Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 134

1.

Racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy.

Serrano MG, Parikh HI, Brooks JP, Edwards DJ, Arodz TJ, Edupuganti L, Huang B, Girerd PH, Bokhari YA, Bradley SP, Brooks JL, Dickinson MR, Drake JI, Duckworth RA 3rd, Fong SS, Glascock AL, Jean S, Jimenez NR, Khoury J, Koparde VN, Lara AM, Lee V, Matveyev AV, Milton SH, Mistry SD, Rozycki SK, Sheth NU, Smirnova E, Vivadelli SC, Wijesooriya NR, Xu J, Xu P, Chaffin DO, Sexton AL, Gravett MG, Rubens CE, Hendricks-Muñoz KD, Jefferson KK, Strauss JF 3rd, Fettweis JM, Buck GA.

Nat Med. 2019 Jun;25(6):1001-1011. doi: 10.1038/s41591-019-0465-8. Epub 2019 May 29.

PMID:
31142850
2.

The vaginal microbiome and preterm birth.

Fettweis JM, Serrano MG, Brooks JP, Edwards DJ, Girerd PH, Parikh HI, Huang B, Arodz TJ, Edupuganti L, Glascock AL, Xu J, Jimenez NR, Vivadelli SC, Fong SS, Sheth NU, Jean S, Lee V, Bokhari YA, Lara AM, Mistry SD, Duckworth RA 3rd, Bradley SP, Koparde VN, Orenda XV, Milton SH, Rozycki SK, Matveyev AV, Wright ML, Huzurbazar SV, Jackson EM, Smirnova E, Korlach J, Tsai YC, Dickinson MR, Brooks JL, Drake JI, Chaffin DO, Sexton AL, Gravett MG, Rubens CE, Wijesooriya NR, Hendricks-Muñoz KD, Jefferson KK, Strauss JF 3rd, Buck GA.

Nat Med. 2019 Jun;25(6):1012-1021. doi: 10.1038/s41591-019-0450-2. Epub 2019 May 29.

PMID:
31142849
3.

Impact of Herpes Simplex Virus Type 2 and Human Immunodeficiency Virus Dual Infection on Female Genital Tract Mucosal Immunity and the Vaginal Microbiome.

Keller MJ, Huber A, Espinoza L, Serrano MG, Parikh HI, Buck GA, Gold JA, Wu Y, Wang T, Herold BC.

J Infect Dis. 2019 Apr 27. pii: jiz203. doi: 10.1093/infdis/jiz203. [Epub ahead of print]

PMID:
31111902
4.

Relationship between vitamin D status and the vaginal microbiome during pregnancy.

Jefferson KK, Parikh HI, Garcia EM, Edwards DJ, Serrano MG, Hewison M, Shary JR, Powell AM, Hollis BW, Fettweis JM, Strauss Iii JF, Buck GA, Wagner CL.

J Perinatol. 2019 Jun;39(6):824-836. doi: 10.1038/s41372-019-0343-8. Epub 2019 Mar 11.

PMID:
30858609
5.

Does the human placenta delivered at term have a microbiota? Results of cultivation, quantitative real-time PCR, 16S rRNA gene sequencing, and metagenomics.

Theis KR, Romero R, Winters AD, Greenberg JM, Gomez-Lopez N, Alhousseini A, Bieda J, Maymon E, Pacora P, Fettweis JM, Buck GA, Jefferson KK, Strauss JF 3rd, Erez O, Hassan SS.

Am J Obstet Gynecol. 2019 Mar;220(3):267.e1-267.e39. doi: 10.1016/j.ajog.2018.10.018.

PMID:
30832984
6.

Genomic comparison of Trypanosoma conorhini and Trypanosoma rangeli to Trypanosoma cruzi strains of high and low virulence.

Bradwell KR, Koparde VN, Matveyev AV, Serrano MG, Alves JMP, Parikh H, Huang B, Lee V, Espinosa-Alvarez O, Ortiz PA, Costa-Martins AG, Teixeira MMG, Buck GA.

BMC Genomics. 2018 Oct 24;19(1):770. doi: 10.1186/s12864-018-5112-0.

7.

Genome-wide identification of evolutionarily conserved Small Heat-Shock and eight other proteins bearing α-crystallin domain-like in kinetoplastid protists.

Costa-Martins AG, Lima L, Alves JMP, Serrano MG, Buck GA, Camargo EP, Teixeira MMG.

PLoS One. 2018 Oct 22;13(10):e0206012. doi: 10.1371/journal.pone.0206012. eCollection 2018.

8.

Gut Colonization with Methanogenic Archaea Lowers Plasma Trimethylamine N-oxide Concentrations in Apolipoprotein e-/- Mice.

Ramezani A, Nolin TD, Barrows IR, Serrano MG, Buck GA, Regunathan-Shenk R, West RE 3rd, Latham PS, Amdur R, Raj DS.

Sci Rep. 2018 Oct 3;8(1):14752. doi: 10.1038/s41598-018-33018-5.

9.

Trypanosoma rangeli is phylogenetically closer to Old World trypanosomes than to Trypanosoma cruzi.

Espinosa-Álvarez O, Ortiz PA, Lima L, Costa-Martins AG, Serrano MG, Herder S, Buck GA, Camargo EP, Hamilton PB, Stevens JR, Teixeira MMG.

Int J Parasitol. 2018 Jun;48(7):569-584. doi: 10.1016/j.ijpara.2017.12.008. Epub 2018 Mar 13.

PMID:
29544703
10.

Association between statin use, the vaginal microbiome, and Gardnerella vaginalis vaginolysin-mediated cytotoxicity.

Abdelmaksoud AA, Girerd PH, Garcia EM, Brooks JP, Leftwich LM, Sheth NU, Bradley SP, Serrano MG, Fettweis JM, Huang B, Strauss JF 3rd, Buck GA, Jefferson KK.

PLoS One. 2017 Aug 28;12(8):e0183765. doi: 10.1371/journal.pone.0183765. eCollection 2017.

11.

Sequence homology between HLA-bound cytomegalovirus and human peptides: A potential trigger for alloreactivity.

Hall CE, Koparde VN, Jameson-Lee M, Elnasseh AG, Scalora AF, Kobulnicky DJ, Serrano MG, Roberts CH, Buck GA, Neale MC, Nixon DE, Toor AA.

PLoS One. 2017 Aug 11;12(8):e0178763. doi: 10.1371/journal.pone.0178763. eCollection 2017.

12.

Changes in vaginal community state types reflect major shifts in the microbiome.

Brooks JP, Buck GA, Chen G, Diao L, Edwards DJ, Fettweis JM, Huzurbazar S, Rakitin A, Satten GA, Smirnova E, Waks Z, Wright ML, Yanover C, Zhou YH.

Microb Ecol Health Dis. 2017 Apr 10;28(1):1303265. doi: 10.1080/16512235.2017.1303265. eCollection 2017.

13.

The Evolutionary Loss of RNAi Key Determinants in Kinetoplastids as a Multiple Sporadic Phenomenon.

Matveyev AV, Alves JM, Serrano MG, Lee V, Lara AM, Barton WA, Costa-Martins AG, Beverley SM, Camargo EP, Teixeira MM, Buck GA.

J Mol Evol. 2017 Mar;84(2-3):104-115. doi: 10.1007/s00239-017-9780-1. Epub 2017 Feb 16.

14.

Effects of combined oral contraceptives, depot medroxyprogesterone acetate and the levonorgestrel-releasing intrauterine system on the vaginal microbiome.

Brooks JP, Edwards DJ, Blithe DL, Fettweis JM, Serrano MG, Sheth NU, Strauss JF 3rd, Buck GA, Jefferson KK.

Contraception. 2017 Apr;95(4):405-413. doi: 10.1016/j.contraception.2016.11.006. Epub 2016 Nov 29.

15.

MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing.

Parikh HI, Koparde VN, Bradley SP, Buck GA, Sheth NU.

BMC Bioinformatics. 2016 Dec 1;17(1):491.

16.

Cryptosporidium Priming Is More Effective than Vaccine for Protection against Cryptosporidiosis in a Murine Protein Malnutrition Model.

Bartelt LA, Bolick DT, Kolling GL, Roche JK, Zaenker EI, Lara AM, Noronha FJ, Cowardin CA, Moore JH, Turner JR, Warren CA, Buck GA, Guerrant RL.

PLoS Negl Trop Dis. 2016 Jul 28;10(7):e0004820. doi: 10.1371/journal.pntd.0004820. eCollection 2016 Jul.

17.

Comparison of Lactobacillus crispatus isolates from Lactobacillus-dominated vaginal microbiomes with isolates from microbiomes containing bacterial vaginosis-associated bacteria.

Abdelmaksoud AA, Koparde VN, Sheth NU, Serrano MG, Glascock AL, Fettweis JM, Strauss JF, Buck GA, Jefferson KK.

Microbiology. 2016 Mar;162(3):466-475. doi: 10.1099/mic.0.000238. Epub 2016 Jan 8.

18.

Dynamical System Modeling to Simulate Donor T Cell Response to Whole Exome Sequencing-Derived Recipient Peptides Demonstrates Different Alloreactivity Potential in HLA-Matched and -Mismatched Donor-Recipient Pairs.

Abdul Razzaq B, Scalora A, Koparde VN, Meier J, Mahmood M, Salman S, Jameson-Lee M, Serrano MG, Sheth N, Voelkner M, Kobulnicky DJ, Roberts CH, Ferreira-Gonzalez A, Manjili MH, Buck GA, Neale MC, Toor AA.

Biol Blood Marrow Transplant. 2016 May;22(5):850-61. doi: 10.1016/j.bbmt.2015.11.1103. Epub 2015 Dec 11.

19.

Revisiting the reference genomes of human pathogenic Cryptosporidium species: reannotation of C. parvum Iowa and a new C. hominis reference.

Isaza JP, Galván AL, Polanco V, Huang B, Matveyev AV, Serrano MG, Manque P, Buck GA, Alzate JF.

Sci Rep. 2015 Nov 9;5:16324. doi: 10.1038/srep16324.

20.

Genetic diversity of Trypanosoma cruzi in bats, and multilocus phylogenetic and phylogeographical analyses supporting Tcbat as an independent DTU (discrete typing unit).

Lima L, Espinosa-Álvarez O, Ortiz PA, Trejo-Varón JA, Carranza JC, Pinto CM, Serrano MG, Buck GA, Camargo EP, Teixeira MM.

Acta Trop. 2015 Nov;151:166-77. doi: 10.1016/j.actatropica.2015.07.015. Epub 2015 Jul 19.

PMID:
26200788
21.

Skin-to-Skin Care and the Development of the Preterm Infant Oral Microbiome.

Hendricks-Muñoz KD, Xu J, Parikh HI, Xu P, Fettweis JM, Kim Y, Louie M, Buck GA, Thacker LR, Sheth NU.

Am J Perinatol. 2015 Nov;32(13):1205-16. doi: 10.1055/s-0035-1552941. Epub 2015 May 22.

22.

Phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences.

Caballero ZC, Costa-Martins AG, Ferreira RC, P Alves JM, Serrano MG, Camargo EP, Buck GA, Minoprio P, G Teixeira MM.

Parasit Vectors. 2015 Apr 12;8:222. doi: 10.1186/s13071-015-0829-y.

23.

The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies.

Brooks JP, Edwards DJ, Harwich MD Jr, Rivera MC, Fettweis JM, Serrano MG, Reris RA, Sheth NU, Huang B, Girerd P; Vaginal Microbiome Consortium, Strauss JF 3rd, Jefferson KK, Buck GA.

BMC Microbiol. 2015 Mar 21;15:66. doi: 10.1186/s12866-015-0351-6.

24.

Identification of a gene in Mycoplasma hominis associated with preterm birth and microbial burden in intraamniotic infection.

Allen-Daniels MJ, Serrano MG, Pflugner LP, Fettweis JM, Prestosa MA, Koparde VN, Brooks JP, Strauss JF 3rd, Romero R, Chaiworapongsa T, Eschenbach DA, Buck GA, Jefferson KK.

Am J Obstet Gynecol. 2015 Jun;212(6):779.e1-779.e13. doi: 10.1016/j.ajog.2015.01.032. Epub 2015 Jan 28.

25.

Stem cell transplantation as a dynamical system: are clinical outcomes deterministic?

Toor AA, Kobulnicky JD, Salman S, Roberts CH, Jameson-Lee M, Meier J, Scalora A, Sheth N, Koparde V, Serrano M, Buck GA, Clark WB, McCarty JM, Chung HM, Manjili MH, Sabo RT, Neale MC.

Front Immunol. 2014 Dec 3;5:613. doi: 10.3389/fimmu.2014.00613. eCollection 2014. Review.

26.

The changing landscape of the vaginal microbiome.

Huang B, Fettweis JM, Brooks JP, Jefferson KK, Buck GA.

Clin Lab Med. 2014 Dec;34(4):747-61. doi: 10.1016/j.cll.2014.08.006. Epub 2014 Sep 15. Review.

27.

In silico Derivation of HLA-Specific Alloreactivity Potential from Whole Exome Sequencing of Stem-Cell Transplant Donors and Recipients: Understanding the Quantitative Immunobiology of Allogeneic Transplantation.

Jameson-Lee M, Koparde V, Griffith P, Scalora AF, Sampson JK, Khalid H, Sheth NU, Batalo M, Serrano MG, Roberts CH, Hess ML, Buck GA, Neale MC, Manjili MH, Toor AA.

Front Immunol. 2014 Nov 6;5:529. doi: 10.3389/fimmu.2014.00529. eCollection 2014. Review.

28.

An emerging mycoplasma associated with trichomoniasis, vaginal infection and disease.

Fettweis JM, Serrano MG, Huang B, Brooks JP, Glascock AL, Sheth NU; Vaginal Microbiome Consortium, Strauss JF 3rd, Jefferson KK, Buck GA.

PLoS One. 2014 Oct 22;9(10):e110943. doi: 10.1371/journal.pone.0110943. eCollection 2014.

29.

Differences in vaginal microbiome in African American women versus women of European ancestry.

Fettweis JM, Brooks JP, Serrano MG, Sheth NU, Girerd PH, Edwards DJ, Strauss JF, The Vaginal Microbiome Consortium, Jefferson KK, Buck GA.

Microbiology. 2014 Oct;160(Pt 10):2272-2282. doi: 10.1099/mic.0.081034-0. Epub 2014 Jul 29.

30.

BOTUX: bayesian-like operational taxonomic unit examiner.

Koparde VN, Adkins RS, Fettweis JM, Serrano MG, Buck GA, Reimers MA, Sheth NU.

Int J Comput Biol Drug Des. 2014;7(2-3):130-45. doi: 10.1504/IJCBDD.2014.061652. Epub 2014 May 28.

31.

Whole exome sequencing to estimate alloreactivity potential between donors and recipients in stem cell transplantation.

Sampson JK, Sheth NU, Koparde VN, Scalora AF, Serrano MG, Lee V, Roberts CH, Jameson-Lee M, Ferreira-Gonzalez A, Manjili MH, Buck GA, Neale MC, Toor AA.

Br J Haematol. 2014 Aug;166(4):566-70. doi: 10.1111/bjh.12898. Epub 2014 Apr 18.

32.

Arabidopsis transcriptome analysis reveals key roles of melatonin in plant defense systems.

Weeda S, Zhang N, Zhao X, Ndip G, Guo Y, Buck GA, Fu C, Ren S.

PLoS One. 2014 Mar 28;9(3):e93462. doi: 10.1371/journal.pone.0093462. eCollection 2014.

33.

Biosynthesis of vitamins and cofactors in bacterium-harbouring trypanosomatids depends on the symbiotic association as revealed by genomic analyses.

Klein CC, Alves JM, Serrano MG, Buck GA, Vasconcelos AT, Sagot MF, Teixeira MM, Camargo EP, Motta MC.

PLoS One. 2013 Nov 19;8(11):e79786. doi: 10.1371/journal.pone.0079786. eCollection 2013.

34.

Endosymbiosis in trypanosomatids: the genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers.

Alves JM, Klein CC, da Silva FM, Costa-Martins AG, Serrano MG, Buck GA, Vasconcelos AT, Sagot MF, Teixeira MM, Motta MC, Camargo EP.

BMC Evol Biol. 2013 Sep 9;13:190. doi: 10.1186/1471-2148-13-190.

35.

Clostridium scindens: a human gut microbe with a high potential to convert glucocorticoids into androgens.

Ridlon JM, Ikegawa S, Alves JM, Zhou B, Kobayashi A, Iida T, Mitamura K, Tanabe G, Serrano M, De Guzman A, Cooper P, Buck GA, Hylemon PB.

J Lipid Res. 2013 Sep;54(9):2437-49. doi: 10.1194/jlr.M038869. Epub 2013 Jun 15.

36.

Comparative genomics of cryptosporidium.

Mazurie AJ, Alves JM, Ozaki LS, Zhou S, Schwartz DC, Buck GA.

Int J Genomics. 2013;2013:832756. doi: 10.1155/2013/832756. Epub 2013 May 2.

37.

Proteomic analysis reveals differentially expressed proteins in macrophages infected with Leishmania amazonensis or Leishmania major.

Menezes JP, Almeida TF, Petersen AL, Guedes CE, Mota MS, Lima JG, Palma LC, Buck GA, Krieger MA, Probst CM, Veras PS.

Microbes Infect. 2013 Jul-Aug;15(8-9):579-91. doi: 10.1016/j.micinf.2013.04.005. Epub 2013 Apr 28.

38.

Genome evolution and phylogenomic analysis of Candidatus Kinetoplastibacterium, the betaproteobacterial endosymbionts of Strigomonas and Angomonas.

Alves JM, Serrano MG, Maia da Silva F, Voegtly LJ, Matveyev AV, Teixeira MM, Camargo EP, Buck GA.

Genome Biol Evol. 2013;5(2):338-50. doi: 10.1093/gbe/evt012.

39.

Species-level classification of the vaginal microbiome.

Fettweis JM, Serrano MG, Sheth NU, Mayer CM, Glascock AL, Brooks JP, Jefferson KK; Vaginal Microbiome Consortium (additional members), Buck GA.

BMC Genomics. 2012;13 Suppl 8:S17. doi: 10.1186/1471-2164-13-S8-S17. Epub 2012 Dec 17.

40.

Genomic sequence analysis and characterization of Sneathia amnii sp. nov.

Harwich MD Jr, Serrano MG, Fettweis JM, Alves JM, Reimers MA; Vaginal Microbiome Consortium (additional members), Buck GA, Jefferson KK.

BMC Genomics. 2012;13 Suppl 8:S4. doi: 10.1186/1471-2164-13-S8-S4. Epub 2012 Dec 17.

41.

Repertoire, genealogy and genomic organization of cruzipain and homologous genes in Trypanosoma cruzi, T. cruzi-like and other trypanosome species.

Lima L, Ortiz PA, da Silva FM, Alves JM, Serrano MG, Cortez AP, Alfieri SC, Buck GA, Teixeira MM.

PLoS One. 2012;7(6):e38385. doi: 10.1371/journal.pone.0038385. Epub 2012 Jun 7.

42.

A new era of the vaginal microbiome: advances using next-generation sequencing.

Fettweis JM, Serrano MG, Girerd PH, Jefferson KK, Buck GA.

Chem Biodivers. 2012 May;9(5):965-76. doi: 10.1002/cbdv.201100359. Review.

43.

Systems biology: molecular networks and disease.

Zhao Z, Kier LB, Buck GA.

Chem Biodivers. 2012 May;9(5):841-7. doi: 10.1002/cbdv.201100396. No abstract available.

PMID:
22589086
44.

Identification and characterization of a novel calcium-activated apyrase from Cryptosporidium parasites and its potential role in pathogenesis.

Manque PA, Woehlbier U, Lara AM, Tenjo F, Alves JM, Buck GA.

PLoS One. 2012;7(2):e31030. doi: 10.1371/journal.pone.0031030. Epub 2012 Feb 7.

45.

Genome-wide essential gene identification in Streptococcus sanguinis.

Xu P, Ge X, Chen L, Wang X, Dou Y, Xu JZ, Patel JR, Stone V, Trinh M, Evans K, Kitten T, Bonchev D, Buck GA.

Sci Rep. 2011;1:125. doi: 10.1038/srep00125. Epub 2011 Oct 20.

46.

A comparison of two distinct murine macrophage gene expression profiles in response to Leishmania amazonensis infection.

Probst CM, Silva RA, Menezes JP, Almeida TF, Gomes IN, Dallabona AC, Ozaki LS, Buck GA, Pavoni DP, Krieger MA, Veras PS.

BMC Microbiol. 2012 Feb 9;12:22. doi: 10.1186/1471-2180-12-22.

47.

Identification and immunological characterization of three potential vaccinogens against Cryptosporidium species.

Manque PA, Tenjo F, Woehlbier U, Lara AM, Serrano MG, Xu P, Alves JM, Smeltz RB, Conrad DH, Buck GA.

Clin Vaccine Immunol. 2011 Nov;18(11):1796-802. doi: 10.1128/CVI.05197-11. Epub 2011 Sep 14.

48.

Identification and phylogenetic analysis of heme synthesis genes in trypanosomatids and their bacterial endosymbionts.

Alves JM, Voegtly L, Matveyev AV, Lara AM, da Silva FM, Serrano MG, Buck GA, Teixeira MM, Camargo EP.

PLoS One. 2011;6(8):e23518. doi: 10.1371/journal.pone.0023518. Epub 2011 Aug 10.

49.

Trypanosoma cruzi infection induces a global host cell response in cardiomyocytes.

Manque PA, Probst CM, Pereira MC, Rampazzo RC, Ozaki LS, Pavoni DP, Silva Neto DT, Carvalho MR, Xu P, Serrano MG, Alves JM, Meirelles Mde N, Goldenberg S, Krieger MA, Buck GA.

Infect Immun. 2011 May;79(5):1855-62. doi: 10.1128/IAI.00643-10. Epub 2011 Feb 22. Erratum in: Infect Immun. 2011 Aug;79(8):3471. Probst, Christian [corrected to Probst, Christian M]; Ozaki, L Shozo [corrected to Ozaki, Luiz Shozo].

50.

Sera of chagasic patients react with antigens from the tomato parasite Phytomonas serpens.

Graça-de Souza VK, Monteiro-Góes V, Manque P, Souza TA, Corrêa PR, Buck GA, Ávila AR, Yamauchi LM, Pinge-Filho P, Goldenberg S, Krieger MA, Yamada-Ogatta SF.

Biol Res. 2010;43(2):233-41. doi: /S0716-97602010000200011. Epub 2010 Sep 24.

Supplemental Content

Support Center