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Decay Pathways of Thymine Revisited.

Pilles BM, Maerz B, Chen J, Bucher DB, Gilch P, Kohler B, Zinth W, Fingerhut BP, Schreier WJ.

J Phys Chem A. 2018 May 31;122(21):4819-4828. doi: 10.1021/acs.jpca.8b02050. Epub 2018 May 21.


A PRDX1-p38α heterodimer amplifies MET-driven invasion of IDH-wildtype and IDH-mutant gliomas.

Wirthschaft P, Bode J, Simon AEM, Hoffmann E, van Laack R, Krüwel T, Dietrich F, Bucher D, Hahn A, Sahm F, Breckwoldt MO, Kurz FT, Hielscher T, Fischer B, Dross N, Ruiz de Almodovar C, von Deimling A, Herold-Mende C, Plass C, Boulant S, Wiestler B, Reifenberger G, Lichter P, Wick W, Tews B.

Int J Cancer. 2018 Mar 26. doi: 10.1002/ijc.31404. [Epub ahead of print]


Clathrin-adaptor ratio and membrane tension regulate the flat-to-curved transition of the clathrin coat during endocytosis.

Bucher D, Frey F, Sochacki KA, Kummer S, Bergeest JP, Godinez WJ, Kräusslich HG, Rohr K, Taraska JW, Schwarz US, Boulant S.

Nat Commun. 2018 Mar 16;9(1):1109. doi: 10.1038/s41467-018-03533-0.


High-resolution magnetic resonance spectroscopy using a solid-state spin sensor.

Glenn DR, Bucher DB, Lee J, Lukin MD, Park H, Walsworth RL.

Nature. 2018 Mar 14;555(7696):351-354. doi: 10.1038/nature25781.


Shedding Light on Important Waters for Drug Design: Simulations versus Grid-Based Methods.

Bucher D, Stouten P, Triballeau N.

J Chem Inf Model. 2018 Mar 26;58(3):692-699. doi: 10.1021/acs.jcim.7b00642. Epub 2018 Mar 5.


Ionic mechanisms underlying history-dependence of conduction delay in an unmyelinated axon.

Zhang Y, Bucher D, Nadim F.

Elife. 2017 Jul 10;6. pii: e25382. doi: 10.7554/eLife.25382.


Removal of endogenous neuromodulators in a small motor network enhances responsiveness to neuromodulation.

Lett KM, Garcia VJ, Temporal S, Bucher D, Schulz DJ.

J Neurophysiol. 2017 Sep 1;118(3):1749-1761. doi: 10.1152/jn.00383.2017. Epub 2017 Jun 28.


Thermal tolerance and preference of exploited turbinid snails near their range limit in a global warming hotspot.

Lah RA, Benkendorff K, Bucher D.

J Therm Biol. 2017 Feb;64:100-108. doi: 10.1016/j.jtherbio.2017.01.008. Epub 2017 Jan 23.


Functional roles of short-term synaptic plasticity with an emphasis on inhibition.

Anwar H, Li X, Bucher D, Nadim F.

Curr Opin Neurobiol. 2017 Apr;43:71-78. doi: 10.1016/j.conb.2017.01.002. Epub 2017 Jan 22. Review.


Investigation of nutritional properties of three species of marine turban snails for human consumption.

Ab Lah R, Smith J, Savins D, Dowell A, Bucher D, Benkendorff K.

Food Sci Nutr. 2016 Apr 5;5(1):14-30. doi: 10.1002/fsn3.360. eCollection 2017 Jan.


The complexity of small circuits: the stomatogastric nervous system.

Daur N, Nadim F, Bucher D.

Curr Opin Neurobiol. 2016 Dec;41:1-7. doi: 10.1016/j.conb.2016.07.005. Epub 2016 Jul 21. Review.


Reovirus intermediate subviral particles constitute a strategy to infect intestinal epithelial cells by exploiting TGF-β dependent pro-survival signaling.

Stanifer ML, Rippert A, Kazakov A, Willemsen J, Bucher D, Bender S, Bartenschlager R, Binder M, Boulant S.

Cell Microbiol. 2016 Dec;18(12):1831-1845. doi: 10.1111/cmi.12626. Epub 2016 Jul 11.


Tissue localization of GM-CSF receptor in bovine ovarian follicles and its role on glucose uptake by mural granulosa cells.

Peralta OA, Bucher D, Angulo C, Castro MA, Ratto MH, Concha I.

Anim Reprod Sci. 2016 Jul;170:157-69. doi: 10.1016/j.anireprosci.2016.04.014. Epub 2016 May 7.


Distinct CCR7 glycosylation pattern shapes receptor signaling and endocytosis to modulate chemotactic responses.

Hauser MA, Kindinger I, Laufer JM, Späte AK, Bucher D, Vanes SL, Krueger WA, Wittmann V, Legler DF.

J Leukoc Biol. 2016 Jun;99(6):993-1007. doi: 10.1189/jlb.2VMA0915-432RR. Epub 2016 Jan 27.


Quantum Yield of Cyclobutane Pyrimidine Dimer Formation Via the Triplet Channel Determined by Photosensitization.

Liu L, Pilles BM, Gontcharov J, Bucher DB, Zinth W.

J Phys Chem B. 2016 Jan 21;120(2):292-8. doi: 10.1021/acs.jpcb.5b08568. Epub 2016 Jan 8.


UV-Induced Charge Transfer States in DNA Promote Sequence Selective Self-Repair.

Bucher DB, Kufner CL, Schlueter A, Carell T, Zinth W.

J Am Chem Soc. 2016 Jan 13;138(1):186-90. doi: 10.1021/jacs.5b09753. Epub 2015 Dec 21.


Direct Age Determination of a Subtropical Freshwater Crayfish (Redclaw, Cherax quadricarinatus) Using Ossicular Growth Marks.

Leland JC, Bucher DJ, Coughran J.

PLoS One. 2015 Aug 26;10(8):e0134966. doi: 10.1371/journal.pone.0134966. eCollection 2015.


Implementation of an Intensive Care Unit Delirium Protocol: An Interdisciplinary Quality Improvement Project.

Marino J, Bucher D, Beach M, Yegneswaran B, Cooper B.

Dimens Crit Care Nurs. 2015 Sep-Oct;34(5):273-84. doi: 10.1097/DCC.0000000000000130.


Dewar Lesion Formation in Single- and Double-Stranded DNA is Quenched by Neighboring Bases.

Bucher DB, Pilles BM, Carell T, Zinth W.

J Phys Chem B. 2015 Jul 16;119(28):8685-92. doi: 10.1021/acs.jpcb.5b04694. Epub 2015 Jul 2.


Multi-Dimensional Measurement of Antibody-Mediated Heterosubtypic Immunity to Influenza.

Wang J, Hilchey SP, Hyrien O, Huertas N, Perry S, Ramanunninair M, Bucher D, Zand MS.

PLoS One. 2015 Jun 23;10(6):e0129858. doi: 10.1371/journal.pone.0129858. eCollection 2015.


Age and growth of mangrove red snapper Lutjanus argentimaculatus at its cool-water-range limits.

Piddocke TP, Butler GL, Butcher PA, Stewart J, Bucher DJ, Christidis L.

J Fish Biol. 2015 May;86(5):1587-600. doi: 10.1111/jfb.12665.


Neuropeptide receptor transcript expression levels and magnitude of ionic current responses show cell type-specific differences in a small motor circuit.

Garcia VJ, Daur N, Temporal S, Schulz DJ, Bucher D.

J Neurosci. 2015 Apr 29;35(17):6786-800. doi: 10.1523/JNEUROSCI.0171-15.2015.


Membranes serve as allosteric activators of phospholipase A2, enabling it to extract, bind, and hydrolyze phospholipid substrates.

Mouchlis VD, Bucher D, McCammon JA, Dennis EA.

Proc Natl Acad Sci U S A. 2015 Feb 10;112(6):E516-25. doi: 10.1073/pnas.1424651112. Epub 2015 Jan 26.


Development of high yield reassortants for influenza type B viruses and analysis of their gene compositions.

Le J, Orff EJ, Fulvini AA, Huang L, Onodera S, Pokorny BA, Malewicz A, Primakov P, Bucher DJ.

Vaccine. 2015 Feb 11;33(7):879-84. doi: 10.1016/j.vaccine.2014.12.027. Epub 2014 Dec 26.


Identification of charge separated states in thymine single strands.

Pilles BM, Bucher DB, Liu L, Gilch P, Zinth W, Schreier WJ.

Chem Commun (Camb). 2014 Dec 21;50(98):15623-6. doi: 10.1039/c4cc07663j. Epub 2014 Oct 31.


Melatonin signaling controls circadian swimming behavior in marine zooplankton.

Tosches MA, Bucher D, Vopalensky P, Arendt D.

Cell. 2014 Sep 25;159(1):46-57. doi: 10.1016/j.cell.2014.07.042.


Synaptic bouton properties are tuned to best fit the prevailing firing pattern.

Knodel MM, Geiger R, Ge L, Bucher D, Grillo A, Wittum G, Schuster CM, Queisser G.

Front Comput Neurosci. 2014 Sep 9;8:101. doi: 10.3389/fncom.2014.00101. eCollection 2014.


Watson-Crick base pairing controls excited-state decay in natural DNA.

Bucher DB, Schlueter A, Carell T, Zinth W.

Angew Chem Int Ed Engl. 2014 Oct 13;53(42):11366-9. doi: 10.1002/anie.201406286. Epub 2014 Sep 4.


Improved Reweighting of Accelerated Molecular Dynamics Simulations for Free Energy Calculation.

Miao Y, Sinko W, Pierce L, Bucher D, Walker RC, McCammon JA.

J Chem Theory Comput. 2014 Jul 8;10(7):2677-2689. Epub 2014 May 1.


Neuromodulation of neurons and synapses.

Nadim F, Bucher D.

Curr Opin Neurobiol. 2014 Dec;29:48-56. doi: 10.1016/j.conb.2014.05.003. Epub 2014 Jun 5. Review.


Depth and medium-scale spatial processes influence fish assemblage structure of unconsolidated habitats in a subtropical marine park.

Schultz AL, Malcolm HA, Bucher DJ, Linklater M, Smith SD.

PLoS One. 2014 May 13;9(5):e96798. doi: 10.1371/journal.pone.0096798. eCollection 2014.


Dipeptide Aggregation in Aqueous Solution from Fixed Point-Charge Force Fields.

Götz AW, Bucher D, Lindert S, McCammon JA.

J Chem Theory Comput. 2014 Apr 8;10(4):1631-1637. Epub 2014 Mar 4.


Mechanism of the Decay of Thymine Triplets in DNA Single Strands.

Pilles BM, Bucher DB, Liu L, Clivio P, Gilch P, Zinth W, Schreier WJ.

J Phys Chem Lett. 2014 May 1;5(9):1616-22. doi: 10.1021/jz500364g. Epub 2014 Apr 22.


Accelerated Molecular Dynamics Simulations with the AMOEBA Polarizable Force Field on Graphics Processing Units.

Lindert S, Bucher D, Eastman P, Pande V, McCammon JA.

J Chem Theory Comput. 2013 Nov 12;9(11):4684-4691. Epub 2013 Oct 15.


Charge separation and charge delocalization identified in long-living states of photoexcited DNA.

Bucher DB, Pilles BM, Carell T, Zinth W.

Proc Natl Acad Sci U S A. 2014 Mar 25;111(12):4369-74. doi: 10.1073/pnas.1323700111. Epub 2014 Mar 10.


Morphology of influenza B/Lee/40 determined by cryo-electron microscopy.

Katz G, Benkarroum Y, Wei H, Rice WJ, Bucher D, Alimova A, Katz A, Klukowska J, Herman GT, Gottlieb P.

PLoS One. 2014 Feb 6;9(2):e88288. doi: 10.1371/journal.pone.0088288. eCollection 2014.


Fingerprinting DNA oxidation processes: IR characterization of the 5-methyl-2'-deoxycytidine radical cation.

Bucher DB, Pilles BM, Pfaffeneder T, Carell T, Zinth W.

Chemphyschem. 2014 Feb 24;15(3):420-3. doi: 10.1002/cphc.201300954. Epub 2014 Jan 2.


Injection force and dose accuracy of FlexTouch for the delivery of a new basal insulin.

Götzche D, Rasmussen BØ, Pedersen MT, Sparre T, Bucher D, Niemeyer M.

Expert Opin Drug Deliv. 2013 Dec;10(12):1613-9. doi: 10.1517/17425247.2013.863276.


A monoclonal antibody targeting a highly conserved epitope in influenza B neuraminidase provides protection against drug resistant strains.

Doyle TM, Li C, Bucher DJ, Hashem AM, Van Domselaar G, Wang J, Farnsworth A, She YM, Cyr T, He R, Brown EG, Hurt AC, Li X.

Biochem Biophys Res Commun. 2013 Nov 8;441(1):226-9. doi: 10.1016/j.bbrc.2013.10.041. Epub 2013 Oct 16.


SnapShot: Neuromodulation.

Bucher D, Marder E.

Cell. 2013 Oct 10;155(2):482-482.e1. doi: 10.1016/j.cell.2013.09.047. No abstract available.


Insertion of the Ca²⁺-independent phospholipase A₂ into a phospholipid bilayer via coarse-grained and atomistic molecular dynamics simulations.

Bucher D, Hsu YH, Mouchlis VD, Dennis EA, McCammon JA.

PLoS Comput Biol. 2013;9(7):e1003156. doi: 10.1371/journal.pcbi.1003156. Epub 2013 Jul 25.


Granulocyte-macrophage colony stimulating factor (GM-CSF) enhances cumulus cell expansion in bovine oocytes.

Peralta OA, Bucher D, Fernandez A, Berland M, Strobel P, Ramirez A, Ratto MH, Concha I.

Reprod Biol Endocrinol. 2013 Jun 24;11:55. doi: 10.1186/1477-7827-11-55.


Molecular signature of high yield (growth) influenza a virus reassortants prepared as candidate vaccine seeds.

Ramanunninair M, Le J, Onodera S, Fulvini AA, Pokorny BA, Silverman J, Devis R, Arroyo JM, He Y, Boyne A, Bera J, Halpin R, Hine E, Spiro DJ, Bucher D.

PLoS One. 2013 Jun 11;8(6):e65955. doi: 10.1371/journal.pone.0065955. Print 2013.


Fluoroketone inhibition of Ca(2+)-independent phospholipase A2 through binding pocket association defined by hydrogen/deuterium exchange and molecular dynamics.

Hsu YH, Bucher D, Cao J, Li S, Yang SW, Kokotos G, Woods VL Jr, McCammon JA, Dennis EA.

J Am Chem Soc. 2013 Jan 30;135(4):1330-7. doi: 10.1021/ja306490g. Epub 2013 Jan 16. Erratum in: J Am Chem Soc. 2013 Apr 17;135(15):5932.


Effects of reef proximity on the structure of fish assemblages of unconsolidated substrata.

Schultz AL, Malcolm HA, Bucher DJ, Smith SD.

PLoS One. 2012;7(11):e49437. doi: 10.1371/journal.pone.0049437. Epub 2012 Nov 16.


Short-term synaptic plasticity compensates for variability in number of motor neurons at a neuromuscular junction.

Daur N, Bryan AS, Garcia VJ, Bucher D.

J Neurosci. 2012 Nov 7;32(45):16007-17. doi: 10.1523/JNEUROSCI.2584-12.2012.


Measurement of direct photons in Au+Au collisions at √(s(NN))=200 GeV.

Afanasiev S, Aidala C, Ajitanand NN, Akiba Y, Al-Jamel A, Alexander J, Aoki K, Aphecetche L, Armendariz R, Aronson SH, Averbeck R, Awes TC, Azmoun B, Babintsev V, Baldisseri A, Barish KN, Barnes PD, Bassalleck B, Bathe S, Batsouli S, Baublis V, Bauer F, Bazilevsky A, Belikov S, Bennett R, Berdnikov Y, Bjorndal MT, Boissevain JG, Borel H, Boyle K, Brooks ML, Brown DS, Bucher D, Buesching H, Bumazhnov V, Bunce G, Burward-Hoy JM, Butsyk S, Campbell S, Chai JS, Chernichenko S, Chi CY, Chiba J, Chiu M, Choi IJ, Chujo T, Cianciolo V, Cleven CR, Cobigo Y, Cole BA, Comets MP, Connors M, Constantin P, Csanád M, Csörgő T, Dahms T, Das K, David G, Delagrange H, Denisov A, d'Enterria D, Deshpande A, Desmond EJ, Dietzsch O, Dion A, Drachenberg JL, Drapier O, Drees A, Dubey AK, Durum A, Dzhordzhadze V, Efremenko YV, Egdemir J, Enokizono A, En'yo H, Espagnon B, Esumi S, Fields DE, Fleuret F, Fokin SL, Forestier B, Fraenkel Z, Frantz JE, Franz A, Frawley AD, Fukao Y, Fung SY, Gadrat S, Gastineau F, Germain M, Glenn A, Gonin M, Gosset J, Goto Y, Granier de Cassagnac R, Grau N, Greene SV, Grosse Perdekamp M, Gunji T, Gustafsson HÅ, Hachiya T, Hadj Henni A, Haggerty JS, Hagiwara MN, Hamagaki H, Harada H, Hartouni EP, Haruna K, Harvey M, Haslum E, Hasuko K, Hayano R, He X, Heffner M, Hemmick TK, Heuser JM, Hiejima H, Hill JC, Hobbs R, Holmes M, Holzmann W, Homma K, Hong B, Horaguchi T, Hur MG, Ichihara T, Iinuma H, Imai K, Imrek J, Inaba M, Isenhower D, Isenhower L, Ishihara M, Isobe T, Issah M, Isupov A, Jacak BV, Jia J, Jin J, Jinnouchi O, Johnson BM, Joo KS, Jouan D, Kajihara F, Kametani S, Kamihara N, Kaneta M, Kang JH, Kawagishi T, Kazantsev AV, Kelly S, Khanzadeev A, Kim DJ, Kim E, Kim YS, Kinney E, Kiss A, Kistenev E, Kiyomichi A, Klein-Boesing C, Kochenda L, Kochetkov V, Komkov B, Konno M, Kotchetkov D, Kozlov A, Kroon PJ, Kunde GJ, Kurihara N, Kurita K, Kweon MJ, Kwon Y, Kyle GS, Lacey R, Lajoie JG, Lebedev A, Le Bornec Y, Leckey S, Lee DM, Lee MK, Leitch MJ, Leite MA, Li XH, Lim H, Litvinenko A, Liu MX, Maguire CF, Makdisi YI, Malakhov A, Malik MD, Manko VI, Masui H, Matathias F, McCain MC, McGaughey PL, Miake Y, Miller TE, Milov A, Mioduszewski S, Mishra GC, Mitchell JT, Morrison DP, Moss JM, Moukhanova TV, Mukhopadhyay D, Murata J, Nagamiya S, Nagata Y, Nagle JL, Naglis M, Nakamura T, Newby J, Nguyen M, Norman BE, Nyanin AS, Nystrand J, O'Brien E, Ogilvie CA, Ohnishi H, Ojha ID, Okada K, Omiwade OO, Oskarsson A, Otterlund I, Ozawa K, Pak R, Pal D, Palounek AP, Pantuev V, Papavassiliou V, Park J, Park WJ, Pate SF, Pei H, Peng JC, Pereira H, Peresedov V, Peressounko DY, Pinkenburg C, Pisani RP, Purschke ML, Purwar AK, Qu H, Rak J, Ravinovich I, Read KF, Reuter M, Reygers K, Riabov V, Riabov Y, Roche G, Romana A, Rosati M, Rosendahl SS, Rosnet P, Rukoyatkin P, Rykov VL, Ryu SS, Sahlmueller B, Saito N, Sakaguchi T, Sakai S, Samsonov V, Sato HD, Sato S, Sawada S, Semenov V, Seto R, Sharma D, Shea TK, Shein I, Shibata TA, Shigaki K, Shimomura M, Shohjoh T, Shoji K, Sickles A, Silva CL, Silvermyr D, Sim KS, Singh CP, Singh V, Skutnik S, Smith WC, Soldatov A, Soltz RA, Sondheim WE, Sorensen SP, Sourikova IV, Staley F, Stankus PW, Stenlund E, Stepanov M, Ster A, Stoll SP, Sugitate T, Suire C, Sullivan JP, Sziklai J, Tabaru T, Takagi S, Takagui EM, Taketani A, Tanaka KH, Tanaka Y, Tanida K, Tannenbaum MJ, Taranenko A, Tarján P, Thomas TL, Togawa M, Tojo J, Torii H, Towell RS, Tram VN, Tserruya I, Tsuchimoto Y, Tuli SK, Tydesjö H, Tyurin N, Vale C, Valle H, van Hecke HW, Velkovska J, Vértesi R, Vinogradov AA, Vznuzdaev E, Wagner M, Wang XR, Watanabe Y, Wessels J, White SN, Willis N, Winter D, Woody CL, Wysocki M, Xie W, Yanovich A, Yokkaichi S, Young GR, Younus I, Yushmanov IE, Zajc WA, Zaudtke O, Zhang C, Zimányi J, Zolin L; PHENIX Collaboration.

Phys Rev Lett. 2012 Oct 12;109(15):152302. Epub 2012 Oct 9.


Exploring the Photophysical Properties of Molecular Systems Using Excited State Accelerated ab Initio Molecular Dynamics.

Ortiz-Sánchez JM, Bucher D, Pierce LC, Markwick PR, McCammon JA.

J Chem Theory Comput. 2012 Aug 14;8(8):2752-2761. Epub 2012 Jun 28.


Homeostatic plasticity in the nervous system.

Maffei A, Bucher D, Fontanini A.

Neural Plast. 2012;2012:913472. doi: 10.1155/2012/913472. Epub 2012 Jul 11. No abstract available.

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