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Mapping malaria by combining parasite genomic and epidemiologic data.

Wesolowski A, Taylor AR, Chang HH, Verity R, Tessema S, Bailey JA, Alex Perkins T, Neafsey DE, Greenhouse B, Buckee CO.

BMC Med. 2018 Oct 18;16(1):190. doi: 10.1186/s12916-018-1181-9.


Estimating sources and sinks of malaria parasites in Madagascar.

Ihantamalala FA, Herbreteau V, Rakotoarimanana FMJ, Rakotondramanga JM, Cauchemez S, Rahoilijaona B, Pennober G, Buckee CO, Rogier C, Metcalf CJE, Wesolowski A.

Nat Commun. 2018 Sep 25;9(1):3897. doi: 10.1038/s41467-018-06290-2.


Recent advances in the molecular epidemiology of clinical malaria.

Recker M, Bull PC, Buckee CO.

F1000Res. 2018 Jul 30;7. pii: F1000 Faculty Rev-1159. doi: 10.12688/f1000research.14991.1. eCollection 2018. Review.


Nonannual seasonality of influenza-like illness in a tropical urban setting.

Lam HM, Wesolowski A, Hung NT, Nguyen TD, Nhat NTD, Todd S, Vinh DN, Vy NHT, Thao TTN, Thanh NTL, Tin PT, Minh NNQ, Bryant JE, Buckee CO, Ngoc TV, Chau NVV, Thwaites GE, Farrar J, Tam DTH, Vinh H, Boni MF.

Influenza Other Respir Viruses. 2018 Nov;12(6):742-754. doi: 10.1111/irv.12595. Epub 2018 Aug 21.


Population mobility reductions associated with travel restrictions during the Ebola epidemic in Sierra Leone: use of mobile phone data.

Peak CM, Wesolowski A, Zu Erbach-Schoenberg E, Tatem AJ, Wetter E, Lu X, Power D, Weidman-Grunewald E, Ramos S, Moritz S, Buckee CO, Bengtsson L.

Int J Epidemiol. 2018 Oct 1;47(5):1562-1570. doi: 10.1093/ije/dyy095.


Resistance to Plasmodium falciparum in sickle cell trait erythrocytes is driven by oxygen-dependent growth inhibition.

Archer NM, Petersen N, Clark MA, Buckee CO, Childs LM, Duraisingh MT.

Proc Natl Acad Sci U S A. 2018 Jul 10;115(28):7350-7355. doi: 10.1073/pnas.1804388115. Epub 2018 Jun 26.


Measles outbreak risk in Pakistan: exploring the potential of combining vaccination coverage and incidence data with novel data-streams to strengthen control.

Wesolowski A, Winter A, Tatem AJ, Qureshi T, Engø-Monsen K, Buckee CO, Cummings DAT, Metcalf CJE.

Epidemiol Infect. 2018 Sep;146(12):1575-1583. doi: 10.1017/S0950268818001449. Epub 2018 Jun 4.


Mortality in Puerto Rico after Hurricane Maria.

Kishore N, Marqués D, Mahmud A, Kiang MV, Rodriguez I, Fuller A, Ebner P, Sorensen C, Racy F, Lemery J, Maas L, Leaning J, Irizarry RA, Balsari S, Buckee CO.

N Engl J Med. 2018 Jul 12;379(2):162-170. doi: 10.1056/NEJMsa1803972. Epub 2018 May 29.


Productive disruption: opportunities and challenges for innovation in infectious disease surveillance.

Buckee CO, Cardenas MIE, Corpuz J, Ghosh A, Haque F, Karim J, Mahmud AS, Maude RJ, Mensah K, Motaze NV, Nabaggala M, Metcalf CJE, Mioramalala SA, Mubiru F, Peak CM, Pramanik S, Rakotondramanga JM, Remera E, Sinha I, Sovannaroth S, Tatem AJ, Zaw W.

BMJ Glob Health. 2018 Feb 19;3(1):e000538. doi: 10.1136/bmjgh-2017-000538. eCollection 2018. No abstract available.


Prolonging herd immunity to cholera via vaccination: Accounting for human mobility and waning vaccine effects.

Peak CM, Reilly AL, Azman AS, Buckee CO.

PLoS Negl Trop Dis. 2018 Feb 28;12(2):e0006257. doi: 10.1371/journal.pntd.0006257. eCollection 2018 Feb.


Multinational patterns of seasonal asymmetry in human movement influence infectious disease dynamics.

Wesolowski A, Zu Erbach-Schoenberg E, Tatem AJ, Lourenço C, Viboud C, Charu V, Eagle N, Engø-Monsen K, Qureshi T, Buckee CO, Metcalf CJE.

Nat Commun. 2017 Dec 12;8(1):2069. doi: 10.1038/s41467-017-02064-4.


Quantifying connectivity between local Plasmodium falciparum malaria parasite populations using identity by descent.

Taylor AR, Schaffner SF, Cerqueira GC, Nkhoma SC, Anderson TJC, Sriprawat K, Pyae Phyo A, Nosten F, Neafsey DE, Buckee CO.

PLoS Genet. 2017 Oct 27;13(10):e1007065. doi: 10.1371/journal.pgen.1007065. eCollection 2017 Oct.


Connecting Mobility to Infectious Diseases: The Promise and Limits of Mobile Phone Data.

Wesolowski A, Buckee CO, Engø-Monsen K, Metcalf CJE.

J Infect Dis. 2016 Dec 1;214(suppl_4):S414-S420. doi: 10.1093/infdis/jiw273. Review.


Identifying climate drivers of infectious disease dynamics: recent advances and challenges ahead.

Metcalf CJE, Walter KS, Wesolowski A, Buckee CO, Shevliakova E, Tatem AJ, Boos WR, Weinberger DM, Pitzer VE.

Proc Biol Sci. 2017 Aug 16;284(1860). pii: 20170901. doi: 10.1098/rspb.2017.0901. Review.


Risk factors and short-term projections for serotype-1 poliomyelitis incidence in Pakistan: A spatiotemporal analysis.

Molodecky NA, Blake IM, O'Reilly KM, Wadood MZ, Safdar RM, Wesolowski A, Buckee CO, Bandyopadhyay AS, Okayasu H, Grassly NC.

PLoS Med. 2017 Jun 12;14(6):e1002323. doi: 10.1371/journal.pmed.1002323. eCollection 2017 Jun.


Comparing nonpharmaceutical interventions for containing emerging epidemics.

Peak CM, Childs LM, Grad YH, Buckee CO.

Proc Natl Acad Sci U S A. 2017 Apr 11;114(15):4023-4028. doi: 10.1073/pnas.1616438114. Epub 2017 Mar 28.


THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites.

Chang HH, Worby CJ, Yeka A, Nankabirwa J, Kamya MR, Staedke SG, Dorsey G, Murphy M, Neafsey DE, Jeffreys AE, Hubbart C, Rockett KA, Amato R, Kwiatkowski DP, Buckee CO, Greenhouse B.

PLoS Comput Biol. 2017 Jan 26;13(1):e1005348. doi: 10.1371/journal.pcbi.1005348. eCollection 2017 Jan.


Disrupting Mosquito Reproduction and Parasite Development for Malaria Control.

Childs LM, Cai FY, Kakani EG, Mitchell SN, Paton D, Gabrieli P, Buckee CO, Catteruccia F.

PLoS Pathog. 2016 Dec 15;12(12):e1006060. doi: 10.1371/journal.ppat.1006060. eCollection 2016 Dec.


Seasonal Population Movements and the Surveillance and Control of Infectious Diseases.

Buckee CO, Tatem AJ, Metcalf CJE.

Trends Parasitol. 2017 Jan;33(1):10-20. doi: 10.1016/ Epub 2016 Nov 16. Review.


Wolbachia infections in natural Anopheles populations affect egg laying and negatively correlate with Plasmodium development.

Shaw WR, Marcenac P, Childs LM, Buckee CO, Baldini F, Sawadogo SP, Dabiré RK, Diabaté A, Catteruccia F.

Nat Commun. 2016 May 31;7:11772. doi: 10.1038/ncomms11772.


Variation in infection length and superinfection enhance selection efficiency in the human malaria parasite.

Chang HH, Childs LM, Buckee CO.

Sci Rep. 2016 May 19;6:26370. doi: 10.1038/srep26370.


Introduction of rubella-containing-vaccine to Madagascar: implications for roll-out and local elimination.

Wesolowski A, Mensah K, Brook CE, Andrianjafimasy M, Winter A, Buckee CO, Razafindratsimandresy R, Tatem AJ, Heraud JM, Metcalf CJ.

J R Soc Interface. 2016 Apr;13(117). pii: 20151101. doi: 10.1098/rsif.2015.1101.


Ape parasite origins of human malaria virulence genes.

Larremore DB, Sundararaman SA, Liu W, Proto WR, Clauset A, Loy DE, Speede S, Plenderleith LJ, Sharp PM, Hahn BH, Rayner JC, Buckee CO.

Nat Commun. 2015 Oct 12;6:8368. doi: 10.1038/ncomms9368.


Impact of human mobility on the emergence of dengue epidemics in Pakistan.

Wesolowski A, Qureshi T, Boni MF, Sundsøy PR, Johansson MA, Rasheed SB, Engø-Monsen K, Buckee CO.

Proc Natl Acad Sci U S A. 2015 Sep 22;112(38):11887-92. doi: 10.1073/pnas.1504964112. Epub 2015 Sep 8.


Quantifying seasonal population fluxes driving rubella transmission dynamics using mobile phone data.

Wesolowski A, Metcalf CJ, Eagle N, Kombich J, Grenfell BT, Bjørnstad ON, Lessler J, Tatem AJ, Buckee CO.

Proc Natl Acad Sci U S A. 2015 Sep 1;112(35):11114-9. doi: 10.1073/pnas.1423542112. Epub 2015 Aug 17.


Vaccination Drives Changes in Metabolic and Virulence Profiles of Streptococcus pneumoniae.

Watkins ER, Penman BS, Lourenço J, Buckee CO, Maiden MC, Gupta S.

PLoS Pathog. 2015 Jul 16;11(7):e1005034. doi: 10.1371/journal.ppat.1005034. eCollection 2015 Jul.


Evaluating Spatial Interaction Models for Regional Mobility in Sub-Saharan Africa.

Wesolowski A, O'Meara WP, Eagle N, Tatem AJ, Buckee CO.

PLoS Comput Biol. 2015 Jul 9;11(7):e1004267. doi: 10.1371/journal.pcbi.1004267. eCollection 2015 Jul.


Modelling challenges in context: lessons from malaria, HIV, and tuberculosis.

Childs LM, Abuelezam NN, Dye C, Gupta S, Murray MB, Williams BG, Buckee CO.

Epidemics. 2015 Mar;10:102-7. doi: 10.1016/j.epidem.2015.02.002. Epub 2015 Feb 16.


Dissecting the determinants of malaria chronicity: why within-host models struggle to reproduce infection dynamics.

Childs LM, Buckee CO.

J R Soc Interface. 2015 Mar 6;12(104):20141379. doi: 10.1098/rsif.2014.1379.


Measuring the association between artemisinin-based case management and malaria incidence in southern Vietnam, 1991-2010.

Peak CM, Thuan PD, Britton A, Nguyen TD, Wolbers M, Thanh NV, Buckee CO, Boni MF.

Am J Trop Med Hyg. 2015 Apr;92(4):811-7. doi: 10.4269/ajtmh.14-0461. Epub 2015 Feb 9.


Quantifying the impact of accessibility on preventive healthcare in sub-Saharan Africa using mobile phone data.

Wesolowski A, O'Meara WP, Tatem AJ, Ndege S, Eagle N, Buckee CO.

Epidemiology. 2015 Mar;26(2):223-8. doi: 10.1097/EDE.0000000000000239.


Commentary: containing the ebola outbreak - the potential and challenge of mobile network data.

Wesolowski A, Buckee CO, Bengtsson L, Wetter E, Lu X, Tatem AJ.

PLoS Curr. 2014 Sep 29;6. pii: ecurrents.outbreaks.0177e7fcf52217b8b634376e2f3efc5e. doi: 10.1371/currents.outbreaks.0177e7fcf52217b8b634376e2f3efc5e. No abstract available.


Immune characterization of Plasmodium falciparum parasites with a shared genetic signature in a region of decreasing transmission.

Bei AK, Diouf A, Miura K, Larremore DB, Ribacke U, Tullo G, Moss EL, Neafsey DE, Daniels RF, Zeituni AE, Nosamiefan I, Volkman SK, Ahouidi AD, Ndiaye D, Dieye T, Mboup S, Buckee CO, Long CA, Wirth DF.

Infect Immun. 2015 Jan;83(1):276-85. doi: 10.1128/IAI.01979-14. Epub 2014 Nov 3.


Contrasting within- and between-host immune selection shapes Neisseria Opa repertoires.

Watkins ER, Grad YH, Gupta S, Buckee CO.

Sci Rep. 2014 Oct 9;4:6554. doi: 10.1038/srep06554.


Society: Protect privacy of mobile data.

Buckee CO.

Nature. 2014 Oct 2;514(7520):35. doi: 10.1038/514035c. No abstract available.


A Plasmodium falciparum histone deacetylase regulates antigenic variation and gametocyte conversion.

Coleman BI, Skillman KM, Jiang RHY, Childs LM, Altenhofen LM, Ganter M, Leung Y, Goldowitz I, Kafsack BFC, Marti M, Llinás M, Buckee CO, Duraisingh MT.

Cell Host Microbe. 2014 Aug 13;16(2):177-186. doi: 10.1016/j.chom.2014.06.014.


Quantifying travel behavior for infectious disease research: a comparison of data from surveys and mobile phones.

Wesolowski A, Stresman G, Eagle N, Stevenson J, Owaga C, Marube E, Bousema T, Drakeley C, Cox J, Buckee CO.

Sci Rep. 2014 Jul 14;4:5678. doi: 10.1038/srep05678.


Pathogen selection drives nonoverlapping associations between HLA loci.

Penman BS, Ashby B, Buckee CO, Gupta S.

Proc Natl Acad Sci U S A. 2013 Nov 26;110(48):19645-50. doi: 10.1073/pnas.1304218110. Epub 2013 Nov 13.


A network approach to analyzing highly recombinant malaria parasite genes.

Larremore DB, Clauset A, Buckee CO.

PLoS Comput Biol. 2013;9(10):e1003268. doi: 10.1371/journal.pcbi.1003268. Epub 2013 Oct 10.


Plasmodium falciparum var gene expression homogeneity as a marker of the host-parasite relationship under different levels of naturally acquired immunity to malaria.

Warimwe GM, Recker M, Kiragu EW, Buckee CO, Wambua J, Musyoki JN, Marsh K, Bull PC.

PLoS One. 2013 Jul 29;8(7):e70467. doi: 10.1371/journal.pone.0070467. Print 2013.


A sticky situation: the unexpected stability of malaria elimination.

Smith DL, Cohen JM, Chiyaka C, Johnston G, Gething PW, Gosling R, Buckee CO, Laxminarayan R, Hay SI, Tatem AJ.

Philos Trans R Soc Lond B Biol Sci. 2013 Jun 24;368(1623):20120145. doi: 10.1098/rstb.2012.0145. Print 2013 Aug 5.


Modeling the human infectious reservoir for malaria control: does heterogeneity matter?

Hansen E, Buckee CO.

Trends Parasitol. 2013 Jun;29(6):270-5. doi: 10.1016/ Epub 2013 Apr 15.


Expansion of host cellular niche can drive adaptation of a zoonotic malaria parasite to humans.

Lim C, Hansen E, DeSimone TM, Moreno Y, Junker K, Bei A, Brugnara C, Buckee CO, Duraisingh MT.

Nat Commun. 2013;4:1638. doi: 10.1038/ncomms2612.


Mobile phones and malaria: modeling human and parasite travel.

Buckee CO, Wesolowski A, Eagle NN, Hansen E, Snow RW.

Travel Med Infect Dis. 2013 Jan-Feb;11(1):15-22. doi: 10.1016/j.tmaid.2012.12.003. Epub 2013 Mar 9. Review.


The impact of biases in mobile phone ownership on estimates of human mobility.

Wesolowski A, Eagle N, Noor AM, Snow RW, Buckee CO.

J R Soc Interface. 2013 Feb 6;10(81):20120986. doi: 10.1098/rsif.2012.0986. Print 2013 Apr 6.


The use of census migration data to approximate human movement patterns across temporal scales.

Wesolowski A, Buckee CO, Pindolia DK, Eagle N, Smith DL, Garcia AJ, Tatem AJ.

PLoS One. 2013;8(1):e52971. doi: 10.1371/journal.pone.0052971. Epub 2013 Jan 9.


Quantifying the impact of human mobility on malaria.

Wesolowski A, Eagle N, Tatem AJ, Smith DL, Noor AM, Snow RW, Buckee CO.

Science. 2012 Oct 12;338(6104):267-70. doi: 10.1126/science.1223467.


The emergence and maintenance of sickle cell hotspots in the Mediterranean.

Penman BS, Gupta S, Buckee CO.

Infect Genet Evol. 2012 Oct;12(7):1543-50. doi: 10.1016/j.meegid.2012.06.001. Epub 2012 Jun 13.


Human movement data for malaria control and elimination strategic planning.

Pindolia DK, Garcia AJ, Wesolowski A, Smith DL, Buckee CO, Noor AM, Snow RW, Tatem AJ.

Malar J. 2012 Jun 18;11:205. doi: 10.1186/1475-2875-11-205. Review.


Heterogeneous mobile phone ownership and usage patterns in Kenya.

Wesolowski A, Eagle N, Noor AM, Snow RW, Buckee CO.

PLoS One. 2012;7(4):e35319. doi: 10.1371/journal.pone.0035319. Epub 2012 Apr 25.

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