.pcbi.1003972. eCollection 2015 Feb.

29.

Ten simple rules for organizing an unconference.

Budd A, Dinkel H, Corpas M, Fuller JC, Rubinat L, Devos DP, Khoueiry PH, Förstner KU, Georgatos F, Rowland F, Sharan M, Binder JX, Grace T, Traphagen K, Gristwood A, Wood NT.

PLoS Comput Biol. 2015 Jan 29;11(1):e1003905. doi: 10.1371/journal.pcbi.1003905. eCollection 2015 Jan. No abstract available.

30.

Persistence and change in community composition of reef corals through present, past, and future climates.

Edmunds PJ, Adjeroud M, Baskett ML, Baums IB, Budd AF, Carpenter RC, Fabina NS, Fan TY, Franklin EC, Gross K, Han X, Jacobson L, Klaus JS, McClanahan TR, O'Leary JK, van Oppen MJ, Pochon X, Putnam HM, Smith TB, Stat M, Sweatman H, van Woesik R, Gates RD.

PLoS One. 2014 Oct 1;9(10):e107525. doi: 10.1371/journal.pone.0107525. eCollection 2014.

31.

The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.

Corpas M, Jimenez RC, Bongcam-Rudloff E, Budd A, Brazas MD, Fernandes PL, Gaeta B, van Gelder C, Korpelainen E, Lewitter F, McGrath A, MacLean D, Palagi PM, Rother K, Taylor J, Via A, Watson M, Schneider MV, Attwood TK.

Bioinformatics. 2015 Jan 1;31(1):140-2. doi: 10.1093/bioinformatics/btu601. Epub 2014 Sep 4.

32.

Cervical screening rates for women vaccinated against human papillomavirus.

Budd AC, Brotherton JM, Gertig DM, Chau T, Drennan KT, Saville M.

Med J Aust. 2014 Sep 1;201(5):279-82.

PMID:
25163380
33.

Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation.

Van Roey K, Uyar B, Weatheritt RJ, Dinkel H, Seiler M, Budd A, Gibson TJ, Davey NE.

Chem Rev. 2014 Jul 9;114(13):6733-78. doi: 10.1021/cr400585q. Epub 2014 Jun 13. Review. No abstract available.

PMID:
24926813
34.

Methicillin-resistant Staphylococcus aureus transmission and infections in a neonatal intensive care unit despite active surveillance cultures and decolonization: challenges for infection prevention.

Popoola VO, Budd A, Wittig SM, Ross T, Aucott SW, Perl TM, Carroll KC, Milstone AM.

Infect Control Hosp Epidemiol. 2014 Apr;35(4):412-8. doi: 10.1086/675594.

35.

The eukaryotic linear motif resource ELM: 10 years and counting.

Dinkel H, Van Roey K, Michael S, Davey NE, Weatheritt RJ, Born D, Speck T, Krüger D, Grebnev G, Kuban M, Strumillo M, Uyar B, Budd A, Altenberg B, Seiler M, Chemes LB, Glavina J, Sánchez IE, Diella F, Gibson TJ.

Nucleic Acids Res. 2014 Jan;42(Database issue):D259-66. doi: 10.1093/nar/gkt1047. Epub 2013 Nov 7.

36.

Impact of a population-based HPV vaccination program on cervical abnormalities: a data linkage study.

Gertig DM, Brotherton JM, Budd AC, Drennan K, Chappell G, Saville AM.

BMC Med. 2013 Oct 22;11:227. doi: 10.1186/1741-7015-11-227.

37.

Best practices in bioinformatics training for life scientists.

Via A, Blicher T, Bongcam-Rudloff E, Brazas MD, Brooksbank C, Budd A, De Las Rivas J, Dreyer J, Fernandes PL, van Gelder C, Jacob J, Jimenez RC, Loveland J, Moran F, Mulder N, Nyrönen T, Rother K, Schneider MV, Attwood TK.

Brief Bioinform. 2013 Sep;14(5):528-37. doi: 10.1093/bib/bbt043. Epub 2013 Jun 25.

38.

iAnn: an event sharing platform for the life sciences.

Jimenez RC, Albar JP, Bhak J, Blatter MC, Blicher T, Brazas MD, Brooksbank C, Budd A, De Las Rivas J, Dreyer J, van Driel MA, Dunn MJ, Fernandes PL, van Gelder CW, Hermjakob H, Ioannidis V, Judge DP, Kahlem P, Korpelainen E, Kraus HJ, Loveland J, Mayer C, McDowall J, Moran F, Mulder N, Nyronen T, Rother K, Salazar GA, Schneider R, Via A, Villaveces JM, Yu P, Schneider MV, Attwood TK, Corpas M.

Bioinformatics. 2013 Aug 1;29(15):1919-21. doi: 10.1093/bioinformatics/btt306. Epub 2013 Jun 5.

39.

Biggest challenges in bioinformatics.

Fuller JC, Khoueiry P, Dinkel H, Forslund K, Stamatakis A, Barry J, Budd A, Soldatos TG, Linssen K, Rajput AM; HUB Participants.

EMBO Rep. 2013 Apr;14(4):302-4. doi: 10.1038/embor.2013.34. Epub 2013 Mar 15.

40.
41.

Implementation of a central line maintenance care bundle in hospitalized pediatric oncology patients.

Rinke ML, Chen AR, Bundy DG, Colantuoni E, Fratino L, Drucis KM, Panton SY, Kokoszka M, Budd AP, Milstone AM, Miller MR.

Pediatrics. 2012 Oct;130(4):e996-e1004. doi: 10.1542/peds.2012-0295. Epub 2012 Sep 3.

42.

Molecules and fossils reveal punctuated diversification in Caribbean "faviid" corals.

Schwartz SA, Budd AF, Carlon DB.

BMC Evol Biol. 2012 Jul 25;12:123. doi: 10.1186/1471-2148-12-123.

43.

Diversity of genome organisation.

Budd A.

Methods Mol Biol. 2012;855:51-76. doi: 10.1007/978-1-61779-582-4_2. Review.

PMID:
22407705
44.

Introduction to genome biology: features, processes, and structures.

Budd A.

Methods Mol Biol. 2012;855:3-49. doi: 10.1007/978-1-61779-582-4_1. Review.

PMID:
22407704
45.

An outbreak of human parainfluenza virus 3 infection in an outpatient hematopoietic stem cell transplantation clinic.

Sydnor ER, Greer A, Budd AP, Pehar M, Munshaw S, Neofytos D, Perl TM, Valsamakis A.

Am J Infect Control. 2012 Sep;40(7):601-5. doi: 10.1016/j.ajic.2011.11.011. Epub 2012 Mar 8.

PMID:
22405748
46.

Hosts of the Plio-Pleistocene past reflect modern-day coral vulnerability.

van Woesik R, Franklin EC, O'Leary J, McClanahan TR, Klaus JS, Budd AF.

Proc Biol Sci. 2012 Jun 22;279(1737):2448-56. doi: 10.1098/rspb.2011.2621. Epub 2012 Feb 15.

47.

The quantitative genetics of incipient speciation: heritability and genetic correlations of skeletal traits in populations of diverging Favia fragum ecomorphs.

Carlon DB, Budd AF, Lippé C, Andrew RL.

Evolution. 2011 Dec;65(12):3428-47. doi: 10.1111/j.1558-5646.2011.01389.x. Epub 2011 Aug 23.

PMID:
22133216
48.

Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers.

Schneider MV, Walter P, Blatter MC, Watson J, Brazas MD, Rother K, Budd A, Via A, van Gelder CW, Jacob J, Fernandes P, Nyrönen TH, De Las Rivas J, Blicher T, Jimenez RC, Loveland J, McDowall J, Jones P, Vaughan BW, Lopez R, Attwood TK, Brooksbank C.

Brief Bioinform. 2012 May;13(3):383-9. doi: 10.1093/bib/bbr064. Epub 2011 Nov 22. Review.

49.

ELM--the database of eukaryotic linear motifs.

Dinkel H, Michael S, Weatheritt RJ, Davey NE, Van Roey K, Altenberg B, Toedt G, Uyar B, Seiler M, Budd A, Jödicke L, Dammert MA, Schroeter C, Hammer M, Schmidt T, Jehl P, McGuigan C, Dymecka M, Chica C, Luck K, Via A, Chatr-Aryamontri A, Haslam N, Grebnev G, Edwards RJ, Steinmetz MO, Meiselbach H, Diella F, Gibson TJ.

Nucleic Acids Res. 2012 Jan;40(Database issue):D242-51. doi: 10.1093/nar/gkr1064. Epub 2011 Nov 21.

50.

Attributes of short linear motifs.

Davey NE, Van Roey K, Weatheritt RJ, Toedt G, Uyar B, Altenberg B, Budd A, Diella F, Dinkel H, Gibson TJ.

Mol Biosyst. 2012 Jan;8(1):268-81. doi: 10.1039/c1mb05231d. Epub 2011 Sep 12.

PMID:
21909575

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