Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 56

1.

Data Analysis for DNA Stable Isotope Probing Experiments Using Multiple Window High-Resolution SIP.

Barnett SE, Youngblut ND, Buckley DH.

Methods Mol Biol. 2019;2046:109-128. doi: 10.1007/978-1-4939-9721-3_9.

PMID:
31407300
2.

Fitness Cost of Aflatoxin Production in Aspergillus flavus When Competing with Soil Microbes Could Maintain Balancing Selection.

Drott MT, Debenport T, Higgins SA, Buckley DH, Milgroom MG.

MBio. 2019 Feb 19;10(1). pii: e02782-18. doi: 10.1128/mBio.02782-18.

3.

Factors governing extracellular DNA degradation dynamics in soil.

Sirois SH, Buckley DH.

Environ Microbiol Rep. 2019 Apr;11(2):173-184. doi: 10.1111/1758-2229.12725. Epub 2018 Dec 21.

PMID:
30507072
4.

The Microbial Landscape of Sea Stars and the Anatomical and Interspecies Variability of Their Microbiome.

Jackson EW, Pepe-Ranney C, Debenport SJ, Buckley DH, Hewson I.

Front Microbiol. 2018 Aug 13;9:1829. doi: 10.3389/fmicb.2018.01829. eCollection 2018.

5.

Phylogenetic conservatism of thermal traits explains dispersal limitation and genomic differentiation of Streptomyces sister-taxa.

Choudoir MJ, Buckley DH.

ISME J. 2018 Sep;12(9):2176-2186. doi: 10.1038/s41396-018-0180-3. Epub 2018 Jun 7.

PMID:
29880909
6.

SIPSim: A Modeling Toolkit to Predict Accuracy and Aid Design of DNA-SIP Experiments.

Youngblut ND, Barnett SE, Buckley DH.

Front Microbiol. 2018 Mar 28;9:570. doi: 10.3389/fmicb.2018.00570. eCollection 2018.

7.

Diversification of Secondary Metabolite Biosynthetic Gene Clusters Coincides with Lineage Divergence in Streptomyces.

Choudoir MJ, Pepe-Ranney C, Buckley DH.

Antibiotics (Basel). 2018 Feb 13;7(1). pii: E12. doi: 10.3390/antibiotics7010012.

8.

Plant Phylogeny and Life History Shape Rhizosphere Bacterial Microbiome of Summer Annuals in an Agricultural Field.

Emmett BD, Youngblut ND, Buckley DH, Drinkwater LE.

Front Microbiol. 2017 Dec 11;8:2414. doi: 10.3389/fmicb.2017.02414. eCollection 2017.

9.

HTSSIP: An R package for analysis of high throughput sequencing data from nucleic acid stable isotope probing (SIP) experiments.

Youngblut ND, Barnett SE, Buckley DH.

PLoS One. 2018 Jan 3;13(1):e0189616. doi: 10.1371/journal.pone.0189616. eCollection 2018.

10.

The Green Berry Consortia of the Sippewissett Salt Marsh: Millimeter-Sized Aggregates of Diazotrophic Unicellular Cyanobacteria.

Wilbanks EG, Salman-Carvalho V, Jaekel U, Humphrey PT, Eisen JA, Buckley DH, Zinder SH.

Front Microbiol. 2017 Sep 4;8:1623. doi: 10.3389/fmicb.2017.01623. eCollection 2017.

11.

The Use of Degenerate Primers in qPCR Analysis of Functional Genes Can Cause Dramatic Quantification Bias as Revealed by Investigation of nifH Primer Performance.

Gaby JC, Buckley DH.

Microb Ecol. 2017 Oct;74(3):701-708. doi: 10.1007/s00248-017-0968-0. Epub 2017 Apr 7.

PMID:
28389727
12.

Genome Surfing As Driver of Microbial Genomic Diversity.

Choudoir MJ, Panke-Buisse K, Andam CP, Buckley DH.

Trends Microbiol. 2017 Aug;25(8):624-636. doi: 10.1016/j.tim.2017.02.006. Epub 2017 Mar 7. Review.

PMID:
28283403
13.

Latitude delineates patterns of biogeography in terrestrial Streptomyces.

Choudoir MJ, Doroghazi JR, Buckley DH.

Environ Microbiol. 2016 Dec;18(12):4931-4945. doi: 10.1111/1462-2920.13420. Epub 2016 Jul 12.

PMID:
27322415
14.

Unearthing the Ecology of Soil Microorganisms Using a High Resolution DNA-SIP Approach to Explore Cellulose and Xylose Metabolism in Soil.

Pepe-Ranney C, Campbell AN, Koechli CN, Berthrong S, Buckley DH.

Front Microbiol. 2016 May 12;7:703. doi: 10.3389/fmicb.2016.00703. eCollection 2016.

15.

Dynamics of microbial community composition and soil organic carbon mineralization in soil following addition of pyrogenic and fresh organic matter.

Whitman T, Pepe-Ranney C, Enders A, Koechli C, Campbell A, Buckley DH, Lehmann J.

ISME J. 2016 Dec;10(12):2918-2930. doi: 10.1038/ismej.2016.68. Epub 2016 Apr 29.

16.

A Latitudinal Diversity Gradient in Terrestrial Bacteria of the Genus Streptomyces.

Andam CP, Doroghazi JR, Campbell AN, Kelly PJ, Choudoir MJ, Buckley DH.

MBio. 2016 Apr 12;7(2):e02200-15. doi: 10.1128/mBio.02200-15.

17.

Contributions of ancestral inter-species recombination to the genetic diversity of extant Streptomyces lineages.

Andam CP, Choudoir MJ, Vinh Nguyen A, Sol Park H, Buckley DH.

ISME J. 2016 Jul;10(7):1731-41. doi: 10.1038/ismej.2015.230. Epub 2016 Feb 5.

18.

Non-cyanobacterial diazotrophs mediate dinitrogen fixation in biological soil crusts during early crust formation.

Pepe-Ranney C, Koechli C, Potrafka R, Andam C, Eggleston E, Garcia-Pichel F, Buckley DH.

ISME J. 2016 Feb;10(2):287-98. doi: 10.1038/ismej.2015.106. Epub 2015 Jun 26.

20.

Intra-genomic variation in G + C content and its implications for DNA stable isotope probing.

Youngblut ND, Buckley DH.

Environ Microbiol Rep. 2014 Dec;6(6):767-75. doi: 10.1111/1758-2229.12201. Epub 2014 Oct 7.

PMID:
25139123
21.

Microbial sequencing analyses suggest the presence of a fecal veneer on indoor climbing wall holds.

Bräuer SL, Vuono D, Carmichael MJ, Pepe-Ranney C, Strom A, Rabinowitz E, Buckley DH, Zinder SH.

Curr Microbiol. 2014 Nov;69(5):681-9. doi: 10.1007/s00284-014-0643-3. Epub 2014 Jun 28.

PMID:
24972665
22.

A comprehensive aligned nifH gene database: a multipurpose tool for studies of nitrogen-fixing bacteria.

Gaby JC, Buckley DH.

Database (Oxford). 2014 Feb 5;2014:bau001. doi: 10.1093/database/bau001. Print 2014.

23.

Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh.

Wilbanks EG, Jaekel U, Salman V, Humphrey PT, Eisen JA, Facciotti MT, Buckley DH, Zinder SH, Druschel GK, Fike DA, Orphan VJ.

Environ Microbiol. 2014 Nov;16(11):3398-415. doi: 10.1111/1462-2920.12388. Epub 2014 Feb 26.

24.

Bacterial diversity associated with the tunic of the model chordate Ciona intestinalis.

Blasiak LC, Zinder SH, Buckley DH, Hill RT.

ISME J. 2014 Feb;8(2):309-20. doi: 10.1038/ismej.2013.156. Epub 2013 Sep 19.

25.

Roadside ditches as conduits of fecal indicator organisms and sediment: implications for water quality management.

Falbo K, Schneider RL, Buckley DH, Walter MT, Bergholz PW, Buchanan BP.

J Environ Manage. 2013 Oct 15;128:1050-9. doi: 10.1016/j.jenvman.2013.05.021. Epub 2013 Aug 7.

PMID:
23933218
26.

Classification of Streptomyces phylogroup pratensis (Doroghazi and Buckley, 2010) based on genetic and phenotypic evidence, and proposal of Streptomyces pratensis sp. nov.

Rong X, Doroghazi JR, Cheng K, Zhang L, Buckley DH, Huang Y.

Syst Appl Microbiol. 2013 Sep;36(6):401-7. doi: 10.1016/j.syapm.2013.03.010. Epub 2013 Jun 14.

PMID:
23769815
27.

Agricultural management and labile carbon additions affect soil microbial community structure and interact with carbon and nitrogen cycling.

Berthrong ST, Buckley DH, Drinkwater LE.

Microb Ecol. 2013 Jul;66(1):158-70. doi: 10.1007/s00248-013-0225-0. Epub 2013 Apr 16.

PMID:
23588849
28.

Grappling with Proteus: population level approaches to understanding microbial diversity.

Choudoir MJ, Campbell AN, Buckley DH.

Front Microbiol. 2012 Sep 11;3:336. eCollection 2012.

29.

Millimeter-scale patterns of phylogenetic and trait diversity in a salt marsh microbial mat.

Armitage DW, Gallagher KL, Youngblut ND, Buckley DH, Zinder SH.

Front Microbiol. 2012 Aug 10;3:293. doi: 10.3389/fmicb.2012.00293. eCollection 2012.

30.

A comprehensive evaluation of PCR primers to amplify the nifH gene of nitrogenase.

Gaby JC, Buckley DH.

PLoS One. 2012;7(7):e42149. doi: 10.1371/journal.pone.0042149. Epub 2012 Jul 25. Erratum in: PLoS One. 2014;9(3):e93883.

31.

A Diabetic Adolescent Case Study: Use of a Website in Combination with an Exercise Program to Increase Physical Activity.

Buckley DH, Ainsworth MM, Demilia N, Tanzi S, Xu F, Lamont LS.

Int J Exerc Sci. 2012 Jul 15;5(3):296-300. eCollection 2012.

32.

A model for the effect of homologous recombination on microbial diversification.

Doroghazi JR, Buckley DH.

Genome Biol Evol. 2011;3:1349-56. doi: 10.1093/gbe/evr110. Epub 2011 Nov 9.

33.

A global census of nitrogenase diversity.

Gaby JC, Buckley DH.

Environ Microbiol. 2011 Jul;13(7):1790-9. doi: 10.1111/j.1462-2920.2011.02488.x. Epub 2011 Apr 28.

PMID:
21535343
34.

Multicellular photo-magnetotactic bacteria.

Shapiro OH, Hatzenpichler R, Buckley DH, Zinder SH, Orphan VJ.

Environ Microbiol Rep. 2011 Apr;3(2):233-8. doi: 10.1111/j.1758-2229.2010.00215.x. Epub 2010 Sep 30.

PMID:
23761255
35.

Environmental patterns are imposed on the population structure of Escherichia coli after fecal deposition.

Bergholz PW, Noar JD, Buckley DH.

Appl Environ Microbiol. 2011 Jan;77(1):211-9. doi: 10.1128/AEM.01880-10. Epub 2010 Nov 12.

36.

Widespread homologous recombination within and between Streptomyces species.

Doroghazi JR, Buckley DH.

ISME J. 2010 Sep;4(9):1136-43. doi: 10.1038/ismej.2010.45. Epub 2010 Apr 15.

PMID:
20393569
37.

Microbial species richness and metabolic activities in hypersaline microbial mats: insight into biosignature formation through lithification.

Baumgartner LK, Dupraz C, Buckley DH, Spear JR, Pace NR, Visscher PT.

Astrobiology. 2009 Nov;9(9):861-74. doi: 10.1089/ast.2008.0329.

PMID:
19968463
38.

Microbial diversity in modern marine stromatolites, Highborne Cay, Bahamas.

Baumgartner LK, Spear JR, Buckley DH, Pace NR, Reid RP, Dupraz C, Visscher PT.

Environ Microbiol. 2009 Oct;11(10):2710-9. doi: 10.1111/j.1462-2920.2009.01998.x. Epub 2009 Jul 6.

PMID:
19601956
39.

Ideonella azotifigens sp. nov., an aerobic diazotroph of the Betaproteobacteria isolated from grass rhizosphere soil, and emended description of the genus Ideonella.

Noar JD, Buckley DH.

Int J Syst Evol Microbiol. 2009 Aug;59(Pt 8):1941-6. doi: 10.1099/ijs.0.003368-0. Epub 2009 Jun 30.

PMID:
19567574
40.

T-REX: software for the processing and analysis of T-RFLP data.

Culman SW, Bukowski R, Gauch HG, Cadillo-Quiroz H, Buckley DH.

BMC Bioinformatics. 2009 Jun 6;10:171. doi: 10.1186/1471-2105-10-171.

41.

Evidence for the functional significance of diazotroph community structure in soil.

Hsu SF, Buckley DH.

ISME J. 2009 Jan;3(1):124-36. doi: 10.1038/ismej.2008.82. Epub 2008 Sep 4.

PMID:
18769458
42.

Evidence from GC-TRFLP that bacterial communities in soil are lognormally distributed.

Doroghazi JR, Buckley DH.

PLoS One. 2008 Aug 6;3(8):e2910. doi: 10.1371/journal.pone.0002910.

43.

Vertical distribution of methane metabolism in microbial mats of the Great Sippewissett Salt Marsh.

Buckley DH, Baumgartner LK, Visscher PT.

Environ Microbiol. 2008 Apr;10(4):967-77. doi: 10.1111/j.1462-2920.2007.01517.x. Epub 2008 Jan 24.

PMID:
18218028
44.

Stable isotope probing with 15N2 reveals novel noncultivated diazotrophs in soil.

Buckley DH, Huangyutitham V, Hsu SF, Nelson TA.

Appl Environ Microbiol. 2007 May;73(10):3196-204. Epub 2007 Mar 16.

45.

Stable isotope probing with 15N achieved by disentangling the effects of genome G+C content and isotope enrichment on DNA density.

Buckley DH, Huangyutitham V, Hsu SF, Nelson TA.

Appl Environ Microbiol. 2007 May;73(10):3189-95. Epub 2007 Mar 16.

46.

Diversity of Planctomycetes in soil in relation to soil history and environmental heterogeneity.

Buckley DH, Huangyutitham V, Nelson TA, Rumberger A, Thies JE.

Appl Environ Microbiol. 2006 Jul;72(7):4522-31. Erratum in: Appl Environ Microbiol. 2006 Sep;72(9):6429.

47.

Diversity and dynamics of microbial communities in soils from agro-ecosystems.

Buckley DH, Schmidt TM.

Environ Microbiol. 2003 Jun;5(6):441-52.

PMID:
12755711
48.

Dimethyl sulphide and methanethiol formation in microbial mats: potential pathways for biogenic signatures.

Visscher PT, Baumgartner LK, Buckley DH, Rogers DR, Hogan ME, Raleigh CD, Turk KA, Des Marais DJ.

Environ Microbiol. 2003 Apr;5(4):296-308.

PMID:
12662177
49.

The Structure of Microbial Communities in Soil and the Lasting Impact of Cultivation.

Buckley DH, Schmidt TM.

Microb Ecol. 2001 Jul;42(1):11-21.

PMID:
12035077
50.

Environmental factors influencing the distribution of rRNA from Verrucomicrobia in soil.

Buckley DH, Schmidt TM.

FEMS Microbiol Ecol. 2001 Mar;35(1):105-112.

Supplemental Content

Loading ...
Support Center