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Items: 1 to 50 of 137

1.

Coregulation of ribosomal RNA with hundreds of genes contributes to phenotypic variation.

Li B, Kremling KAG, Wu P, Bukowski R, Romay MC, Xie E, Buckler ES, Chen M.

Genome Res. 2018 Aug 30. doi: 10.1101/gr.229716.117. [Epub ahead of print]

PMID:
30166407
2.

The maize W22 genome provides a foundation for functional genomics and transposon biology.

Springer NM, Anderson SN, Andorf CM, Ahern KR, Bai F, Barad O, Barbazuk WB, Bass HW, Baruch K, Ben-Zvi G, Buckler ES, Bukowski R, Campbell MS, Cannon EKS, Chomet P, Dawe RK, Davenport R, Dooner HK, Du LH, Du C, Easterling KA, Gault C, Guan JC, Hunter CT, Jander G, Jiao Y, Koch KE, Kol G, Köllner TG, Kudo T, Li Q, Lu F, Mayfield-Jones D, Mei W, McCarty DR, Noshay JM, Portwood JL 2nd, Ronen G, Settles AM, Shem-Tov D, Shi J, Soifer I, Stein JC, Stitzer MC, Suzuki M, Vera DL, Vollbrecht E, Vrebalov JT, Ware D, Wei S, Wimalanathan K, Woodhouse MR, Xiong W, Brutnell TP.

Nat Genet. 2018 Sep;50(9):1282-1288. doi: 10.1038/s41588-018-0158-0. Epub 2018 Jul 30.

PMID:
30061736
3.

Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes.

Sun S, Zhou Y, Chen J, Shi J, Zhao H, Zhao H, Song W, Zhang M, Cui Y, Dong X, Liu H, Ma X, Jiao Y, Wang B, Wei X, Stein JC, Glaubitz JC, Lu F, Yu G, Liang C, Fengler K, Li B, Rafalski A, Schnable PS, Ware DH, Buckler ES, Lai J.

Nat Genet. 2018 Sep;50(9):1289-1295. doi: 10.1038/s41588-018-0182-0. Epub 2018 Jul 30.

PMID:
30061735
4.

Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets.

AlKhalifah N, Campbell DA, Falcon CM, Gardiner JM, Miller ND, Romay MC, Walls R, Walton R, Yeh CT, Bohn M, Bubert J, Buckler ES, Ciampitti I, Flint-Garcia S, Gore MA, Graham C, Hirsch C, Holland JB, Hooker D, Kaeppler S, Knoll J, Lauter N, Lee EC, Lorenz A, Lynch JP, Moose SP, Murray SC, Nelson R, Rocheford T, Rodriguez O, Schnable JC, Scully B, Smith M, Springer N, Thomison P, Tuinstra M, Wisser RJ, Xu W, Ertl D, Schnable PS, De Leon N, Spalding EP, Edwards J, Lawrence-Dill CJ.

BMC Res Notes. 2018 Jul 9;11(1):452. doi: 10.1186/s13104-018-3508-1.

5.

Large-scale replicated field study of maize rhizosphere identifies heritable microbes.

Walters WA, Jin Z, Youngblut N, Wallace JG, Sutter J, Zhang W, González-Peña A, Peiffer J, Koren O, Shi Q, Knight R, Glavina Del Rio T, Tringe SG, Buckler ES, Dangl JL, Ley RE.

Proc Natl Acad Sci U S A. 2018 Jul 10;115(28):7368-7373. doi: 10.1073/pnas.1800918115. Epub 2018 Jun 25.

6.

Expanding the BLUP alphabet for genomic prediction adaptable to the genetic architectures of complex traits.

Wang J, Zhou Z, Zhang Z, Li H, Liu D, Zhang Q, Bradbury PJ, Buckler ES, Zhang Z.

Heredity (Edinb). 2018 May 16. doi: 10.1038/s41437-018-0075-0. [Epub ahead of print]

PMID:
29765161
7.

Increased experimental conditions and marker densities identified more genetic loci associated with southern and northern leaf blight resistance in maize.

Li YX, Chen L, Li C, Bradbury PJ, Shi YS, Song Y, Zhang D, Zhang Z, Buckler ES, Li Y, Wang T.

Sci Rep. 2018 May 1;8(1):6848. doi: 10.1038/s41598-018-25304-z.

8.

Dysregulation of expression correlates with rare-allele burden and fitness loss in maize.

Kremling KAG, Chen SY, Su MH, Lepak NK, Romay MC, Swarts KL, Lu F, Lorant A, Bradbury PJ, Buckler ES.

Nature. 2018 Mar 22;555(7697):520-523. doi: 10.1038/nature25966. Epub 2018 Mar 14.

PMID:
29539638
9.

Construction of the third-generation Zea mays haplotype map.

Bukowski R, Guo X, Lu Y, Zou C, He B, Rong Z, Wang B, Xu D, Yang B, Xie C, Fan L, Gao S, Xu X, Zhang G, Li Y, Jiao Y, Doebley JF, Ross-Ibarra J, Lorant A, Buffalo V, Romay MC, Buckler ES, Ware D, Lai J, Sun Q, Xu Y.

Gigascience. 2018 Apr 1;7(4):1-12. doi: 10.1093/gigascience/gix134.

10.

Non-Mendelian Single-Nucleotide Polymorphism Inheritance and Atypical Meiotic Configurations are Prevalent in Hop.

Zhang D, Easterling KA, Pitra NJ, Coles MC, Buckler ES, Bass HW, Matthews PD.

Plant Genome. 2017 Nov;10(3). doi: 10.3835/plantgenome2017.04.0032.

11.

Diverse Chromosomal Locations of Quantitative Trait Loci for Tolerance to Maize chlorotic mottle virus in Five Maize Populations.

Jones MW, Penning BW, Jamann TM, Glaubitz JC, Romay C, Buckler ES, Redinbaugh MG.

Phytopathology. 2018 Jun;108(6):748-758. doi: 10.1094/PHYTO-09-17-0321-R. Epub 2018 Apr 19.

PMID:
29287150
12.

The effect of artificial selection on phenotypic plasticity in maize.

Gage JL, Jarquin D, Romay C, Lorenz A, Buckler ES, Kaeppler S, Alkhalifah N, Bohn M, Campbell DA, Edwards J, Ertl D, Flint-Garcia S, Gardiner J, Good B, Hirsch CN, Holland J, Hooker DC, Knoll J, Kolkman J, Kruger G, Lauter N, Lawrence-Dill CJ, Lee E, Lynch J, Murray SC, Nelson R, Petzoldt J, Rocheford T, Schnable J, Schnable PS, Scully B, Smith M, Springer NM, Srinivasan S, Walton R, Weldekidan T, Wisser RJ, Xu W, Yu J, de Leon N.

Nat Commun. 2017 Nov 7;8(1):1348. doi: 10.1038/s41467-017-01450-2.

13.

Genomic features shaping the landscape of meiotic double-strand-break hotspots in maize.

He Y, Wang M, Dukowic-Schulze S, Zhou A, Tiang CL, Shilo S, Sidhu GK, Eichten S, Bradbury P, Springer NM, Buckler ES, Levy AA, Sun Q, Pillardy J, Kianian PMA, Kianian SF, Chen C, Pawlowski WP.

Proc Natl Acad Sci U S A. 2017 Nov 14;114(46):12231-12236. doi: 10.1073/pnas.1713225114. Epub 2017 Oct 30.

14.

Novel Loci Underlie Natural Variation in Vitamin E Levels in Maize Grain.

Diepenbrock CH, Kandianis CB, Lipka AE, Magallanes-Lundback M, Vaillancourt B, Góngora-Castillo E, Wallace JG, Cepela J, Mesberg A, Bradbury PJ, Ilut DC, Mateos-Hernandez M, Hamilton J, Owens BF, Tiede T, Buckler ES, Rocheford T, Buell CR, Gore MA, DellaPenna D.

Plant Cell. 2017 Oct;29(10):2374-2392. doi: 10.1105/tpc.17.00475. Epub 2017 Oct 2.

15.

Incomplete dominance of deleterious alleles contributes substantially to trait variation and heterosis in maize.

Yang J, Mezmouk S, Baumgarten A, Buckler ES, Guill KE, McMullen MD, Mumm RH, Ross-Ibarra J.

PLoS Genet. 2017 Sep 27;13(9):e1007019. doi: 10.1371/journal.pgen.1007019. eCollection 2017 Sep.

16.

Patterns of genomic and phenomic diversity in wine and table grapes.

Migicovsky Z, Sawler J, Gardner KM, Aradhya MK, Prins BH, Schwaninger HR, Bustamante CD, Buckler ES, Zhong GY, Brown PJ, Myles S.

Hortic Res. 2017 Aug 2;4:17035. doi: 10.1038/hortres.2017.35. eCollection 2017.

17.

Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America.

Swarts K, Gutaker RM, Benz B, Blake M, Bukowski R, Holland J, Kruse-Peeples M, Lepak N, Prim L, Romay MC, Ross-Ibarra J, Sanchez-Gonzalez JJ, Schmidt C, Schuenemann VJ, Krause J, Matson RG, Weigel D, Buckler ES, Burbano HA.

Science. 2017 Aug 4;357(6350):512-515. doi: 10.1126/science.aam9425.

PMID:
28774930
18.

Maize YABBY Genes drooping leaf1 and drooping leaf2 Regulate Plant Architecture.

Strable J, Wallace JG, Unger-Wallace E, Briggs S, Bradbury PJ, Buckler ES, Vollbrecht E.

Plant Cell. 2017 Jul;29(7):1622-1641. doi: 10.1105/tpc.16.00477. Epub 2017 Jul 11.

19.

Corrigendum: A study of allelic diversity underlying flowering-time adaptation in maize landraces.

Navarro JAR, Wilcox M, Burgueño J, Romay C, Swarts K, Trachsel S, Preciado E, Terron A, Delgado HV, Vidal V, Ortega A, Banda AE, Montiel NOG, Ortiz-Monasterio I, Vicente FS, Espinoza AG, Atlin G, Wenzl P, Hearne S, Buckler ES.

Nat Genet. 2017 May 26;49(6):970. doi: 10.1038/ng0617-970c. No abstract available.

PMID:
28546574
20.

Cassava haplotype map highlights fixation of deleterious mutations during clonal propagation.

Ramu P, Esuma W, Kawuki R, Rabbi IY, Egesi C, Bredeson JV, Bart RS, Verma J, Buckler ES, Lu F.

Nat Genet. 2017 Jun;49(6):959-963. doi: 10.1038/ng.3845. Epub 2017 Apr 17.

PMID:
28416819
21.

A study of allelic diversity underlying flowering-time adaptation in maize landraces.

Romero Navarro JA, Willcox M, Burgueño J, Romay C, Swarts K, Trachsel S, Preciado E, Terron A, Delgado HV, Vidal V, Ortega A, Banda AE, Montiel NO, Ortiz-Monasterio I, Vicente FS, Espinoza AG, Atlin G, Wenzl P, Hearne S, Buckler ES.

Nat Genet. 2017 Mar;49(3):476-480. doi: 10.1038/ng.3784. Epub 2017 Feb 6. Erratum in: Nat Genet. 2017 May 26;49(6):970.

PMID:
28166212
22.

GAPIT Version 2: An Enhanced Integrated Tool for Genomic Association and Prediction.

Tang Y, Liu X, Wang J, Li M, Wang Q, Tian F, Su Z, Pan Y, Liu D, Lipka AE, Buckler ES, Zhang Z.

Plant Genome. 2016 Jul;9(2). doi: 10.3835/plantgenome2015.11.0120.

23.

Development of a High-Density Linkage Map and Tagging Leaf Spot Resistance in Pearl Millet Using Genotyping-by-Sequencing Markers.

Punnuri SM, Wallace JG, Knoll JE, Hyma KE, Mitchell SE, Buckler ES, Varshney RK, Singh BP.

Plant Genome. 2016 Jul;9(2). doi: 10.3835/plantgenome2015.10.0106.

24.

Numerous genetic loci identified for drought tolerance in the maize nested association mapping populations.

Li C, Sun B, Li Y, Liu C, Wu X, Zhang D, Shi Y, Song Y, Buckler ES, Zhang Z, Wang T, Li Y.

BMC Genomics. 2016 Nov 8;17(1):894.

25.

Characterization of Biosynthetic Pathways for the Production of the Volatile Homoterpenes DMNT and TMTT in Zea mays.

Richter A, Schaff C, Zhang Z, Lipka AE, Tian F, Köllner TG, Schnee C, Preiß S, Irmisch S, Jander G, Boland W, Gershenzon J, Buckler ES, Degenhardt J.

Plant Cell. 2016 Oct;28(10):2651-2665. Epub 2016 Sep 23.

26.

Correlation-Based Network Analysis of Metabolite and Enzyme Profiles Reveals a Role of Citrate Biosynthesis in Modulating N and C Metabolism in Zea mays.

Toubiana D, Xue W, Zhang N, Kremling K, Gur A, Pilosof S, Gibon Y, Stitt M, Buckler ES, Fernie AR, Fait A.

Front Plant Sci. 2016 Jul 12;7:1022. doi: 10.3389/fpls.2016.01022. eCollection 2016.

27.

Fast-Flowering Mini-Maize: Seed to Seed in 60 Days.

McCaw ME, Wallace JG, Albert PS, Buckler ES, Birchler JA.

Genetics. 2016 Sep;204(1):35-42. doi: 10.1534/genetics.116.191726. Epub 2016 Jul 20.

28.

Analysis of recombination QTLs, segregation distortion, and epistasis for fitness in maize multiple populations using ultra-high-density markers.

Li C, Li Y, Shi Y, Song Y, Zhang D, Buckler ES, Zhang Z, Li Y, Wang T.

Theor Appl Genet. 2016 Sep;129(9):1775-84. doi: 10.1007/s00122-016-2739-6. Epub 2016 Jul 5.

PMID:
27379519
29.

Biosynthesis of 8-O-Methylated Benzoxazinoid Defense Compounds in Maize.

Handrick V, Robert CA, Ahern KR, Zhou S, Machado RA, Maag D, Glauser G, Fernandez-Penny FE, Chandran JN, Rodgers-Melnik E, Schneider B, Buckler ES, Boland W, Gershenzon J, Jander G, Erb M, Köllner TG.

Plant Cell. 2016 Jul;28(7):1682-700. doi: 10.1105/tpc.16.00065. Epub 2016 Jun 17.

30.

Open chromatin reveals the functional maize genome.

Rodgers-Melnick E, Vera DL, Bass HW, Buckler ES.

Proc Natl Acad Sci U S A. 2016 May 31;113(22):E3177-84. doi: 10.1073/pnas.1525244113. Epub 2016 May 16.

31.

Identification of genetic variants associated with maize flowering time using an extremely large multi-genetic background population.

Li YX, Li C, Bradbury PJ, Liu X, Lu F, Romay CM, Glaubitz JC, Wu X, Peng B, Shi Y, Song Y, Zhang D, Buckler ES, Zhang Z, Li Y, Wang T.

Plant J. 2016 Jun;86(5):391-402. doi: 10.1111/tpj.13174. Epub 2016 Jun 20.

32.

A Proposal Regarding Best Practices for Validating the Identity of Genetic Stocks and the Effects of Genetic Variants.

Bergelson J, Buckler ES, Ecker JR, Nordborg M, Weigel D.

Plant Cell. 2016 Mar;28(3):606-9. doi: 10.1105/tpc.15.00502. Epub 2016 Mar 8. No abstract available.

33.

Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies.

Liu X, Huang M, Fan B, Buckler ES, Zhang Z.

PLoS Genet. 2016 Feb 1;12(2):e1005767. doi: 10.1371/journal.pgen.1005767. eCollection 2016 Feb. Erratum in: PLoS Genet. 2016 Mar;12(3):e1005957.

34.

Joint-linkage mapping and GWAS reveal extensive genetic loci that regulate male inflorescence size in maize.

Wu X, Li Y, Shi Y, Song Y, Zhang D, Li C, Buckler ES, Li Y, Zhang Z, Wang T.

Plant Biotechnol J. 2016 Jul;14(7):1551-62. doi: 10.1111/pbi.12519. Epub 2016 Jan 23.

35.

Genome-environment associations in sorghum landraces predict adaptive traits.

Lasky JR, Upadhyaya HD, Ramu P, Deshpande S, Hash CT, Bonnette J, Juenger TE, Hyma K, Acharya C, Mitchell SE, Buckler ES, Brenton Z, Kresovich S, Morris GP.

Sci Adv. 2015 Jul 3;1(6):e1400218. doi: 10.1126/sciadv.1400218. eCollection 2015 Jul.

36.

Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize.

Li C, Li Y, Bradbury PJ, Wu X, Shi Y, Song Y, Zhang D, Rodgers-Melnick E, Buckler ES, Zhang Z, Li Y, Wang T.

BMC Biol. 2015 Sep 21;13:78. doi: 10.1186/s12915-015-0187-4.

37.

Independent Molecular Basis of Convergent Highland Adaptation in Maize.

Takuno S, Ralph P, Swarts K, Elshire RJ, Glaubitz JC, Buckler ES, Hufford MB, Ross-Ibarra J.

Genetics. 2015 Aug;200(4):1297-312. doi: 10.1534/genetics.115.178327. Epub 2015 Jun 15.

38.

Genome-wide association of carbon and nitrogen metabolism in the maize nested association mapping population.

Zhang N, Gibon Y, Wallace JG, Lepak N, Li P, Dedow L, Chen C, So YS, Kremling K, Bradbury PJ, Brutnell T, Stitt M, Buckler ES.

Plant Physiol. 2015 Jun;168(2):575-83. doi: 10.1104/pp.15.00025. Epub 2015 Apr 27.

39.

High-resolution genetic mapping of maize pan-genome sequence anchors.

Lu F, Romay MC, Glaubitz JC, Bradbury PJ, Elshire RJ, Wang T, Li Y, Li Y, Semagn K, Zhang X, Hernandez AG, Mikel MA, Soifer I, Barad O, Buckler ES.

Nat Commun. 2015 Apr 16;6:6914. doi: 10.1038/ncomms7914.

40.

Genetic control of the leaf angle and leaf orientation value as revealed by ultra-high density maps in three connected maize populations.

Li C, Li Y, Shi Y, Song Y, Zhang D, Buckler ES, Zhang Z, Wang T, Li Y.

PLoS One. 2015 Mar 25;10(3):e0121624. doi: 10.1371/journal.pone.0121624. eCollection 2015.

41.

Recombination in diverse maize is stable, predictable, and associated with genetic load.

Rodgers-Melnick E, Bradbury PJ, Elshire RJ, Glaubitz JC, Acharya CB, Mitchell SE, Li C, Li Y, Buckler ES.

Proc Natl Acad Sci U S A. 2015 Mar 24;112(12):3823-8. doi: 10.1073/pnas.1413864112. Epub 2015 Mar 9.

42.

Genome-wide association study based on multiple imputation with low-depth sequencing data: application to biofuel traits in reed canarygrass.

Ramstein GP, Lipka AE, Lu F, Costich DE, Cherney JH, Buckler ES, Casler MD.

G3 (Bethesda). 2015 Mar 12;5(5):891-909. doi: 10.1534/g3.115.017533.

43.

Genome-wide association study of Fusarium ear rot disease in the U.S.A. maize inbred line collection.

Zila CT, Ogut F, Romay MC, Gardner CA, Buckler ES, Holland JB.

BMC Plant Biol. 2014 Dec 30;14:372. doi: 10.1186/s12870-014-0372-6.

44.

Association mapping across numerous traits reveals patterns of functional variation in maize.

Wallace JG, Bradbury PJ, Zhang N, Gibon Y, Stitt M, Buckler ES.

PLoS Genet. 2014 Dec 4;10(12):e1004845. doi: 10.1371/journal.pgen.1004845. eCollection 2014 Dec.

45.

Accelerating the switchgrass (Panicum virgatum L.) breeding cycle using genomic selection approaches.

Lipka AE, Lu F, Cherney JH, Buckler ES, Casler MD, Costich DE.

PLoS One. 2014 Nov 12;9(11):e112227. doi: 10.1371/journal.pone.0112227. eCollection 2014.

46.

Enrichment of statistical power for genome-wide association studies.

Li M, Liu X, Bradbury P, Yu J, Zhang YM, Todhunter RJ, Buckler ES, Zhang Z.

BMC Biol. 2014 Oct 17;12:73. doi: 10.1186/s12915-014-0073-5.

47.

Accumulation of 5-hydroxynorvaline in maize (Zea mays) leaves is induced by insect feeding and abiotic stress.

Yan J, Lipka AE, Schmelz EA, Buckler ES, Jander G.

J Exp Bot. 2015 Feb;66(2):593-602. doi: 10.1093/jxb/eru385. Epub 2014 Sep 30.

48.

A foundation for provitamin A biofortification of maize: genome-wide association and genomic prediction models of carotenoid levels.

Owens BF, Lipka AE, Magallanes-Lundback M, Tiede T, Diepenbrock CH, Kandianis CB, Kim E, Cepela J, Mateos-Hernandez M, Buell CR, Buckler ES, DellaPenna D, Gore MA, Rocheford T.

Genetics. 2014 Dec;198(4):1699-716. doi: 10.1534/genetics.114.169979. Epub 2014 Sep 25.

49.

A SUPER powerful method for genome wide association study.

Wang Q, Tian F, Pan Y, Buckler ES, Zhang Z.

PLoS One. 2014 Sep 23;9(9):e107684. doi: 10.1371/journal.pone.0107684. eCollection 2014.

50.

Insights into the effects of long-term artificial selection on seed size in maize.

Hirsch CN, Flint-Garcia SA, Beissinger TM, Eichten SR, Deshpande S, Barry K, McMullen MD, Holland JB, Buckler ES, Springer N, Buell CR, de Leon N, Kaeppler SM.

Genetics. 2014 Sep;198(1):409-21. doi: 10.1534/genetics.114.167155. Epub 2014 Jul 17.

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