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Items: 1 to 50 of 384

1.

Predicting protein inter-residue contacts using composite likelihood maximization and deep learning.

Zhang H, Zhang Q, Ju F, Zhu J, Gao Y, Xie Z, Deng M, Sun S, Zheng WM, Bu D.

BMC Bioinformatics. 2019 Oct 29;20(1):537. doi: 10.1186/s12859-019-3051-7.

2.

Endogenous hydrogen sulfide sulfhydrates IKKβ at cysteine 179 to control pulmonary artery endothelial cell inflammation.

Zhang D, Wang X, Chen S, Chen S, Yu W, Liu X, Yang G, Tao Y, Tang X, Bu D, Zhang H, Kong W, Tang C, Huang Y, Du J, Jin H.

Clin Sci (Lond). 2019 Oct 30;133(20):2045-2059. doi: 10.1042/CS20190514.

PMID:
31654061
3.

Symbiotic Nitrogen Fixation in Soil Contaminated with the Veterinary Antibiotics Oxytetracycline and Sulfamethazine.

Ostermann A, Mortimer PE, Huang R, Ma L, Bu D, Xu J.

J Environ Qual. 2019 Jul;48(4):1067-1073. doi: 10.2134/jeq2019.01.0021.

PMID:
31589684
4.

Elucidation of the Relationship between Intrinsic Viscosity and Molecular Weight of Cellulose Dissolved in Tetra-N-Butyl Ammonium Hydroxide/Dimethyl Sulfoxide.

Bu D, Hu X, Yang Z, Yang X, Wei W, Jiang M, Zhou Z, Zaman A.

Polymers (Basel). 2019 Oct 1;11(10). pii: E1605. doi: 10.3390/polym11101605.

5.

Inhibition of hydrogen sulfide synthesis reverses acquired resistance to 5-FU through miR-215-5p-EREG/TYMS axis in colon cancer cells.

Chen S, Yue T, Huang Z, Zhu J, Bu D, Wang X, Pan Y, Liu Y, Wang P.

Cancer Lett. 2019 Dec 1;466:49-60. doi: 10.1016/j.canlet.2019.09.006. Epub 2019 Sep 19.

PMID:
31542354
6.

DIFFUSE: predicting isoform functions from sequences and expression profiles via deep learning.

Chen H, Shaw D, Zeng J, Bu D, Jiang T.

Bioinformatics. 2019 Jul 15;35(14):i284-i294. doi: 10.1093/bioinformatics/btz367.

7.

[Effects of nitrogen and plant growth promoter addition on the growth and competitiveness of Leymus chinensis].

Bu DD, Li A, Wang YL, Wang CH, Huang JH.

Ying Yong Sheng Tai Xue Bao. 2019 Aug;30(8):2667-2674. doi: 10.13287/j.1001-9332.201908.015. Chinese.

PMID:
31418191
8.

Study of the mechanism underlying therapeutic effect of Compound Longmaining on myocardial infarction using a network pharmacology-based approach.

Bu D, Su Z, Zou J, Meng M, Wang C.

Biomed Pharmacother. 2019 Oct;118:109234. doi: 10.1016/j.biopha.2019.109234. Epub 2019 Aug 1.

9.
10.

A Novel Broad Allele-Specific TaqMan Real-Time PCR Method To Detect Triazole-Resistant Strains of Aspergillus fumigatus, Even with a Very Low Percentage of Triazole-Resistant Cells Mixed with Triazole-Susceptible Cells.

Wang Q, Kontoyiannis DP, Li R, Chen W, Bu D, Liu W.

J Clin Microbiol. 2019 Aug 26;57(9). pii: e00604-19. doi: 10.1128/JCM.00604-19. Print 2019 Sep.

PMID:
31315952
11.

Trophic Dilution of Short-Chain Chlorinated Paraffins in a Plant-Plateau Pika-Eagle Food Chain from the Tibetan Plateau.

Li H, Bu D, Fu J, Gao Y, Cong Z, Zhang G, Wang Y, Chen X, Zhang A, Jiang G.

Environ Sci Technol. 2019 Aug 20;53(16):9472-9480. doi: 10.1021/acs.est.9b00858. Epub 2019 Jul 29.

PMID:
31310123
12.

Egr-1 transcriptionally activates protein phosphatase PTP1B to facilitate hyperinsulinemia-induced insulin resistance in the liver in type 2 diabetes.

Wu J, Tao W, Bu D, Zhao Y, Zhang T, Chong D, Xue B, Xing Z, Li C.

FEBS Lett. 2019 Nov;593(21):3054-3063. doi: 10.1002/1873-3468.13537. Epub 2019 Aug 2.

PMID:
31309546
13.

Heat stress negatively affects the transcriptome related to overall metabolism and milk protein synthesis in mammary tissue of midlactating dairy cows.

Gao ST, Ma L, Zhou Z, Zhou ZK, Baumgard LH, Jiang D, Bionaz M, Bu DP.

Physiol Genomics. 2019 Aug 1;51(8):400-409. doi: 10.1152/physiolgenomics.00039.2019. Epub 2019 Jul 12.

PMID:
31298615
14.

The Transcriptome Landscape of Walnut Interspecies Hybrid (Juglans hindsii × Juglans regia) and Regulation of Cambial Activity in Relation to Grafting.

Ma Q, Bu D, Zhang J, Wu Y, Pei D.

Front Genet. 2019 Jun 21;10:577. doi: 10.3389/fgene.2019.00577. eCollection 2019.

15.

Rubber seed oil and flaxseed oil supplementation alter digestion, ruminal fermentation and rumen fatty acid profile of dairy cows.

Pi Y, Ma L, Pierce KM, Wang HR, Xu JC, Bu DP.

Animal. 2019 Jul 4:1-10. doi: 10.1017/S175173111900137X. [Epub ahead of print]

PMID:
31270003
16.

Effects of close-up dietary energy level and supplementing rumen-protected lysine on energy metabolites and milk production in transition cows.

Girma DD, Ma L, Wang F, Jiang QR, Callaway TR, Drackley JK, Bu DP.

J Dairy Sci. 2019 Aug;102(8):7059-7072. doi: 10.3168/jds.2018-15962. Epub 2019 Jun 6.

PMID:
31178198
17.

CircRNAwrap - a flexible pipeline for circRNA identification, transcript prediction, and abundance estimation.

Li L, Bu D, Zhao Y.

FEBS Lett. 2019 Jun;593(11):1179-1189. doi: 10.1002/1873-3468.13423. Epub 2019 May 15.

PMID:
31055837
18.

De novo glycan structural identification from mass spectra using tree merging strategy.

Ju F, Zhang J, Bu D, Li Y, Zhou J, Wang H, Wang Y, Huang C, Sun S.

Comput Biol Chem. 2019 Jun;80:217-224. doi: 10.1016/j.compbiolchem.2019.03.015. Epub 2019 Mar 30.

PMID:
30999248
19.

Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling.

Wang C, Wei Y, Zhang H, Kong L, Sun S, Zheng WM, Bu D.

BMC Bioinformatics. 2019 Mar 29;20(Suppl 3):135. doi: 10.1186/s12859-019-2652-5.

20.

Human endotrophin as a driver of malignant tumor growth.

Bu D, Crewe C, Kusminski CM, Gordillo R, Ghaben AL, Kim M, Park J, Deng H, Xiong W, Liu XZ, Lønning PE, Halberg N, Rios A, Chang Y, Gonzalez A, Zhang N, An Z, Scherer PE.

JCI Insight. 2019 Mar 21;5. pii: 125094. doi: 10.1172/jci.insight.125094.

21.

Rubber seed oil and flaxseed oil supplementation on serum fatty acid profile, oxidation stability of serum and milk, and immune function of dairy cows

Pi Y, Ma L, Wang H, Wang J, Xu J, Bu D.

Asian-Australas J Anim Sci. 2019 Jan 4;32(9):1363-1372. doi: 10.5713/ajas.18.0573. Print 2019 Sep.

22.

Two Chinese Xia-Gibbs syndrome patients with partial growth hormone deficiency.

Cheng X, Tang F, Hu X, Li H, Li M, Fu Y, Yan L, Li Z, Gou P, Su N, Gong C, He W, Xiang R, Bu D, Shen Y.

Mol Genet Genomic Med. 2019 Apr;7(4):e00596. doi: 10.1002/mgg3.596. Epub 2019 Feb 6.

23.

Decreased Expression of Cystathionine β-Synthase Exacerbates Intestinal Barrier Injury in Ulcerative Colitis.

Chen S, Zuo S, Zhu J, Yue T, Bu D, Wang X, Wang P, Pan Y, Liu Y.

J Crohns Colitis. 2019 Aug 14;13(8):1067-1080. doi: 10.1093/ecco-jcc/jjz027.

PMID:
30722010
24.

Best-first search guided multistage mass spectrometry-based glycan identification.

Wang Y, Bu D, Huang C, Wang H, Zhou J, Dong J, Pan W, Zhang J, Zhang Q, Li Y, Sun S.

Bioinformatics. 2019 Sep 1;35(17):2991-2997. doi: 10.1093/bioinformatics/btz056.

PMID:
30689704
25.

Heat stress induces proteomic changes in the liver and mammary tissue of dairy cows independent of feed intake: An iTRAQ study.

Ma L, Yang Y, Zhao X, Wang F, Gao S, Bu D.

PLoS One. 2019 Jan 9;14(1):e0209182. doi: 10.1371/journal.pone.0209182. eCollection 2019.

26.

Gain-of-Function Mutations in TRPM4 Activation Gate Cause Progressive Symmetric Erythrokeratodermia.

Wang H, Xu Z, Lee BH, Vu S, Hu L, Lee M, Bu D, Cao X, Hwang S, Yang Y, Zheng J, Lin Z.

J Invest Dermatol. 2019 May;139(5):1089-1097. doi: 10.1016/j.jid.2018.10.044. Epub 2018 Dec 5.

PMID:
30528822
27.

Toward Automated Identification of Glycan Branching Patterns Using Multistage Mass Spectrometry with Intelligent Precursor Selection.

Sun S, Huang C, Wang Y, Liu Y, Zhang J, Zhou J, Gao F, Yang F, Chen R, Mulloy B, Chai W, Li Y, Bu D.

Anal Chem. 2018 Dec 18;90(24):14412-14422. doi: 10.1021/acs.analchem.8b03967. Epub 2018 Nov 30.

PMID:
30444352
28.

Resilience of human gut microbial communities for the long stay with multiple dietary shifts.

Liu H, Han M, Li SC, Tan G, Sun S, Hu Z, Yang P, Wang R, Liu Y, Chen F, Peng J, Peng H, Song H, Xia Y, Chu L, Zhou Q, Guan F, Wu J, Bu D, Ning K.

Gut. 2019 Dec;68(12):2254-2255. doi: 10.1136/gutjnl-2018-317298. Epub 2018 Nov 12. No abstract available.

29.

SymMap: an integrative database of traditional Chinese medicine enhanced by symptom mapping.

Wu Y, Zhang F, Yang K, Fang S, Bu D, Li H, Sun L, Hu H, Gao K, Wang W, Zhou X, Zhao Y, Chen J.

Nucleic Acids Res. 2019 Jan 8;47(D1):D1110-D1117. doi: 10.1093/nar/gky1021.

30.

Effects of source on bioavailability of selenium, antioxidant status, and performance in lactating dairy cows during oxidative stress-inducing conditions.

Sun LL, Gao ST, Wang K, Xu JC, Sanz-Fernandez MV, Baumgard LH, Bu DP.

J Dairy Sci. 2019 Jan;102(1):311-319. doi: 10.3168/jds.2018-14974. Epub 2018 Oct 19.

PMID:
30343914
31.

iDASH secure genome analysis competition 2017.

Wang X, Tang H, Wang S, Jiang X, Wang W, Bu D, Wang L, Jiang Y, Wang C.

BMC Med Genomics. 2018 Oct 11;11(Suppl 4):85. doi: 10.1186/s12920-018-0396-0. No abstract available.

32.

Targeted high-throughput sequencing technique for the molecular diagnosis of primary immunodeficiency disorders.

Chi ZH, Wei W, Bu DF, Li HH, Ding F, Zhu P.

Medicine (Baltimore). 2018 Oct;97(40):e12695. doi: 10.1097/MD.0000000000012695.

33.

LncRNA DSCAM-AS1 acts as a sponge of miR-137 to enhance Tamoxifen resistance in breast cancer.

Ma Y, Bu D, Long J, Chai W, Dong J.

J Cell Physiol. 2019 Mar;234(3):2880-2894. doi: 10.1002/jcp.27105. Epub 2018 Sep 10.

PMID:
30203615
34.

Protein threading using residue co-variation and deep learning.

Zhu J, Wang S, Bu D, Xu J.

Bioinformatics. 2018 Jul 1;34(13):i263-i273. doi: 10.1093/bioinformatics/bty278.

35.

RNA-seq based transcriptome analysis of the protective effect of compound longmaining decoction on acute myocardial infarction.

Wang C, Bai X, Liu S, Wang J, Su Z, Zhang W, Bu D, Yan Y, Song X.

J Pharm Biomed Anal. 2018 Sep 5;158:339-345. doi: 10.1016/j.jpba.2018.06.016. Epub 2018 Jun 18.

PMID:
29933226
36.

IP3R-Grp75-VDAC1-MCU calcium regulation axis antagonists protect podocytes from apoptosis and decrease proteinuria in an Adriamycin nephropathy rat model.

Xu H, Guan N, Ren YL, Wei QJ, Tao YH, Yang GS, Liu XY, Bu DF, Zhang Y, Zhu SN.

BMC Nephrol. 2018 Jun 15;19(1):140. doi: 10.1186/s12882-018-0940-3.

37.

Pre-clinical validation of B cell maturation antigen (BCMA) as a target for T cell immunotherapy of multiple myeloma.

Bu DX, Singh R, Choi EE, Ruella M, Nunez-Cruz S, Mansfield KG, Bennett P, Barton N, Wu Q, Zhang J, Wang Y, Wei L, Cogan S, Ezell T, Joshi S, Latimer KJ, Granda B, Tschantz WR, Young RM, Huet HA, Richardson CJ, Milone MC.

Oncotarget. 2018 May 25;9(40):25764-25780. doi: 10.18632/oncotarget.25359. eCollection 2018 May 25.

38.

Real-time Protection of Genomic Data Sharing in Beacon Services.

Bu D, Wang X, Tang H.

AMIA Jt Summits Transl Sci Proc. 2018 May 18;2017:45-54. eCollection 2018.

39.

Understanding the charge transport properties of redox active metal-organic conjugated wires.

Bu D, Xiong Y, Tan YN, Meng M, Low PJ, Kuang DB, Liu CY.

Chem Sci. 2018 Feb 19;9(14):3438-3450. doi: 10.1039/c7sc04727d. eCollection 2018 Apr 14.

40.

Newly emerged porcine enteric alphacoronavirus in southern China: Identification, origin and evolutionary history analysis.

Fu X, Fang B, Liu Y, Cai M, Jun J, Ma J, Bu D, Wang L, Zhou P, Wang H, Zhang G.

Infect Genet Evol. 2018 Aug;62:179-187. doi: 10.1016/j.meegid.2018.04.031. Epub 2018 Apr 25.

PMID:
29704627
41.

Control of the rectifying effect and direction by redox asymmetry in Rh2-based molecular diodes.

Bu D, Xiong Y, Tan YN, Meng M, Liu CY.

Chem Commun (Camb). 2018 Apr 5;54(29):3632-3635. doi: 10.1039/c8cc02062k.

PMID:
29577160
42.

Biological data processing based on bio-processor unit (BPU), a new concept for next generation computational biology.

Liu D, Bu D, Shi T, Quan J, Wang D, Shi Y, Bo XC, Han W.

Sci China Life Sci. 2018 May;61(5):597-598. doi: 10.1007/s11427-018-9278-3. Epub 2018 Mar 12. No abstract available.

PMID:
29541989
43.

Molecular evolution of H1N1 swine influenza in Guangdong, China, 2016-2017.

Cai M, Huang J, Bu D, Yu Z, Fu X, Ji C, Zhou P, Zhang G.

Infect Genet Evol. 2018 Jun;60:103-108. doi: 10.1016/j.meegid.2018.02.029. Epub 2018 Mar 21.

PMID:
29477550
44.

Adamts18 deficiency increases arterial thrombus formation associated with vascular defects in mice.

Dang S, Bu D, Lu T, Wang Z, Liu J, Zhang W.

Biochem Biophys Res Commun. 2018 Feb 19;496(4):1362-1368. doi: 10.1016/j.bbrc.2018.02.032. Epub 2018 Feb 6.

PMID:
29421655
45.

A community effort to protect genomic data sharing, collaboration and outsourcing.

Wang S, Jiang X, Tang H, Wang X, Bu D, Carey K, Dyke SO, Fox D, Jiang C, Lauter K, Malin B, Sofia H, Telenti A, Wang L, Wang W, Ohno-Machado L.

NPJ Genom Med. 2017 Oct 27;2:33. doi: 10.1038/s41525-017-0036-1. eCollection 2017. Review.

46.

Insights into the epidemic characteristics and evolutionary history of the novel porcine circovirus type 3 in southern China.

Fu X, Fang B, Ma J, Liu Y, Bu D, Zhou P, Wang H, Jia K, Zhang G.

Transbound Emerg Dis. 2018 Apr;65(2):e296-e303. doi: 10.1111/tbed.12752. Epub 2017 Nov 26.

PMID:
29178283
47.

Decrease of galectin-3 in keratinocytes: A potential diagnostic marker and a critical contributor to the pathogenesis of psoriasis.

Shi ZR, Tan GZ, Cao CX, Han YF, Meng Z, Man XY, Jiang ZX, Zhang YP, Dang NN, Wei KH, Bu DF, Liu FT, Wang L.

J Autoimmun. 2018 May;89:30-40. doi: 10.1016/j.jaut.2017.11.002. Epub 2017 Nov 20.

PMID:
29167025
48.

Effects of low dietary cation-anion difference induced by ruminal ammonium chloride infusion on performance, serum, and urine metabolites of lactating dairy cows.

Wang K, Nan X, Zhao P, Liu W, Drackley JK, Liu S, Zhang K, Bu D.

Asian-Australas J Anim Sci. 2018 May;31(5):677-685. doi: 10.5713/ajas.17.0530. Epub 2017 Nov 3.

49.

Hydroxy-selenomethionine: A novel organic selenium source that improves antioxidant status and selenium concentrations in milk and plasma of mid-lactation dairy cows.

Sun P, Wang J, Liu W, Bu DP, Liu SJ, Zhang KZ.

J Dairy Sci. 2017 Dec;100(12):9602-9610. doi: 10.3168/jds.2017-12610. Epub 2017 Oct 4.

50.

Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts.

Zhu J, Zhang H, Li SC, Wang C, Kong L, Sun S, Zheng WM, Bu D.

Bioinformatics. 2017 Dec 1;33(23):3749-3757. doi: 10.1093/bioinformatics/btx514.

PMID:
28961795

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