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Items: 1 to 50 of 108

1.

Gastroprotective effects of oleuropein and thymol on indomethacin-induced gastric ulcer in Sprague-Dawley rats.

Koc K, Cerig S, Ucar S, Colak S, Bakir M, Erol HS, Yildirim S, Hosseinigouzdagani M, Simsek Ozek N, Aysin F, Fehim Kocpinar E, Budak H, Geyikoglu F.

Drug Chem Toxicol. 2018 Nov 14:1-13. doi: 10.1080/01480545.2018.1530261. [Epub ahead of print]

PMID:
30426792
2.

Genome sequence of the wheat stem sawfly, Cephus cinctus, representing an early-branching lineage of the Hymenoptera, illuminates evolution of hymenopteran chemoreceptors.

Robertson HM, Waterhouse RM, Walden KKO, Ruzzante L, Reijnders MJMF, Coates BS, Legeai F, Gress JC, Biyiklioglu S, Weaver DK, Wanner KW, Budak H.

Genome Biol Evol. 2018 Oct 18. doi: 10.1093/gbe/evy232. [Epub ahead of print]

PMID:
30335145
3.

A Comparison of the Inhibitory Effects of Anti-Cancer Drugs on Thioredoxin Reductase and Glutathione S-Transferase in Rat Liver.

Ozgencli I, Kilic D, Guller U, Ciftci M, Kufrevioglu OI, Budak H.

Anticancer Agents Med Chem. 2018 Sep 9. doi: 10.2174/1871520618666180910093335. [Epub ahead of print]

PMID:
30198440
4.

Shifting the limits in wheat research and breeding using a fully annotated reference genome.

International Wheat Genome Sequencing Consortium (IWGSC); IWGSC RefSeq principal investigators:, Appels R, Eversole K, Feuillet C, Keller B, Rogers J, Stein N; IWGSC whole-genome assembly principal investigators:, Pozniak CJ, Stein N, Choulet F, Distelfeld A, Eversole K, Poland J, Rogers J, Ronen G, Sharpe AG; Whole-genome sequencing and assembly:, Pozniak C, Ronen G, Stein N, Barad O, Baruch K, Choulet F, Keeble-Gagnère G, Mascher M, Sharpe AG, Ben-Zvi G, Josselin AA; Hi-C data-based scaffolding:, Stein N, Mascher M, Himmelbach A; Whole-genome assembly quality control and analyses:, Choulet F, Keeble-Gagnère G, Mascher M, Rogers J, Balfourier F, Gutierrez-Gonzalez J, Hayden M, Josselin AA, Koh C, Muehlbauer G, Pasam RK, Paux E, Pozniak CJ, Rigault P, Sharpe AG, Tibbits J, Tiwari V; Pseudomolecule assembly:, Choulet F, Keeble-Gagnère G, Mascher M, Josselin AA, Rogers J; RefSeq genome structure and gene analyses:, Spannagl M, Choulet F, Lang D, Gundlach H, Haberer G, Keeble-Gagnère G, Mayer KFX, Ormanbekova D, Paux E, Prade V, Šimková H, Wicker T; Automated annotation:, Choulet F, Spannagl M, Swarbreck D, Rimbert H, Felder M, Guilhot N, Gundlach H, Haberer G, Kaithakottil G, Keilwagen J, Lang D, Leroy P, Lux T, Mayer KFX, Twardziok S, Venturini L; Manual gene curation:, Appels R, Rimbert H, Choulet F, Juhász A, Keeble-Gagnère G; Subgenome comparative analyses:, Choulet F, Spannagl M, Lang D, Abrouk M, Haberer G, Keeble-Gagnère G, Mayer KFX, Wicker T; Transposable elements:, Choulet F, Wicker T, Gundlach H, Lang D, Spannagl M; Phylogenomic analyses:, Lang D, Spannagl M, Appels R, Fischer I; Transcriptome analyses and RNA-seq data:, Uauy C, Borrill P, Ramirez-Gonzalez RH, Appels R, Arnaud D, Chalabi S, Chalhoub B, Choulet F, Cory A, Datla R, Davey MW, Hayden M, Jacobs J, Lang D, Robinson SJ, Spannagl M, Steuernagel B, Tibbits J, Tiwari V, van Ex F, Wulff BBH; Whole-genome methylome:, Pozniak CJ, Robinson SJ, Sharpe AG, Cory A; Histone mark analyses:, Benhamed M, Paux E, Bendahmane A, Concia L, Latrasse D; BAC chromosome MTP IWGSC–Bayer Whole-Genome Profiling (WGP) tags:, Rogers J, Jacobs J, Alaux M, Appels R, Bartoš J, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, Letellier T, Olsen OA, Šimková H, Singh K, Valárik M, van der Vossen E, Vautrin S, Weining S; Chromosome LTC mapping and physical mapping quality control:, Korol A, Frenkel Z, Fahima T, Glikson V, Raats D, Rogers J; RH mapping:, Tiwari V, Gill B, Paux E, Poland J; Optical mapping:, Doležel J, Číhalíková J, Šimková H, Toegelová H, Vrána J; Recombination analyses:, Sourdille P, Darrier B; Gene family analyses:, Appels R, Spannagl M, Lang D, Fischer I, Ormanbekova D, Prade V; CBF gene family:, Barabaschi D, Cattivelli L; Dehydrin gene family:, Hernandez P, Galvez S, Budak H; NLR gene family:, Steuernagel B, Jones JDG, Witek K, Wulff BBH, Yu G; PPR gene family:, Small I, Melonek J, Zhou R; Prolamin gene family:, Juhász A, Belova T, Appels R, Olsen OA; WAK gene family:, Kanyuka K, King R; Stem solidness (SSt1) QTL team:, Nilsen K, Walkowiak S, Pozniak CJ, Cuthbert R, Datla R, Knox R, Wiebe K, Xiang D; Flowering locus C (FLC) gene team:, Rohde A, Golds T; Genome size analysis:, Doležel J, Čížková J, Tibbits J; MicroRNA and tRNA annotation:, Budak H, Akpinar BA, Biyiklioglu S; Genetic maps and mapping:, Muehlbauer G, Poland J, Gao L, Gutierrez-Gonzalez J, N'Daiye A; BAC libraries and chromosome sorting:, Doležel J, Šimková H, Číhalíková J, Kubaláková M, Šafář J, Vrána J; BAC pooling, BAC library repository, and access:, Berges H, Bellec A, Vautrin S; IWGSC sequence and data repository and access:, Alaux M, Alfama F, Adam-Blondon AF, Flores R, Guerche C, Letellier T, Loaec M, Quesneville H; Physical maps and BAC-based sequences:; 1A BAC sequencing and assembly:, Pozniak CJ, Sharpe AG, Walkowiak S, Budak H, Condie J, Ens J, Koh C, Maclachlan R, Tan Y, Wicker T; 1B BAC sequencing and assembly:, Choulet F, Paux E, Alberti A, Aury JM, Balfourier F, Barbe V, Couloux A, Cruaud C, Labadie K, Mangenot S, Wincker P; 1D, 4D, and 6D physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 2AL physical mapping:, Singh K, Chhuneja P, Gupta OP, Jindal S, Kaur P, Malik P, Sharma P, Yadav B; 2AS physical mapping:, Singh NK, Khurana J, Chaudhary C, Khurana P, Kumar V, Mahato A, Mathur S, Sevanthi A, Sharma N, Tomar RS; 2B, 2D, 4B, 5BL, and 5DL IWGSC–Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers J, Jacobs J, Alaux M, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, van der Vossen E, Vautrin S; 3AL physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 3DS physical mapping and BAC sequencing and assembly:, Bartoš J, Holušová K, Plíhal O; 3DL BAC sequencing and assembly:, Clark MD, Heavens D, Kettleborough G, Wright J; 4A physical mapping, BAC sequencing, assembly, and annotation:, Valárik M, Abrouk M, Balcárková B, Holušová K, Hu Y, Luo M; 5BS BAC sequencing and assembly:, Salina E, Ravin N, Skryabin K, Beletsky A, Kadnikov V, Mardanov A, Nesterov M, Rakitin A, Sergeeva E; 6B BAC sequencing and assembly:, Handa H, Kanamori H, Katagiri S, Kobayashi F, Nasuda S, Tanaka T, Wu J; 7A physical mapping and BAC sequencing:, Appels R, Hayden M, Keeble-Gagnère G, Rigault P, Tibbits J; 7B physical mapping, BAC sequencing, and assembly:, Olsen OA, Belova T, Cattonaro F, Jiumeng M, Kugler K, Mayer KFX, Pfeifer M, Sandve S, Xun X, Zhan B; 7DS BAC sequencing and assembly:, Šimková H, Abrouk M, Batley J, Bayer PE, Edwards D, Hayashi S, Toegelová H, Tulpová Z, Visendi P; 7DL physical mapping and BAC sequencing:, Weining S, Cui L, Du X, Feng K, Nie X, Tong W, Wang L; Figures:, Borrill P, Gundlach H, Galvez S, Kaithakottil G, Lang D, Lux T, Mascher M, Ormanbekova D, Prade V, Ramirez-Gonzalez RH, Spannagl M, Stein N, Uauy C, Venturini L; Manuscript writing team:, Stein N, Appels R, Eversole K, Rogers J, Borrill P, Cattivelli L, Choulet F, Hernandez P, Kanyuka K, Lang D, Mascher M, Nilsen K, Paux E, Pozniak CJ, Ramirez-Gonzalez RH, Šimková H, Small I, Spannagl M, Swarbreck D, Uauy C.

Science. 2018 Aug 17;361(6403). pii: eaar7191. doi: 10.1126/science.aar7191. Epub 2018 Aug 16.

PMID:
30115783
5.

Plant Small Non-coding RNAs and Their Roles in Biotic Stresses.

Brant EJ, Budak H.

Front Plant Sci. 2018 Jul 20;9:1038. doi: 10.3389/fpls.2018.01038. eCollection 2018. Review.

6.

Correction to: A large-scale multiomics analysis of wheat stem solidness and the wheat stem sawfly feeding response, and syntenic associations in barley, Brachypodium, and rice.

Biyiklioglu S, Alptekin B, Ani Akpinar B, Varella AC, Hofland ML, Weaver DK, Bothner B, Budak H.

Funct Integr Genomics. 2018 Sep;18(5):611. doi: 10.1007/s10142-018-0627-7.

PMID:
29982858
7.

Amoxicillin and gentamicin antibiotics treatment adversely influence the fertility and morphology through decreasing the Dazl gene expression level and increasing the oxidative stress.

Karaman M, Budak H, Çiftci M.

Arch Physiol Biochem. 2018 Jun 20:1-9. doi: 10.1080/13813455.2018.1482354. [Epub ahead of print]

PMID:
29925282
8.

CRISPR/Cas9 in plants: at play in the genome and at work for crop improvement.

Hussain B, Lucas SJ, Budak H.

Brief Funct Genomics. 2018 Sep 27;17(5):319-328. doi: 10.1093/bfgp/ely016.

PMID:
29912293
9.

Lichen acids may be used as a potential drug for cancer therapy; by inhibiting mitochondrial thioredoxin reductase purified from rat lung.

Ozgencli I, Budak H, Ciftci M, Anar M.

Anticancer Agents Med Chem. 2018 May 24. doi: 10.2174/1871520618666180525095520. [Epub ahead of print]

PMID:
29793415
10.

Chromosome-based survey sequencing reveals the genome organization of wild wheat progenitor Triticum dicoccoides.

Akpinar BA, Biyiklioglu S, Alptekin B, Havránková M, Vrána J, Doležel J, Distelfeld A, Hernandez P; IWGSC, Budak H.

Plant Biotechnol J. 2018 Dec;16(12):2077-2087. doi: 10.1111/pbi.12940. Epub 2018 Jun 13.

11.

A novel therapeutics agent: antioxidant effects of hydroxylfasudil on rat kidney and liver tissues in a protamine sulphate-induced cystitis rat model; preliminary results.

Bozkurt A, Budak H, Erol HS, Can S, Mercantepe T, Akin Y, Ozbey I, Cankaya M, Halici MB, Coban TA.

Artif Cells Nanomed Biotechnol. 2018 Mar 9:1-6. doi: 10.1080/21691401.2018.1449120. [Epub ahead of print]

PMID:
29523028
12.

A large-scale multiomics analysis of wheat stem solidness and the wheat stem sawfly feeding response, and syntenic associations in barley, Brachypodium, and rice.

Biyiklioglu S, Alptekin B, Akpinar BA, Varella AC, Hofland ML, Weaver DK, Bothner B, Budak H.

Funct Integr Genomics. 2018 May;18(3):241-259. doi: 10.1007/s10142-017-0585-5. Epub 2018 Feb 22. Erratum in: Funct Integr Genomics. 2018 Sep;18(5):611.

13.

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.

Gordon SP, Contreras-Moreira B, Woods DP, Des Marais DL, Burgess D, Shu S, Stritt C, Roulin AC, Schackwitz W, Tyler L, Martin J, Lipzen A, Dochy N, Phillips J, Barry K, Geuten K, Budak H, Juenger TE, Amasino R, Caicedo AL, Goodstein D, Davidson P, Mur LAJ, Figueroa M, Freeling M, Catalan P, Vogel JP.

Nat Commun. 2017 Dec 19;8(1):2184. doi: 10.1038/s41467-017-02292-8.

14.

Comparative metabolite profiling of drought stress in roots and leaves of seven Triticeae species.

Ullah N, Yüce M, Neslihan Öztürk Gökçe Z, Budak H.

BMC Genomics. 2017 Dec 15;18(1):969. doi: 10.1186/s12864-017-4321-2.

15.

Mapping QTLs conferring salt tolerance and micronutrient concentrations at seedling stagein wheat.

Hussain B, Lucas SJ, Ozturk L, Budak H.

Sci Rep. 2017 Nov 15;7(1):15662. doi: 10.1038/s41598-017-15726-6.

16.

Application of Tissue Culture and Transformation Techniques in Model Species Brachypodium distachyon.

Sogutmaz Ozdemir B, Budak H.

Methods Mol Biol. 2018;1667:289-310. doi: 10.1007/978-1-4939-7278-4_18.

PMID:
29039016
17.

Assembly and Annotation of Transcriptome Provided Evidence of miRNA Mobility between Wheat and Wheat Stem Sawfly.

Cagirici HB, Biyiklioglu S, Budak H.

Front Plant Sci. 2017 Sep 26;8:1653. doi: 10.3389/fpls.2017.01653. eCollection 2017.

18.

CRISPR/Cas9 genome editing in wheat.

Kim D, Alptekin B, Budak H.

Funct Integr Genomics. 2018 Jan;18(1):31-41. doi: 10.1007/s10142-017-0572-x. Epub 2017 Sep 16.

PMID:
28918562
19.

RNA Sequencing and Co-expressed Long Non-coding RNA in Modern and Wild Wheats.

Cagirici HB, Alptekin B, Budak H.

Sci Rep. 2017 Sep 6;7(1):10670. doi: 10.1038/s41598-017-11170-8.

20.

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication.

Avni R, Nave M, Barad O, Baruch K, Twardziok SO, Gundlach H, Hale I, Mascher M, Spannagl M, Wiebe K, Jordan KW, Golan G, Deek J, Ben-Zvi B, Ben-Zvi G, Himmelbach A, MacLachlan RP, Sharpe AG, Fritz A, Ben-David R, Budak H, Fahima T, Korol A, Faris JD, Hernandez A, Mikel MA, Levy AA, Steffenson B, Maccaferri M, Tuberosa R, Cattivelli L, Faccioli P, Ceriotti A, Kashkush K, Pourkheirandish M, Komatsuda T, Eilam T, Sela H, Sharon A, Ohad N, Chamovitz DA, Mayer KFX, Stein N, Ronen G, Peleg Z, Pozniak CJ, Akhunov ED, Distelfeld A.

Science. 2017 Jul 7;357(6346):93-97. doi: 10.1126/science.aan0032.

PMID:
28684525
21.

High-throughput SNP genotyping of modern and wild emmer wheat for yield and root morphology using a combined association and linkage analysis.

Lucas SJ, Salantur A, Yazar S, Budak H.

Funct Integr Genomics. 2017 Nov;17(6):667-685. doi: 10.1007/s10142-017-0563-y. Epub 2017 May 26.

PMID:
28550605
22.

Intensive herbicide use has selected for constitutively elevated levels of stress-responsive mRNAs and proteins in multiple herbicide-resistant Avena fatua L.

Keith BK, Burns EE, Bothner B, Carey CC, Mazurie AJ, Hilmer JK, Biyiklioglu S, Budak H, Dyer WE.

Pest Manag Sci. 2017 Nov;73(11):2267-2281. doi: 10.1002/ps.4605. Epub 2017 Aug 18.

PMID:
28485049
23.

MicroRNAs in model and complex organisms.

Budak H, Zhang B.

Funct Integr Genomics. 2017 May;17(2-3):121-124. doi: 10.1007/s10142-017-0544-1.

PMID:
28220336
24.

Microfabricated tools for quantitative plant biology.

Elitaş M, Yüce M, Budak H.

Analyst. 2017 Mar 13;142(6):835-848. doi: 10.1039/c6an02643e.

PMID:
28197569
25.

A Comprehensive Prescription for Plant miRNA Identification.

Alptekin B, Akpinar BA, Budak H.

Front Plant Sci. 2017 Jan 24;7:2058. doi: 10.3389/fpls.2016.02058. eCollection 2016.

26.

A large-scale chromosome-specific SNP discovery guideline.

Akpinar BA, Lucas S, Budak H.

Funct Integr Genomics. 2017 Jan;17(1):97-105. doi: 10.1007/s10142-016-0536-6. Epub 2016 Nov 29.

PMID:
27900504
27.

Abiotic stress miRNomes in the Triticeae.

Alptekin B, Langridge P, Budak H.

Funct Integr Genomics. 2017 May;17(2-3):145-170. doi: 10.1007/s10142-016-0525-9. Epub 2016 Sep 24. Review.

28.

Dissecting miRNAs in Wheat D Genome Progenitor, Aegilops tauschii.

Akpinar BA, Budak H.

Front Plant Sci. 2016 May 4;7:606. doi: 10.3389/fpls.2016.00606. eCollection 2016.

29.

Lichen acids may be used as a potential drug for cancer therapy; by inhibiting mitochondrial thioredoxin reductase purified from rat lung.

Ozgencli I, Budak H, Ciftci M, Anar M.

Anticancer Agents Med Chem. 2016 May 3. [Epub ahead of print]

PMID:
27141875
30.

In silico search and biological validation of microRNAs related to drought response in peach and almond.

Esmaeili F, Shiran B, Fallahi H, Mirakhorli N, Budak H, Martínez-Gómez P.

Funct Integr Genomics. 2017 May;17(2-3):189-201. doi: 10.1007/s10142-016-0488-x. Epub 2016 Apr 11.

PMID:
27068847
31.

Wheat miRNA ancestors: evident by transcriptome analysis of A, B, and D genome donors.

Alptekin B, Budak H.

Funct Integr Genomics. 2017 May;17(2-3):171-187. doi: 10.1007/s10142-016-0487-y. Epub 2016 Mar 31.

PMID:
27032785
32.

Dual-excitation upconverting nanoparticle and quantum dot aptasensor for multiplexed food pathogen detection.

Kurt H, Yüce M, Hussain B, Budak H.

Biosens Bioelectron. 2016 Jul 15;81:280-286. doi: 10.1016/j.bios.2016.03.005. Epub 2016 Mar 4.

PMID:
26971274
33.

Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).

Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K, Adhihetty PJ, Adler SG, Agam G, Agarwal R, Aghi MK, Agnello M, Agostinis P, Aguilar PV, Aguirre-Ghiso J, Airoldi EM, Ait-Si-Ali S, Akematsu T, Akporiaye ET, Al-Rubeai M, Albaiceta GM, Albanese C, Albani D, Albert ML, Aldudo J, Algül H, Alirezaei M, Alloza I, Almasan A, Almonte-Beceril M, Alnemri ES, Alonso C, Altan-Bonnet N, Altieri DC, Alvarez S, Alvarez-Erviti L, Alves S, Amadoro G, Amano A, Amantini C, Ambrosio S, Amelio I, Amer AO, Amessou M, Amon A, An Z, Anania FA, Andersen SU, Andley UP, Andreadi CK, Andrieu-Abadie N, Anel A, Ann DK, Anoopkumar-Dukie S, Antonioli M, Aoki H, Apostolova N, Aquila S, Aquilano K, Araki K, Arama E, Aranda A, Araya J, Arcaro A, Arias E, Arimoto H, Ariosa AR, Armstrong JL, Arnould T, Arsov I, Asanuma K, Askanas V, Asselin E, Atarashi R, Atherton SS, Atkin JD, Attardi LD, Auberger P, Auburger G, Aurelian L, Autelli R, Avagliano L, Avantaggiati ML, Avrahami L, Awale S, Azad N, Bachetti T, Backer JM, Bae DH, Bae JS, Bae ON, Bae SH, Baehrecke EH, Baek SH, Baghdiguian S, Bagniewska-Zadworna A, Bai H, Bai J, Bai XY, Bailly Y, Balaji KN, Balduini W, Ballabio A, Balzan R, Banerjee R, Bánhegyi G, Bao H, Barbeau B, Barrachina MD, Barreiro E, Bartel B, Bartolomé A, Bassham DC, Bassi MT, Bast RC Jr, Basu A, Batista MT, Batoko H, Battino M, Bauckman K, Baumgarner BL, Bayer KU, Beale R, Beaulieu JF, Beck GR Jr, Becker C, Beckham JD, Bédard PA, Bednarski PJ, Begley TJ, Behl C, Behrends C, Behrens GM, Behrns KE, Bejarano E, Belaid A, Belleudi F, Bénard G, Berchem G, Bergamaschi D, Bergami M, Berkhout B, Berliocchi L, Bernard A, Bernard M, Bernassola F, Bertolotti A, Bess AS, Besteiro S, Bettuzzi S, Bhalla S, Bhattacharyya S, Bhutia SK, Biagosch C, Bianchi MW, Biard-Piechaczyk M, Billes V, Bincoletto C, Bingol B, Bird SW, Bitoun M, Bjedov I, Blackstone C, Blanc L, Blanco GA, Blomhoff HK, Boada-Romero E, Böckler S, Boes M, Boesze-Battaglia K, Boise LH, Bolino A, Boman A, Bonaldo P, Bordi M, Bosch J, Botana LM, Botti J, Bou G, Bouché M, Bouchecareilh M, Boucher MJ, Boulton ME, Bouret SG, Boya P, Boyer-Guittaut M, Bozhkov PV, Brady N, Braga VM, Brancolini C, Braus GH, Bravo-San Pedro JM, Brennan LA, Bresnick EH, Brest P, Bridges D, Bringer MA, Brini M, Brito GC, Brodin B, Brookes PS, Brown EJ, Brown K, Broxmeyer HE, Bruhat A, Brum PC, Brumell JH, Brunetti-Pierri N, Bryson-Richardson RJ, Buch S, Buchan AM, Budak H, Bulavin DV, Bultman SJ, Bultynck G, Bumbasirevic V, Burelle Y, Burke RE, Burmeister M, Bütikofer P, Caberlotto L, Cadwell K, Cahova M, Cai D, Cai J, Cai Q, Calatayud S, Camougrand N, Campanella M, Campbell GR, Campbell M, Campello S, Candau R, Caniggia I, Cantoni L, Cao L, Caplan AB, Caraglia M, Cardinali C, Cardoso SM, Carew JS, Carleton LA, Carlin CR, Carloni S, Carlsson SR, Carmona-Gutierrez D, Carneiro LA, Carnevali O, Carra S, Carrier A, Carroll B, Casas C, Casas J, Cassinelli G, Castets P, 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Autophagy. 2016;12(1):1-222. doi: 10.1080/15548627.2015.1100356. No abstract available. Erratum in: Autophagy. 2016;12(2):443. Selliez, Iban [corrected to Seiliez, Iban].

34.

From Genetics to Functional Genomics: Improvement in Drought Signaling and Tolerance in Wheat.

Budak H, Hussain B, Khan Z, Ozturk NZ, Ullah N.

Front Plant Sci. 2015 Nov 19;6:1012. doi: 10.3389/fpls.2015.01012. eCollection 2015. Review.

35.

Retrorectal Tumors in Adults: A 10-Year Retrospective Study.

Oguz A, Böyük A, Turkoglu A, Goya C, Alabalık U, Teke F, Budak H, Gumuş M.

Int Surg. 2015 Jul;100(7-8):1177-84. doi: 10.9738/INTSURG-D-15-00068.1.

PMID:
26595490
36.

Differential expression of seven conserved microRNAs in response to abiotic stress and their regulatory network in Helianthus annuus.

Ebrahimi Khaksefidi R, Mirlohi S, Khalaji F, Fakhari Z, Shiran B, Fallahi H, Rafiei F, Budak H, Ebrahimie E.

Front Plant Sci. 2015 Sep 17;6:741. doi: 10.3389/fpls.2015.00741. eCollection 2015.

37.

Identification of the VERNALIZATION 4 gene reveals the origin of spring growth habit in ancient wheats from South Asia.

Kippes N, Debernardi JM, Vasquez-Gross HA, Akpinar BA, Budak H, Kato K, Chao S, Akhunov E, Dubcovsky J.

Proc Natl Acad Sci U S A. 2015 Sep 29;112(39):E5401-10. doi: 10.1073/pnas.1514883112. Epub 2015 Aug 31.

38.

Looking back at the past and projecting ahead to the future.

Budak H.

Funct Integr Genomics. 2015 Sep;15(5):509. doi: 10.1007/s10142-015-0455-y. No abstract available.

PMID:
26231512
39.

Root precursors of microRNAs in wild emmer and modern wheats show major differences in response to drought stress.

Akpinar BA, Kantar M, Budak H.

Funct Integr Genomics. 2015 Sep;15(5):587-98. doi: 10.1007/s10142-015-0453-0. Epub 2015 Jul 15.

PMID:
26174050
40.

MicroRNA nomenclature and the need for a revised naming prescription.

Budak H, Bulut R, Kantar M, Alptekin B.

Brief Funct Genomics. 2016 Jan;15(1):65-71. doi: 10.1093/bfgp/elv026. Epub 2015 Jul 6. Review.

PMID:
26148500
41.

Trends in aptamer selection methods and applications.

Yüce M, Ullah N, Budak H.

Analyst. 2015 Aug 21;140(16):5379-99. doi: 10.1039/c5an00954e. Review.

PMID:
26114391
42.

Plant miRNAs: biogenesis, organization and origins.

Budak H, Akpinar BA.

Funct Integr Genomics. 2015 Sep;15(5):523-31. doi: 10.1007/s10142-015-0451-2. Epub 2015 Jun 26. Review.

PMID:
26113396
43.

A compendium of expression patterns of cholesterol biosynthetic enzymes in the mouse embryo.

Şişecioğlu M, Budak H, Geffers L, Çankaya M, Çiftci M, Thaller C, Eichele G, Küfrevioğlu Öİ, Özdemir H.

J Lipid Res. 2015 Aug;56(8):1551-9. doi: 10.1194/jlr.M059634. Epub 2015 Jun 24.

44.

Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides.

Akpinar BA, Yuce M, Lucas S, Vrána J, Burešová V, Doležel J, Budak H.

Sci Rep. 2015 Jun 18;5:10763. doi: 10.1038/srep10763.

45.

The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements.

Akpinar BA, Magni F, Yuce M, Lucas SJ, Šimková H, Šafář J, Vautrin S, Bergès H, Cattonaro F, Doležel J, Budak H.

BMC Genomics. 2015 Jun 13;16:453. doi: 10.1186/s12864-015-1641-y.

46.
47.

Stress responsive miRNAs and isomiRs in cereals.

Budak H, Kantar M, Bulut R, Akpinar BA.

Plant Sci. 2015 Jun;235:1-13. doi: 10.1016/j.plantsci.2015.02.008. Epub 2015 Feb 20. Review.

PMID:
25900561
48.

Sequencing chromosome 5D of Aegilops tauschii and comparison with its allopolyploid descendant bread wheat (Triticum aestivum).

Akpinar BA, Lucas SJ, Vrána J, Doležel J, Budak H.

Plant Biotechnol J. 2015 Aug;13(6):740-52. doi: 10.1111/pbi.12302. Epub 2014 Dec 16.

49.

Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications.

Lucas SJ, Akpınar BA, Šimková H, Kubaláková M, Doležel J, Budak H.

BMC Genomics. 2014 Dec 9;15:1080. doi: 10.1186/1471-2164-15-1080.

50.

Stimulation of gene expression and activity of antioxidant related enzyme in Sprague Dawley rat kidney induced by long-term iron toxicity.

Budak H, Kocpinar EF, Gonul N, Ceylan H, Erol HS, Erdogan O.

Comp Biochem Physiol C Toxicol Pharmacol. 2014 Nov;166:44-50. doi: 10.1016/j.cbpc.2014.07.002. Epub 2014 Jul 16.

PMID:
25038477

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