Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 172

1.

Multiple genes recruited from hormone pathways partition maize diterpenoid defences.

Ding Y, Murphy KM, Poretsky E, Mafu S, Yang B, Char SN, Christensen SA, Saldivar E, Wu M, Wang Q, Ji L, Schmitz RJ, Kremling KA, Buckler ES, Shen Z, Briggs SP, Bohlmann J, Sher A, Castro-Falcon G, Hughes CC, Huffaker A, Zerbe P, Schmelz EA.

Nat Plants. 2019 Oct;5(10):1043-1056. doi: 10.1038/s41477-019-0509-6. Epub 2019 Sep 16.

PMID:
31527844
2.

Transcriptome-Wide Association Supplements Genome-Wide Association in Zea mays.

Kremling KAG, Diepenbrock CH, Gore MA, Buckler ES, Bandillo NB.

G3 (Bethesda). 2019 Sep 4;9(9):3023-3033. doi: 10.1534/g3.119.400549.

3.

The multi-allelic APRR2 gene is associated with fruit pigment accumulation in melon and watermelon.

Oren E, Tzuri G, Vexler L, Dafna A, Meir A, Faigenboim A, Kenigswald M, Portnoy V, Schaffer AA, Levi A, Buckler ES, Katzir N, Burger J, Tadmor Y, Gur A.

J Exp Bot. 2019 Aug 7;70(15):3781-3794. doi: 10.1093/jxb/erz182.

4.

Genome-Wide Association and Genomic Prediction Models of Tocochromanols in Fresh Sweet Corn Kernels.

Baseggio M, Murray M, Magallanes-Lundback M, Kaczmar N, Chamness J, Buckler ES, Smith ME, DellaPenna D, Tracy WF, Gore MA.

Plant Genome. 2019 Mar;12(1). doi: 10.3835/plantgenome2018.06.0038.

5.

Metabolome-Scale Genome-Wide Association Studies Reveal Chemical Diversity and Genetic Control of Maize Specialized Metabolites.

Zhou S, Kremling KA, Bandillo N, Richter A, Zhang YK, Ahern KR, Artyukhin AB, Hui JX, Younkin GC, Schroeder FC, Buckler ES, Jander G.

Plant Cell. 2019 May;31(5):937-955. doi: 10.1105/tpc.18.00772. Epub 2019 Mar 28.

PMID:
30923231
6.

A k-mer grammar analysis to uncover maize regulatory architecture.

Mejía-Guerra MK, Buckler ES.

BMC Plant Biol. 2019 Mar 15;19(1):103. doi: 10.1186/s12870-019-1693-2.

7.

The genetic architecture of teosinte catalyzed and constrained maize domestication.

Yang CJ, Samayoa LF, Bradbury PJ, Olukolu BA, Xue W, York AM, Tuholski MR, Wang W, Daskalska LL, Neumeyer MA, Sanchez-Gonzalez JJ, Romay MC, Glaubitz JC, Sun Q, Buckler ES, Holland JB, Doebley JF.

Proc Natl Acad Sci U S A. 2019 Mar 19;116(12):5643-5652. doi: 10.1073/pnas.1820997116. Epub 2019 Mar 6.

8.

Evolutionarily informed deep learning methods for predicting relative transcript abundance from DNA sequence.

Washburn JD, Mejia-Guerra MK, Ramstein G, Kremling KA, Valluru R, Buckler ES, Wang H.

Proc Natl Acad Sci U S A. 2019 Mar 19;116(12):5542-5549. doi: 10.1073/pnas.1814551116. Epub 2019 Mar 6.

9.

Deleterious Mutation Burden and Its Association with Complex Traits in Sorghum (Sorghum bicolor).

Valluru R, Gazave EE, Fernandes SB, Ferguson JN, Lozano R, Hirannaiah P, Zuo T, Brown PJ, Leakey ADB, Gore MA, Buckler ES, Bandillo N.

Genetics. 2019 Mar;211(3):1075-1087. doi: 10.1534/genetics.118.301742. Epub 2019 Jan 8.

PMID:
30622134
10.

Breaking the curse of dimensionality to identify causal variants in Breeding 4.

Ramstein GP, Jensen SE, Buckler ES.

Theor Appl Genet. 2019 Mar;132(3):559-567. doi: 10.1007/s00122-018-3267-3. Epub 2018 Dec 13. Review.

11.

Tripsacum De novo Transcriptome Assemblies Reveal Parallel Gene Evolution with Maize after Ancient Polyploidy.

Gault CM, Kremling KA, Buckler ES.

Plant Genome. 2018 Nov;11(3). doi: 10.3835/plantgenome2018.02.0012.

12.

Ethylene signaling regulates natural variation in the abundance of antifungal acetylated diferuloylsucroses and Fusarium graminearum resistance in maize seedling roots.

Zhou S, Zhang YK, Kremling KA, Ding Y, Bennett JS, Bae JS, Kim DK, Ackerman HH, Kolomiets MV, Schmelz EA, Schroeder FC, Buckler ES, Jander G.

New Phytol. 2019 Mar;221(4):2096-2111. doi: 10.1111/nph.15520. Epub 2018 Nov 2.

PMID:
30289553
13.

On the Road to Breeding 4.0: Unraveling the Good, the Bad, and the Boring of Crop Quantitative Genomics.

Wallace JG, Rodgers-Melnick E, Buckler ES.

Annu Rev Genet. 2018 Nov 23;52:421-444. doi: 10.1146/annurev-genet-120116-024846. Epub 2018 Oct 4. Review.

PMID:
30285496
14.

Coregulation of ribosomal RNA with hundreds of genes contributes to phenotypic variation.

Li B, Kremling KAG, Wu P, Bukowski R, Romay MC, Xie E, Buckler ES, Chen M.

Genome Res. 2018 Oct;28(10):1555-1565. doi: 10.1101/gr.229716.117. Epub 2018 Aug 30.

15.

The maize W22 genome provides a foundation for functional genomics and transposon biology.

Springer NM, Anderson SN, Andorf CM, Ahern KR, Bai F, Barad O, Barbazuk WB, Bass HW, Baruch K, Ben-Zvi G, Buckler ES, Bukowski R, Campbell MS, Cannon EKS, Chomet P, Dawe RK, Davenport R, Dooner HK, Du LH, Du C, Easterling KA, Gault C, Guan JC, Hunter CT, Jander G, Jiao Y, Koch KE, Kol G, Köllner TG, Kudo T, Li Q, Lu F, Mayfield-Jones D, Mei W, McCarty DR, Noshay JM, Portwood JL 2nd, Ronen G, Settles AM, Shem-Tov D, Shi J, Soifer I, Stein JC, Stitzer MC, Suzuki M, Vera DL, Vollbrecht E, Vrebalov JT, Ware D, Wei S, Wimalanathan K, Woodhouse MR, Xiong W, Brutnell TP.

Nat Genet. 2018 Sep;50(9):1282-1288. doi: 10.1038/s41588-018-0158-0. Epub 2018 Jul 30.

PMID:
30061736
16.

Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes.

Sun S, Zhou Y, Chen J, Shi J, Zhao H, Zhao H, Song W, Zhang M, Cui Y, Dong X, Liu H, Ma X, Jiao Y, Wang B, Wei X, Stein JC, Glaubitz JC, Lu F, Yu G, Liang C, Fengler K, Li B, Rafalski A, Schnable PS, Ware DH, Buckler ES, Lai J.

Nat Genet. 2018 Sep;50(9):1289-1295. doi: 10.1038/s41588-018-0182-0. Epub 2018 Jul 30.

PMID:
30061735
17.

Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets.

AlKhalifah N, Campbell DA, Falcon CM, Gardiner JM, Miller ND, Romay MC, Walls R, Walton R, Yeh CT, Bohn M, Bubert J, Buckler ES, Ciampitti I, Flint-Garcia S, Gore MA, Graham C, Hirsch C, Holland JB, Hooker D, Kaeppler S, Knoll J, Lauter N, Lee EC, Lorenz A, Lynch JP, Moose SP, Murray SC, Nelson R, Rocheford T, Rodriguez O, Schnable JC, Scully B, Smith M, Springer N, Thomison P, Tuinstra M, Wisser RJ, Xu W, Ertl D, Schnable PS, De Leon N, Spalding EP, Edwards J, Lawrence-Dill CJ.

BMC Res Notes. 2018 Jul 9;11(1):452. doi: 10.1186/s13104-018-3508-1.

18.

Large-scale replicated field study of maize rhizosphere identifies heritable microbes.

Walters WA, Jin Z, Youngblut N, Wallace JG, Sutter J, Zhang W, González-Peña A, Peiffer J, Koren O, Shi Q, Knight R, Glavina Del Rio T, Tringe SG, Buckler ES, Dangl JL, Ley RE.

Proc Natl Acad Sci U S A. 2018 Jul 10;115(28):7368-7373. doi: 10.1073/pnas.1800918115. Epub 2018 Jun 25.

19.

Expanding the BLUP alphabet for genomic prediction adaptable to the genetic architectures of complex traits.

Wang J, Zhou Z, Zhang Z, Li H, Liu D, Zhang Q, Bradbury PJ, Buckler ES, Zhang Z.

Heredity (Edinb). 2018 Dec;121(6):648-662. doi: 10.1038/s41437-018-0075-0. Epub 2018 May 16.

20.

Increased experimental conditions and marker densities identified more genetic loci associated with southern and northern leaf blight resistance in maize.

Li YX, Chen L, Li C, Bradbury PJ, Shi YS, Song Y, Zhang D, Zhang Z, Buckler ES, Li Y, Wang T.

Sci Rep. 2018 May 1;8(1):6848. doi: 10.1038/s41598-018-25304-z.

21.

Dysregulation of expression correlates with rare-allele burden and fitness loss in maize.

Kremling KAG, Chen SY, Su MH, Lepak NK, Romay MC, Swarts KL, Lu F, Lorant A, Bradbury PJ, Buckler ES.

Nature. 2018 Mar 22;555(7697):520-523. doi: 10.1038/nature25966. Epub 2018 Mar 14.

PMID:
29539638
22.

Construction of the third-generation Zea mays haplotype map.

Bukowski R, Guo X, Lu Y, Zou C, He B, Rong Z, Wang B, Xu D, Yang B, Xie C, Fan L, Gao S, Xu X, Zhang G, Li Y, Jiao Y, Doebley JF, Ross-Ibarra J, Lorant A, Buffalo V, Romay MC, Buckler ES, Ware D, Lai J, Sun Q, Xu Y.

Gigascience. 2018 Apr 1;7(4):1-12. doi: 10.1093/gigascience/gix134.

23.

Non-Mendelian Single-Nucleotide Polymorphism Inheritance and Atypical Meiotic Configurations are Prevalent in Hop.

Zhang D, Easterling KA, Pitra NJ, Coles MC, Buckler ES, Bass HW, Matthews PD.

Plant Genome. 2017 Nov;10(3). doi: 10.3835/plantgenome2017.04.0032.

24.

Diverse Chromosomal Locations of Quantitative Trait Loci for Tolerance to Maize chlorotic mottle virus in Five Maize Populations.

Jones MW, Penning BW, Jamann TM, Glaubitz JC, Romay C, Buckler ES, Redinbaugh MG.

Phytopathology. 2018 Jun;108(6):748-758. doi: 10.1094/PHYTO-09-17-0321-R. Epub 2018 Apr 19.

PMID:
29287150
25.

The effect of artificial selection on phenotypic plasticity in maize.

Gage JL, Jarquin D, Romay C, Lorenz A, Buckler ES, Kaeppler S, Alkhalifah N, Bohn M, Campbell DA, Edwards J, Ertl D, Flint-Garcia S, Gardiner J, Good B, Hirsch CN, Holland J, Hooker DC, Knoll J, Kolkman J, Kruger G, Lauter N, Lawrence-Dill CJ, Lee E, Lynch J, Murray SC, Nelson R, Petzoldt J, Rocheford T, Schnable J, Schnable PS, Scully B, Smith M, Springer NM, Srinivasan S, Walton R, Weldekidan T, Wisser RJ, Xu W, Yu J, de Leon N.

Nat Commun. 2017 Nov 7;8(1):1348. doi: 10.1038/s41467-017-01450-2.

26.

Genomic features shaping the landscape of meiotic double-strand-break hotspots in maize.

He Y, Wang M, Dukowic-Schulze S, Zhou A, Tiang CL, Shilo S, Sidhu GK, Eichten S, Bradbury P, Springer NM, Buckler ES, Levy AA, Sun Q, Pillardy J, Kianian PMA, Kianian SF, Chen C, Pawlowski WP.

Proc Natl Acad Sci U S A. 2017 Nov 14;114(46):12231-12236. doi: 10.1073/pnas.1713225114. Epub 2017 Oct 30.

27.

Novel Loci Underlie Natural Variation in Vitamin E Levels in Maize Grain.

Diepenbrock CH, Kandianis CB, Lipka AE, Magallanes-Lundback M, Vaillancourt B, Góngora-Castillo E, Wallace JG, Cepela J, Mesberg A, Bradbury PJ, Ilut DC, Mateos-Hernandez M, Hamilton J, Owens BF, Tiede T, Buckler ES, Rocheford T, Buell CR, Gore MA, DellaPenna D.

Plant Cell. 2017 Oct;29(10):2374-2392. doi: 10.1105/tpc.17.00475. Epub 2017 Oct 2.

28.

Incomplete dominance of deleterious alleles contributes substantially to trait variation and heterosis in maize.

Yang J, Mezmouk S, Baumgarten A, Buckler ES, Guill KE, McMullen MD, Mumm RH, Ross-Ibarra J.

PLoS Genet. 2017 Sep 27;13(9):e1007019. doi: 10.1371/journal.pgen.1007019. eCollection 2017 Sep.

29.

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.

Varshney RK, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava RK, Chitikineni A, Fan G, Bajaj P, Punnuri S, Gupta SK, Wang H, Jiang Y, Couderc M, Katta MAVSK, Paudel DR, Mungra KD, Chen W, Harris-Shultz KR, Garg V, Desai N, Doddamani D, Kane NA, Conner JA, Ghatak A, Chaturvedi P, Subramaniam S, Yadav OP, Berthouly-Salazar C, Hamidou F, Wang J, Liang X, Clotault J, Upadhyaya HD, Cubry P, Rhoné B, Gueye MC, Sunkar R, Dupuy C, Sparvoli F, Cheng S, Mahala RS, Singh B, Yadav RS, Lyons E, Datta SK, Hash CT, Devos KM, Buckler E, Bennetzen JL, Paterson AH, Ozias-Akins P, Grando S, Wang J, Mohapatra T, Weckwerth W, Reif JC, Liu X, Vigouroux Y, Xu X.

Nat Biotechnol. 2017 Oct;35(10):969-976. doi: 10.1038/nbt.3943. Epub 2017 Sep 18.

30.

Patterns of genomic and phenomic diversity in wine and table grapes.

Migicovsky Z, Sawler J, Gardner KM, Aradhya MK, Prins BH, Schwaninger HR, Bustamante CD, Buckler ES, Zhong GY, Brown PJ, Myles S.

Hortic Res. 2017 Aug 2;4:17035. doi: 10.1038/hortres.2017.35. eCollection 2017.

31.

Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America.

Swarts K, Gutaker RM, Benz B, Blake M, Bukowski R, Holland J, Kruse-Peeples M, Lepak N, Prim L, Romay MC, Ross-Ibarra J, Sanchez-Gonzalez JJ, Schmidt C, Schuenemann VJ, Krause J, Matson RG, Weigel D, Buckler ES, Burbano HA.

Science. 2017 Aug 4;357(6350):512-515. doi: 10.1126/science.aam9425.

PMID:
28774930
32.

Maize YABBY Genes drooping leaf1 and drooping leaf2 Regulate Plant Architecture.

Strable J, Wallace JG, Unger-Wallace E, Briggs S, Bradbury PJ, Buckler ES, Vollbrecht E.

Plant Cell. 2017 Jul;29(7):1622-1641. doi: 10.1105/tpc.16.00477. Epub 2017 Jul 11.

33.

Corrigendum: A study of allelic diversity underlying flowering-time adaptation in maize landraces.

Navarro JAR, Wilcox M, Burgueño J, Romay C, Swarts K, Trachsel S, Preciado E, Terron A, Delgado HV, Vidal V, Ortega A, Banda AE, Montiel NOG, Ortiz-Monasterio I, Vicente FS, Espinoza AG, Atlin G, Wenzl P, Hearne S, Buckler ES.

Nat Genet. 2017 May 26;49(6):970. doi: 10.1038/ng0617-970c. No abstract available.

PMID:
28546574
34.

Rapid Cycling Genomic Selection in a Multiparental Tropical Maize Population.

Zhang X, Pérez-Rodríguez P, Burgueño J, Olsen M, Buckler E, Atlin G, Prasanna BM, Vargas M, San Vicente F, Crossa J.

G3 (Bethesda). 2017 Jul 5;7(7):2315-2326. doi: 10.1534/g3.117.043141.

35.

Cassava haplotype map highlights fixation of deleterious mutations during clonal propagation.

Ramu P, Esuma W, Kawuki R, Rabbi IY, Egesi C, Bredeson JV, Bart RS, Verma J, Buckler ES, Lu F.

Nat Genet. 2017 Jun;49(6):959-963. doi: 10.1038/ng.3845. Epub 2017 Apr 17.

PMID:
28416819
36.

A study of allelic diversity underlying flowering-time adaptation in maize landraces.

Romero Navarro JA, Willcox M, Burgueño J, Romay C, Swarts K, Trachsel S, Preciado E, Terron A, Delgado HV, Vidal V, Ortega A, Banda AE, Montiel NO, Ortiz-Monasterio I, Vicente FS, Espinoza AG, Atlin G, Wenzl P, Hearne S, Buckler ES.

Nat Genet. 2017 Mar;49(3):476-480. doi: 10.1038/ng.3784. Epub 2017 Feb 6. Erratum in: Nat Genet. 2017 May 26;49(6):970.

PMID:
28166212
37.

The influence of race length on arterial compliance following an ultra-endurance marathon.

Bonsignore A, Bredin SS, Wollmann H, Morrison B, Jeklin A, Buschmann L, Robertson J, Buckler EJ, McGuinty D, Rice MS, Warburton DE.

Eur J Sport Sci. 2017 May;17(4):441-446. doi: 10.1080/17461391.2016.1262453. Epub 2016 Dec 7.

PMID:
27923330
38.

GAPIT Version 2: An Enhanced Integrated Tool for Genomic Association and Prediction.

Tang Y, Liu X, Wang J, Li M, Wang Q, Tian F, Su Z, Pan Y, Liu D, Lipka AE, Buckler ES, Zhang Z.

Plant Genome. 2016 Jul;9(2). doi: 10.3835/plantgenome2015.11.0120.

39.

Development of a High-Density Linkage Map and Tagging Leaf Spot Resistance in Pearl Millet Using Genotyping-by-Sequencing Markers.

Punnuri SM, Wallace JG, Knoll JE, Hyma KE, Mitchell SE, Buckler ES, Varshney RK, Singh BP.

Plant Genome. 2016 Jul;9(2). doi: 10.3835/plantgenome2015.10.0106.

40.

Expanding Maize Genetic Resources with Predomestication Alleles: Maize-Teosinte Introgression Populations.

Liu Z, Cook J, Melia-Hancock S, Guill K, Bottoms C, Garcia A, Ott O, Nelson R, Recker J, Balint-Kurti P, Larsson S, Lepak N, Buckler E, Trimble L, Tracy W, McMullen MD, Flint-Garcia SA.

Plant Genome. 2016 Mar;9(1). doi: 10.3835/plantgenome2015.07.0053.

41.

Numerous genetic loci identified for drought tolerance in the maize nested association mapping populations.

Li C, Sun B, Li Y, Liu C, Wu X, Zhang D, Shi Y, Song Y, Buckler ES, Zhang Z, Wang T, Li Y.

BMC Genomics. 2016 Nov 8;17(1):894.

42.

Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize.

Hirsch CN, Hirsch CD, Brohammer AB, Bowman MJ, Soifer I, Barad O, Shem-Tov D, Baruch K, Lu F, Hernandez AG, Fields CJ, Wright CL, Koehler K, Springer NM, Buckler E, Buell CR, de Leon N, Kaeppler SM, Childs KL, Mikel MA.

Plant Cell. 2016 Nov;28(11):2700-2714. Epub 2016 Nov 1.

43.

Characterization of Biosynthetic Pathways for the Production of the Volatile Homoterpenes DMNT and TMTT in Zea mays.

Richter A, Schaff C, Zhang Z, Lipka AE, Tian F, Köllner TG, Schnee C, Preiß S, Irmisch S, Jander G, Boland W, Gershenzon J, Buckler ES, Degenhardt J.

Plant Cell. 2016 Oct;28(10):2651-2665. Epub 2016 Sep 23.

44.

Correlation-Based Network Analysis of Metabolite and Enzyme Profiles Reveals a Role of Citrate Biosynthesis in Modulating N and C Metabolism in Zea mays.

Toubiana D, Xue W, Zhang N, Kremling K, Gur A, Pilosof S, Gibon Y, Stitt M, Buckler ES, Fernie AR, Fait A.

Front Plant Sci. 2016 Jul 12;7:1022. doi: 10.3389/fpls.2016.01022. eCollection 2016.

45.

Fast-Flowering Mini-Maize: Seed to Seed in 60 Days.

McCaw ME, Wallace JG, Albert PS, Buckler ES, Birchler JA.

Genetics. 2016 Sep;204(1):35-42. doi: 10.1534/genetics.116.191726. Epub 2016 Jul 20.

46.

Analysis of recombination QTLs, segregation distortion, and epistasis for fitness in maize multiple populations using ultra-high-density markers.

Li C, Li Y, Shi Y, Song Y, Zhang D, Buckler ES, Zhang Z, Li Y, Wang T.

Theor Appl Genet. 2016 Sep;129(9):1775-84. doi: 10.1007/s00122-016-2739-6. Epub 2016 Jul 5.

PMID:
27379519
47.

Biosynthesis of 8-O-Methylated Benzoxazinoid Defense Compounds in Maize.

Handrick V, Robert CA, Ahern KR, Zhou S, Machado RA, Maag D, Glauser G, Fernandez-Penny FE, Chandran JN, Rodgers-Melnik E, Schneider B, Buckler ES, Boland W, Gershenzon J, Jander G, Erb M, Köllner TG.

Plant Cell. 2016 Jul;28(7):1682-700. doi: 10.1105/tpc.16.00065. Epub 2016 Jun 17.

48.

Open chromatin reveals the functional maize genome.

Rodgers-Melnick E, Vera DL, Bass HW, Buckler ES.

Proc Natl Acad Sci U S A. 2016 May 31;113(22):E3177-84. doi: 10.1073/pnas.1525244113. Epub 2016 May 16.

49.

Identification of genetic variants associated with maize flowering time using an extremely large multi-genetic background population.

Li YX, Li C, Bradbury PJ, Liu X, Lu F, Romay CM, Glaubitz JC, Wu X, Peng B, Shi Y, Song Y, Zhang D, Buckler ES, Zhang Z, Li Y, Wang T.

Plant J. 2016 Jun;86(5):391-402. doi: 10.1111/tpj.13174. Epub 2016 Jun 20.

50.

A Proposal Regarding Best Practices for Validating the Identity of Genetic Stocks and the Effects of Genetic Variants.

Bergelson J, Buckler ES, Ecker JR, Nordborg M, Weigel D.

Plant Cell. 2016 Mar;28(3):606-9. doi: 10.1105/tpc.15.00502. Epub 2016 Mar 8. No abstract available.

Supplemental Content

Loading ...
Support Center