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Items: 46

1.

Molecular dissection of the oncogenic role of ETS1 in the mesenchymal subtypes of head and neck squamous cell carcinoma.

Gluck C, Glathar A, Tsompana M, Nowak N, Garrett-Sinha LA, Buck MJ, Sinha S.

PLoS Genet. 2019 Jul 15;15(7):e1008250. doi: 10.1371/journal.pgen.1008250. [Epub ahead of print]

2.

Is the Oral Microbiome Associated with Blood Pressure in Older Women?

Gordon JH, LaMonte MJ, Genco RJ, Zhao J, Li L, Hovey KM, Tsompana M, Buck MJ, Andrews CA, Mcskimming DI, Zheng W, Sun Y, Wactawski-Wende J.

High Blood Press Cardiovasc Prev. 2019 Jun;26(3):217-225. doi: 10.1007/s40292-019-00322-8. Epub 2019 Jun 24.

PMID:
31236901
3.

Cohort profile: the Buffalo OsteoPerio microbiome prospective cohort study.

Banack HR, Genco RJ, LaMonte MJ, Millen AE, Buck MJ, Sun Y, Andrews CA, Hovey KM, Tsompana M, McSkimming DI, Zhao J, Wactawski-Wende J; OsteoPerio Study Group.

BMJ Open. 2018 Dec 4;8(12):e024263. doi: 10.1136/bmjopen-2018-024263.

4.

Defining TP53 pioneering capabilities with competitive nucleosome binding assays.

Yu X, Buck MJ.

Genome Res. 2019 Jan;29(1):107-115. doi: 10.1101/gr.234104.117. Epub 2018 Nov 8.

5.

Substantial Differences in the Subgingival Microbiome Measured by 16S Metagenomics According to Periodontitis Status in Older Women.

LaMonte MJ, Genco RJ, Zheng W, McSkimming DI, Andrews CA, Hovey KM, Li L, Sun Y, Buck MJ, Millen AE, Falkner KL, Wactawski-Wende J.

Dent J (Basel). 2018 Oct 19;6(4). pii: E58. doi: 10.3390/dj6040058.

6.

Gut microbiome may contribute to insulin resistance and systemic inflammation in obese rodents: a meta-analysis.

Jiao N, Baker SS, Nugent CA, Tsompana M, Cai L, Wang Y, Buck MJ, Genco RJ, Baker RD, Zhu R, Zhu L.

Physiol Genomics. 2018 Apr 1;50(4):244-254. doi: 10.1152/physiolgenomics.00114.2017. Epub 2018 Jan 26.

PMID:
29373083
7.

Suppressed hepatic bile acid signalling despite elevated production of primary and secondary bile acids in NAFLD.

Jiao N, Baker SS, Chapa-Rodriguez A, Liu W, Nugent CA, Tsompana M, Mastrandrea L, Buck MJ, Baker RD, Genco RJ, Zhu R, Zhu L.

Gut. 2018 Oct;67(10):1881-1891. doi: 10.1136/gutjnl-2017-314307. Epub 2017 Aug 3.

PMID:
28774887
8.

Trypanosome RNA Editing Mediator Complex proteins have distinct functions in gRNA utilization.

Simpson RM, Bruno AE, Chen R, Lott K, Tylec BL, Bard JE, Sun Y, Buck MJ, Read LK.

Nucleic Acids Res. 2017 Jul 27;45(13):7965-7983. doi: 10.1093/nar/gkx458.

9.
10.

High-throughput sequencing of partially edited trypanosome mRNAs reveals barriers to editing progression and evidence for alternative editing.

Simpson RM, Bruno AE, Bard JE, Buck MJ, Read LK.

RNA. 2016 May;22(5):677-95. doi: 10.1261/rna.055160.115. Epub 2016 Feb 23.

11.

An accurate and efficient experimental approach for characterization of the complex oral microbiota.

Zheng W, Tsompana M, Ruscitto A, Sharma A, Genco R, Sun Y, Buck MJ.

Microbiome. 2015 Oct 5;3:48. doi: 10.1186/s40168-015-0110-9.

12.

A global analysis of the complex landscape of isoforms and regulatory networks of p63 in human cells and tissues.

Sethi I, Romano RA, Gluck C, Smalley K, Vojtesek B, Buck MJ, Sinha S.

BMC Genomics. 2015 Aug 7;16:584. doi: 10.1186/s12864-015-1793-9.

13.

MicroRNA analysis suggests an additional level of feedback regulation in the NF-κB signaling cascade.

Mechtler P, Singhal R, Kichina JV, Bard JE, Buck MJ, Kandel ES.

Oncotarget. 2015 Jul 10;6(19):17097-106.

14.

Global Developmental Gene Programing Involves a Nuclear Form of Fibroblast Growth Factor Receptor-1 (FGFR1).

Terranova C, Narla ST, Lee YW, Bard J, Parikh A, Stachowiak EK, Tzanakakis ES, Buck MJ, Birkaya B, Stachowiak MK.

PLoS One. 2015 Apr 29;10(4):e0123380. doi: 10.1371/journal.pone.0123380. eCollection 2015.

15.

An automated method for efficient, accurate and reproducible construction of RNA-seq libraries.

Tsompana M, Valiyaparambil S, Bard J, Marzullo B, Nowak N, Buck MJ.

BMC Res Notes. 2015 Apr 3;8:124. doi: 10.1186/s13104-015-1089-9.

16.
17.

Chromatin mediation of a transcriptional memory effect in yeast.

Paul E, Tirosh I, Lai W, Buck MJ, Palumbo MJ, Morse RH.

G3 (Bethesda). 2015 Mar 5;5(5):829-38. doi: 10.1534/g3.115.017418.

18.

Chromatin accessibility: a window into the genome.

Tsompana M, Buck MJ.

Epigenetics Chromatin. 2014 Nov 20;7(1):33. doi: 10.1186/1756-8935-7-33. eCollection 2014. Review.

19.

Role of chromatin and transcriptional co-regulators in mediating p63-genome interactions in keratinocytes.

Sethi I, Sinha S, Buck MJ.

BMC Genomics. 2014 Nov 29;15:1042. doi: 10.1186/1471-2164-15-1042.

20.

Iron-responsive chromatin remodelling and MAPK signalling enhance adhesion in Candida albicans.

Puri S, Lai WK, Rizzo JM, Buck MJ, Edgerton M.

Mol Microbiol. 2014 Jul;93(2):291-305. doi: 10.1111/mmi.12659. Epub 2014 Jun 15.

21.

Alterations in chromatin accessibility and DNA methylation in clear cell renal cell carcinoma.

Buck MJ, Raaijmakers LM, Ramakrishnan S, Wang D, Valiyaparambil S, Liu S, Nowak NJ, Pili R.

Oncogene. 2014 Oct 9;33(41):4961-5. doi: 10.1038/onc.2013.455. Epub 2013 Nov 4.

PMID:
24186201
22.

Inhibition of monomethylarsonous acid (MMA(III))-induced cell malignant transformation through restoring dysregulated histone acetylation.

Ge Y, Gong Z, Olson JR, Xu P, Buck MJ, Ren X.

Toxicology. 2013 Oct 4;312:30-5. doi: 10.1016/j.tox.2013.07.011. Epub 2013 Jul 26.

PMID:
23891734
23.

An integrative approach to understanding the combinatorial histone code at functional elements.

Lai WK, Buck MJ.

Bioinformatics. 2013 Sep 15;29(18):2231-7. doi: 10.1093/bioinformatics/btt382. Epub 2013 Jul 2.

PMID:
23821650
24.

FOXO1 regulates expression of a microRNA cluster on X chromosome.

Singhal R, Bard JE, Nowak NJ, Buck MJ, Kandel ES.

Aging (Albany NY). 2013 May;5(5):347-56.

25.

Discovering chromatin motifs using FAIRE sequencing and the human diploid genome.

Yang CC, Buck MJ, Chen MH, Chen YF, Lan HC, Chen JJ, Cheng C, Liu CC.

BMC Genomics. 2013 May 8;14:310. doi: 10.1186/1471-2164-14-310.

26.

Key principles and clinical applications of "next-generation" DNA sequencing.

Rizzo JM, Buck MJ.

Cancer Prev Res (Phila). 2012 Jul;5(7):887-900. doi: 10.1158/1940-6207.CAPR-11-0432. Epub 2012 May 22. Review.

27.

Chromatin architectures at fission yeast transcriptional promoters and replication origins.

Givens RM, Lai WK, Rizzo JM, Bard JE, Mieczkowski PA, Leatherwood J, Huberman JA, Buck MJ.

Nucleic Acids Res. 2012 Aug;40(15):7176-89. doi: 10.1093/nar/gks351. Epub 2012 May 9.

28.

Standardized collection of MNase-seq experiments enables unbiased dataset comparisons.

Rizzo JM, Bard JE, Buck MJ.

BMC Mol Biol. 2012 May 6;13:15. doi: 10.1186/1471-2199-13-15.

29.

ArchTEx: accurate extraction and visualization of next-generation sequence data.

Lai WK, Bard JE, Buck MJ.

Bioinformatics. 2012 Apr 1;28(7):1021-3. doi: 10.1093/bioinformatics/bts063. Epub 2012 Feb 2.

PMID:
22302569
30.

Integrity of chromatin and replicating DNA in nuclei released from fission yeast by semi-automated grinding in liquid nitrogen.

Givens RM, Mesner LD, Hamlin JL, Buck MJ, Huberman JA.

BMC Res Notes. 2011 Nov 16;4:499. doi: 10.1186/1756-0500-4-499.

31.

Tup1 stabilizes promoter nucleosome positioning and occupancy at transcriptionally plastic genes.

Rizzo JM, Mieczkowski PA, Buck MJ.

Nucleic Acids Res. 2011 Nov 1;39(20):8803-19. doi: 10.1093/nar/gkr557. Epub 2011 Jul 23.

32.

The stress response factors Yap6, Cin5, Phd1, and Skn7 direct targeting of the conserved co-repressor Tup1-Ssn6 in S. cerevisiae.

Hanlon SE, Rizzo JM, Tatomer DC, Lieb JD, Buck MJ.

PLoS One. 2011 Apr 28;6(4):e19060. doi: 10.1371/journal.pone.0019060.

33.

ArchAlign: coordinate-free chromatin alignment reveals novel architectures.

Lai WK, Buck MJ.

Genome Biol. 2010;11(12):R126. doi: 10.1186/gb-2010-11-12-r126. Epub 2010 Dec 23.

34.

Genome-wide search identifies Ccnd2 as a direct transcriptional target of Elf5 in mouse mammary gland.

Escamilla-Hernandez R, Chakrabarti R, Romano RA, Smalley K, Zhu Q, Lai W, Halfon MS, Buck MJ, Sinha S.

BMC Mol Biol. 2010 Sep 10;11:68. doi: 10.1186/1471-2199-11-68.

35.

Improved ChIP-chip analysis by a mixture model approach.

Sun W, Buck MJ, Patel M, Davis IJ.

BMC Bioinformatics. 2009 Jun 7;10:173. doi: 10.1186/1471-2105-10-173.

36.

Loss of a histone deacetylase dramatically alters the genomic distribution of Spo11p-catalyzed DNA breaks in Saccharomyces cerevisiae.

Mieczkowski PA, Dominska M, Buck MJ, Lieb JD, Petes TD.

Proc Natl Acad Sci U S A. 2007 Mar 6;104(10):3955-60. Epub 2007 Feb 28.

37.

A chromatin-mediated mechanism for specification of conditional transcription factor targets.

Buck MJ, Lieb JD.

Nat Genet. 2006 Dec;38(12):1446-51. Epub 2006 Nov 12.

38.

The RNA polymerase II kinase Ctk1 regulates positioning of a 5' histone methylation boundary along genes.

Xiao T, Shibata Y, Rao B, Laribee RN, O'Rourke R, Buck MJ, Greenblatt JF, Krogan NJ, Lieb JD, Strahl BD.

Mol Cell Biol. 2007 Jan;27(2):721-31. Epub 2006 Nov 6.

39.
40.

ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data.

Buck MJ, Nobel AB, Lieb JD.

Genome Biol. 2005;6(11):R97. Epub 2005 Oct 19.

41.

Networks of coevolving sites in structural and functional domains of serpin proteins.

Buck MJ, Atchley WR.

Mol Biol Evol. 2005 Jul;22(7):1627-34. Epub 2005 Apr 27.

PMID:
15858204
42.
43.

Phylogenetic analysis of plant basic helix-loop-helix proteins.

Buck MJ, Atchley WR.

J Mol Evol. 2003 Jun;56(6):742-50.

PMID:
12911037
44.

Coordinate expression of the PDK4 gene: a means of regulating fuel selection in a hibernating mammal.

Buck MJ, Squire TL, Andrews MT.

Physiol Genomics. 2002 Feb 11;8(1):5-13.

PMID:
11842126
45.

[Integration of patient exercise/physical therapy in the rehabilitation team].

Buck MJ.

Rehabilitation (Stuttg). 1992 Aug;31(3):154-6. German.

PMID:
1410777
46.

Inhibition of growth and regression of a transplantable rat chondrosarcoma by three retinoids.

Trown PW, Buck MJ, Hansen R.

Cancer Treat Rep. 1976 Nov;60(11):1647-53.

PMID:
1021235

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