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Items: 1 to 50 of 57

1.

Nucleotide resolution sequencing of N4-acetylcytidine in RNA.

Thomas JM, Bryson KM, Meier JL.

Methods Enzymol. 2019;621:31-51. doi: 10.1016/bs.mie.2019.02.022. Epub 2019 Mar 12.

PMID:
31128786
2.

Biclustering Analysis of Co-regulation Patterns in Nuclear-Encoded Mitochondrial Genes and Metabolic Pathways.

Bentham RB, Bryson K, Szabadkai G.

Methods Mol Biol. 2019;1928:469-478. doi: 10.1007/978-1-4939-9027-6_24.

PMID:
30725470
3.

Dose-dependent differential resistance of inbred chicken lines to avian pathogenic Escherichia coli challenge.

Alber A, Costa T, Chintoan-Uta C, Bryson KJ, Kaiser P, Stevens MP, Vervelde L.

Avian Pathol. 2019 Apr;48(2):157-167. doi: 10.1080/03079457.2018.1562154. Epub 2019 Jan 14.

PMID:
30570345
4.

Visualisation and characterisation of mononuclear phagocytes in the chicken respiratory tract using CSF1R-transgenic chickens.

Sutton K, Costa T, Alber A, Bryson K, Borowska D, Balic A, Kaiser P, Stevens M, Vervelde L.

Vet Res. 2018 Oct 10;49(1):104. doi: 10.1186/s13567-018-0598-7.

5.

A pilot exploratory investigation on pregnant women's views regarding STan fetal monitoring technology.

Bryson K, Wilkinson C, Kuah S, Matthews G, Turnbull D.

BMC Pregnancy Childbirth. 2017 Dec 29;17(1):446. doi: 10.1186/s12884-017-1598-8.

6.

Repetitive Negative Thinking as a Transdiagnostic Predictor of Depression and Anxiety Symptoms in Adolescents.

McEvoy PM, Salmon K, Hyett MP, Jose PE, Gutenbrunner C, Bryson K, Dewhirst M.

Assessment. 2019 Mar;26(2):324-335. doi: 10.1177/1073191117693923. Epub 2017 Feb 16.

PMID:
29214855
7.

MCbiclust: a novel algorithm to discover large-scale functionally related gene sets from massive transcriptomics data collections.

Bentham RB, Bryson K, Szabadkai G.

Nucleic Acids Res. 2017 Sep 6;45(15):8712-8730. doi: 10.1093/nar/gkx590.

8.

Host-Microbe Co-metabolism Dictates Cancer Drug Efficacy in C. elegans.

Scott TA, Quintaneiro LM, Norvaisas P, Lui PP, Wilson MP, Leung KY, Herrera-Dominguez L, Sudiwala S, Pessia A, Clayton PT, Bryson K, Velagapudi V, Mills PB, Typas A, Greene NDE, Cabreiro F.

Cell. 2017 Apr 20;169(3):442-456.e18. doi: 10.1016/j.cell.2017.03.040.

9.

Inhibiting the NLRP3 inflammasome with MCC950 promotes non-phlogistic clearance of amyloid-β and cognitive function in APP/PS1 mice.

Dempsey C, Rubio Araiz A, Bryson KJ, Finucane O, Larkin C, Mills EL, Robertson AAB, Cooper MA, O'Neill LAJ, Lynch MA.

Brain Behav Immun. 2017 Mar;61:306-316. doi: 10.1016/j.bbi.2016.12.014. Epub 2016 Dec 18.

PMID:
28003153
10.

Highly polygenic architecture of antidepressant treatment response: Comparative analysis of SSRI and NRI treatment in an animal model of depression.

Malki K, Tosto MG, Mouriño-Talín H, Rodríguez-Lorenzo S, Pain O, Jumhaboy I, Liu T, Parpas P, Newman S, Malykh A, Carboni L, Uher R, McGuffin P, Schalkwyk LC, Bryson K, Herbster M.

Am J Med Genet B Neuropsychiatr Genet. 2017 Apr;174(3):235-250. doi: 10.1002/ajmg.b.32494. Epub 2016 Oct 1.

11.

An expanded evaluation of protein function prediction methods shows an improvement in accuracy.

Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SM, Martelli PL, Profiti G, Casadio R, Cao R, Zhong Z, Cheng J, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Törönen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Bkc D, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang H, Paccanaro A, Gillis J, Sedeño-Cortés AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong Q, Ning W, Zhou Y, Tian W, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SC, Del Pozo A, Fernández JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk AD, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-E-Silva DC, Vencio RZ, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJ, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P.

Genome Biol. 2016 Sep 7;17(1):184. doi: 10.1186/s13059-016-1037-6.

12.

Rapid identification of bovine MHCI haplotypes in genetically divergent cattle populations using next-generation sequencing.

Vasoya D, Law A, Motta P, Yu M, Muwonge A, Cook E, Li X, Bryson K, MacCallam A, Sitt T, Toye P, Bronsvoort B, Watson M, Morrison WI, Connelley T.

Immunogenetics. 2016 Nov;68(10):765-781. Epub 2016 Aug 11.

13.

Epigenetic differences in monozygotic twins discordant for major depressive disorder.

Malki K, Koritskaya E, Harris F, Bryson K, Herbster M, Tosto MG.

Transl Psychiatry. 2016 Jun 14;6(6):e839. doi: 10.1038/tp.2016.101.

14.

Linking T cells to Alzheimer's disease: from neurodegeneration to neurorepair.

Bryson KJ, Lynch MA.

Curr Opin Pharmacol. 2016 Feb;26:67-73. doi: 10.1016/j.coph.2015.10.003. Epub 2015 Oct 27. Review.

PMID:
26516722
15.

Wide bicontinuous compositional windows from co-networks made with telechelic macromonomers.

Walker CN, Bryson KC, Hayward RC, Tew GN.

ACS Nano. 2014 Dec 23;8(12):12376-85. doi: 10.1021/nn505026a. Epub 2014 Dec 9.

PMID:
25415537
16.

Does vitamin D protect against respiratory viral infections?

Bryson KJ, Nash AA, Norval M.

Epidemiol Infect. 2014 Sep;142(9):1789-801. doi: 10.1017/S0950268814000193. Review.

PMID:
25030183
17.

Guidelines for conducting a spiritual assessment.

Bryson K.

Palliat Support Care. 2015 Feb;13(1):91-8. doi: 10.1017/S147895151300045X. Epub 2013 Jun 17. No abstract available.

PMID:
23768995
18.

Scalable web services for the PSIPRED Protein Analysis Workbench.

Buchan DW, Minneci F, Nugent TC, Bryson K, Jones DT.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W349-57. doi: 10.1093/nar/gkt381. Epub 2013 Jun 8.

19.

Protein function prediction by massive integration of evolutionary analyses and multiple data sources.

Cozzetto D, Buchan DW, Bryson K, Jones DT.

BMC Bioinformatics. 2013;14 Suppl 3:S1. doi: 10.1186/1471-2105-14-S3-S1. Epub 2013 Feb 28.

20.

A large-scale evaluation of computational protein function prediction.

Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, Pandey G, Yunes JM, Talwalkar AS, Repo S, Souza ML, Piovesan D, Casadio R, Wang Z, Cheng J, Fang H, Gough J, Koskinen P, Törönen P, Nokso-Koivisto J, Holm L, Cozzetto D, Buchan DW, Bryson K, Jones DT, Limaye B, Inamdar H, Datta A, Manjari SK, Joshi R, Chitale M, Kihara D, Lisewski AM, Erdin S, Venner E, Lichtarge O, Rentzsch R, Yang H, Romero AE, Bhat P, Paccanaro A, Hamp T, Kaßner R, Seemayer S, Vicedo E, Schaefer C, Achten D, Auer F, Boehm A, Braun T, Hecht M, Heron M, Hönigschmid P, Hopf TA, Kaufmann S, Kiening M, Krompass D, Landerer C, Mahlich Y, Roos M, Björne J, Salakoski T, Wong A, Shatkay H, Gatzmann F, Sommer I, Wass MN, Sternberg MJ, Škunca N, Supek F, Bošnjak M, Panov P, Džeroski S, Šmuc T, Kourmpetis YA, van Dijk AD, ter Braak CJ, Zhou Y, Gong Q, Dong X, Tian W, Falda M, Fontana P, Lavezzo E, Di Camillo B, Toppo S, Lan L, Djuric N, Guo Y, Vucetic S, Bairoch A, Linial M, Babbitt PC, Brenner SE, Orengo C, Rost B, Mooney SD, Friedberg I.

Nat Methods. 2013 Mar;10(3):221-7. doi: 10.1038/nmeth.2340. Epub 2013 Jan 27.

21.

SwiftLink: parallel MCMC linkage analysis using multicore CPU and GPU.

Medlar A, Głowacka D, Stanescu H, Bryson K, Kleta R.

Bioinformatics. 2013 Feb 15;29(4):413-9. doi: 10.1093/bioinformatics/bts704. Epub 2012 Dec 13.

PMID:
23239673
22.

The O/OREOS mission: first science data from the space environment viability of organics (SEVO) payload.

Mattioda A, Cook A, Ehrenfreund P, Quinn R, Ricco AJ, Squires D, Bramall N, Bryson K, Chittenden J, Minelli G, Agasid E, Allamandola L, Beasley C, Burton R, Defouw G, Diaz-Aguado M, Fonda M, Friedericks C, Kitts C, Landis D, McIntyre M, Neumann M, Rasay M, Ricks R, Salama F, Santos O, Schooley A, Yost B, Young A.

Astrobiology. 2012 Sep;12(9):841-53. doi: 10.1089/ast.2012.0861.

PMID:
22984872
23.

Sequetyping: serotyping Streptococcus pneumoniae by a single PCR sequencing strategy.

Leung MH, Bryson K, Freystatter K, Pichon B, Edwards G, Charalambous BM, Gillespie SH.

J Clin Microbiol. 2012 Jul;50(7):2419-27. doi: 10.1128/JCM.06384-11. Epub 2012 May 2.

24.

A novel method to allow noninvasive, longitudinal imaging of the murine immune system in vivo.

Gibson VB, Benson RA, Bryson KJ, McInnes IB, Rush CM, Grassia G, Maffia P, Jenkinson EJ, White AJ, Anderson G, Brewer JM, Garside P.

Blood. 2012 Mar 15;119(11):2545-51. doi: 10.1182/blood-2011-09-378356. Epub 2012 Jan 23.

25.

BALB/c mice deficient in CD4 T cell IL-4Rα expression control Leishmania mexicana Load although female but not male mice develop a healer phenotype.

Bryson KJ, Millington OR, Mokgethi T, McGachy HA, Brombacher F, Alexander J.

PLoS Negl Trop Dis. 2011 Jan 4;5(1):e930. doi: 10.1371/journal.pntd.0000930.

26.

Detecting gene duplications in the human lineage.

Itan Y, Bryson K, Thomas MG.

Ann Hum Genet. 2010 Nov;74(6):555-65. doi: 10.1111/j.1469-1809.2010.00609.x.

27.

Protein annotation and modelling servers at University College London.

Buchan DW, Ward SM, Lobley AE, Nugent TC, Bryson K, Jones DT.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W563-8. doi: 10.1093/nar/gkq427. Epub 2010 May 27.

28.

Characterization of CD4+ T-cell-dendritic cell interactions during secondary antigen exposure in tolerance and priming.

Rush CM, Millington OR, Hutchison S, Bryson K, Brewer JM, Garside P.

Immunology. 2009 Dec;128(4):463-71. doi: 10.1111/j.1365-2567.2009.03124.x.

29.

Overexpression of the natural inhibitor of cysteine peptidases in Leishmania mexicana leads to reduced virulence and a Th1 response.

Bryson K, Besteiro S, McGachy HA, Coombs GH, Mottram JC, Alexander J.

Infect Immun. 2009 Jul;77(7):2971-8. doi: 10.1128/IAI.00558-08. Epub 2009 May 11.

30.

A meta-analysis of microarray gene expression in mouse stem cells: redefining stemness.

Edwards YJ, Bryson K, Jones DT.

PLoS One. 2008 Jul 16;3(7):e2712. doi: 10.1371/journal.pone.0002712.

31.

Interleukin-18 enhances a Th2 biased response and susceptibility to Leishmania mexicana in BALB/c mice.

Bryson KJ, Wei XQ, Alexander J.

Microbes Infect. 2008 Jun;10(7):834-9. doi: 10.1016/j.micinf.2008.03.009. Epub 2008 Apr 8.

PMID:
18538609
32.

Computer-assisted protein domain boundary prediction using the DomPred server.

Bryson K, Cozzetto D, Jones DT.

Curr Protein Pept Sci. 2007 Apr;8(2):181-8. Review.

PMID:
17430199
33.

AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system.

Bryson K, Loux V, Bossy R, Nicolas P, Chaillou S, van de Guchte M, Penaud S, Maguin E, Hoebeke M, Bessières P, Gibrat JF.

Nucleic Acids Res. 2006 Jul 19;34(12):3533-45. Print 2006.

34.

High throughput profile-profile based fold recognition for the entire human proteome.

McGuffin LJ, Smith RT, Bryson K, Sørensen SA, Jones DT.

BMC Bioinformatics. 2006 Jun 7;7:288.

35.

The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution.

van de Guchte M, Penaud S, Grimaldi C, Barbe V, Bryson K, Nicolas P, Robert C, Oztas S, Mangenot S, Couloux A, Loux V, Dervyn R, Bossy R, Bolotin A, Batto JM, Walunas T, Gibrat JF, Bessières P, Weissenbach J, Ehrlich SD, Maguin E.

Proc Natl Acad Sci U S A. 2006 Jun 13;103(24):9274-9. Epub 2006 Jun 5.

36.

Spirituality, meaning, and transcendence.

Bryson KA.

Palliat Support Care. 2004 Sep;2(3):321-8.

PMID:
16594418
37.

Prediction of novel and analogous folds using fragment assembly and fold recognition.

Jones DT, Bryson K, Coleman A, McGuffin LJ, Sadowski MI, Sodhi JS, Ward JJ.

Proteins. 2005;61 Suppl 7:143-51.

PMID:
16187356
38.

Protein structure prediction servers at University College London.

Bryson K, McGuffin LJ, Marsden RL, Ward JJ, Sodhi JS, Jones DT.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W36-8.

39.

T helper (h)1/Th2 and Leishmania: paradox rather than paradigm.

Alexander J, Bryson K.

Immunol Lett. 2005 Jun 15;99(1):17-23. Epub 2005 Feb 17. Review.

PMID:
15894106
40.

Predicting metal-binding site residues in low-resolution structural models.

Sodhi JS, Bryson K, McGuffin LJ, Ward JJ, Wernisch L, Jones DT.

J Mol Biol. 2004 Sep 3;342(1):307-20.

PMID:
15313626
41.

Finance. Put your house in order.

Revie C, Bryson K.

Health Serv J. 2004 Apr 1;114(5899):35. No abstract available.

PMID:
15077527
42.

The DISOPRED server for the prediction of protein disorder.

Ward JJ, McGuffin LJ, Bryson K, Buxton BF, Jones DT.

Bioinformatics. 2004 Sep 1;20(13):2138-9. Epub 2004 Mar 25.

PMID:
15044227
43.

The Genomic Threading Database: a comprehensive resource for structural annotations of the genomes from key organisms.

McGuffin LJ, Street SA, Bryson K, Sørensen SA, Jones DT.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D196-9.

44.

Public-private partnerships. Public pain, private gain.

Bryson K, Williams E, Bell C.

Health Serv J. 2001 Sep 6;111(5771):24-6.

PMID:
11569453
45.

What are the baselines for protein fold recognition?

McGuffin LJ, Bryson K, Jones DT.

Bioinformatics. 2001 Jan;17(1):63-72.

PMID:
11222263
46.
47.

The PSIPRED protein structure prediction server.

McGuffin LJ, Bryson K, Jones DT.

Bioinformatics. 2000 Apr;16(4):404-5.

PMID:
10869041
48.

CAFASP-1: critical assessment of fully automated structure prediction methods.

Fischer D, Barret C, Bryson K, Elofsson A, Godzik A, Jones D, Karplus KJ, Kelley LA, MacCallum RM, Pawowski K, Rost B, Rychlewski L, Sternberg M.

Proteins. 1999;Suppl 3:209-17.

PMID:
10526371
49.
50.

Role of cellular thiol status in tocopheryl hemisuccinate cytoprotection against ethyl methanesulfonate-induced toxicity.

Fariss MW, Bryson KF, Tirmenstein MA.

Biochem Pharmacol. 1997 Mar 7;53(5):651-61.

PMID:
9113084

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