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Items: 44

1.

Corrigendum to "Starved Escherichia coli preserve reducing power under nitric oxide stress" Biochemical and Biophysical Research Communications, Volume 476, Issue 115, July 2016, Pages 29-34.

Gowers GF, Robinson JL, Brynildsen MP.

Biochem Biophys Res Commun. 2018 Sep 14. pii: S0006-291X(18)31884-9. doi: 10.1016/j.bbrc.2018.08.184. [Epub ahead of print] No abstract available.

PMID:
30224055
2.

Timing of DNA damage responses impacts persistence to fluoroquinolones.

Mok WWK, Brynildsen MP.

Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):E6301-E6309. doi: 10.1073/pnas.1804218115. Epub 2018 Jun 18.

PMID:
29915065
3.

Tackling host-circuit give and take.

Aedo SJ, Gelderman G, Brynildsen MP.

Nat Microbiol. 2017 Dec;2(12):1584-1585. doi: 10.1038/s41564-017-0058-6. No abstract available.

PMID:
29176699
4.

An integrated network analysis identifies how ArcAB enables metabolic oscillations in the nitric oxide detoxification network of Escherichia coli.

Sacco SA, Adolfsen KJ, Brynildsen MP.

Biotechnol J. 2017 Aug;12(8). doi: 10.1002/biot.201600570. Epub 2017 May 24.

PMID:
28449226
5.

Biased inheritance protects older bacteria from harm.

Barrett TC, Mok WWK, Brynildsen MP.

Science. 2017 Apr 21;356(6335):247-248. doi: 10.1126/science.aan0348. Epub 2017 Apr 20. No abstract available.

PMID:
28428383
6.

An integrated network analysis reveals that nitric oxide reductase prevents metabolic cycling of nitric oxide by Pseudomonas aeruginosa.

Robinson JL, Jaslove JM, Murawski AM, Fazen CH, Brynildsen MP.

Metab Eng. 2017 May;41:67-81. doi: 10.1016/j.ymben.2017.03.006. Epub 2017 Mar 29.

PMID:
28363762
7.

An Orphan Riboswitch Unveils Guanidine Regulation in Bacteria.

Mok WWK, Brynildsen MP.

Mol Cell. 2017 Jan 19;65(2):205-206. doi: 10.1016/j.molcel.2017.01.001.

8.

Starved Escherichia coli preserve reducing power under nitric oxide stress.

Gowers GO, Robinson JL, Brynildsen MP.

Biochem Biophys Res Commun. 2016 Jul 15;476(1):29-34. doi: 10.1016/j.bbrc.2016.05.082. Epub 2016 May 18. Erratum in: Biochem Biophys Res Commun. 2018 Sep 14;:.

PMID:
27207837
9.
10.

Quantifying Current Events Identifies a Novel Endurance Regulator.

Henry TC, Brynildsen MP.

Trends Microbiol. 2016 May;24(5):324-326. doi: 10.1016/j.tim.2016.02.014. Epub 2016 Mar 4.

11.

Discovery and dissection of metabolic oscillations in the microaerobic nitric oxide response network of Escherichia coli.

Robinson JL, Brynildsen MP.

Proc Natl Acad Sci U S A. 2016 Mar 22;113(12):E1757-66. doi: 10.1073/pnas.1521354113. Epub 2016 Mar 7.

12.

Erratum: Inhibition of stationary phase respiration impairs persister formation in E. coli.

Orman MA, Brynildsen MP.

Nat Commun. 2016 Feb 17;7:10756. doi: 10.1038/ncomms10756. No abstract available.

13.

Persister formation in Escherichia coli can be inhibited by treatment with nitric oxide.

Orman MA, Brynildsen MP.

Free Radic Biol Med. 2016 Apr;93:145-54. doi: 10.1016/j.freeradbiomed.2016.02.003. Epub 2016 Feb 2.

14.

Construction and Experimental Validation of a Quantitative Kinetic Model of Nitric Oxide Stress in Enterohemorrhagic Escherichia coli O157:H7.

Robinson JL, Brynildsen MP.

Bioengineering (Basel). 2016 Feb 6;3(1). pii: E9. doi: 10.3390/bioengineering3010009.

15.

Non-Monotonic Survival of Staphylococcus aureus with Respect to Ciprofloxacin Concentration Arises from Prophage-Dependent Killing of Persisters.

Sandvik EL, Fazen CH, Henry TC, Mok WW, Brynildsen MP.

Pharmaceuticals (Basel). 2015 Nov 17;8(4):778-92. doi: 10.3390/ph8040778.

16.

RNA Futile Cycling in Model Persisters Derived from MazF Accumulation.

Mok WW, Park JO, Rabinowitz JD, Brynildsen MP.

MBio. 2015 Nov 17;6(6):e01588-15. doi: 10.1128/mBio.01588-15.

17.

A Kinetic Platform to Determine the Fate of Hydrogen Peroxide in Escherichia coli.

Adolfsen KJ, Brynildsen MP.

PLoS Comput Biol. 2015 Nov 6;11(11):e1004562. doi: 10.1371/journal.pcbi.1004562. eCollection 2015 Nov.

18.

Analyzing Persister Physiology with Fluorescence-Activated Cell Sorting.

Orman MA, Henry TC, DeCoste CJ, Brynildsen MP.

Methods Mol Biol. 2016;1333:83-100. doi: 10.1007/978-1-4939-2854-5_8.

19.

Stationary-Phase Persisters to Ofloxacin Sustain DNA Damage and Require Repair Systems Only during Recovery.

Völzing KG, Brynildsen MP.

MBio. 2015 Sep 1;6(5):e00731-15. doi: 10.1128/mBio.00731-15.

20.

Persister Heterogeneity Arising from a Single Metabolic Stress.

Amato SM, Brynildsen MP.

Curr Biol. 2015 Aug 17;25(16):2090-8. doi: 10.1016/j.cub.2015.06.034. Epub 2015 Aug 6.

21.

Inhibition of stationary phase respiration impairs persister formation in E. coli.

Orman MA, Brynildsen MP.

Nat Commun. 2015 Aug 6;6:7983. doi: 10.1038/ncomms8983. Erratum in: Nat Commun. 2016;7:10756.

22.

An ensemble-guided approach identifies ClpP as a major regulator of transcript levels in nitric oxide-stressed Escherichia coli.

Robinson JL, Brynildsen MP.

Metab Eng. 2015 Sep;31:22-34. doi: 10.1016/j.ymben.2015.06.005. Epub 2015 Jun 22.

PMID:
26112956
23.

Futile cycling increases sensitivity toward oxidative stress in Escherichia coli.

Adolfsen KJ, Brynildsen MP.

Metab Eng. 2015 May;29:26-35. doi: 10.1016/j.ymben.2015.02.006. Epub 2015 Feb 27.

24.

Impacts of global transcriptional regulators on persister metabolism.

Mok WW, Orman MA, Brynildsen MP.

Antimicrob Agents Chemother. 2015 May;59(5):2713-9. doi: 10.1128/AAC.04908-14. Epub 2015 Feb 23.

25.

Aminoglycoside-enabled elucidation of bacterial persister metabolism.

Orman MA, Mok WW, Brynildsen MP.

Curr Protoc Microbiol. 2015 Feb 2;36:17.9.1-14. doi: 10.1002/9780471729259.mc1709s36.

26.

Deciphering nitric oxide stress in bacteria with quantitative modeling.

Robinson JL, Adolfsen KJ, Brynildsen MP.

Curr Opin Microbiol. 2014 Jun;19:16-24. doi: 10.1016/j.mib.2014.05.018. Epub 2014 Jun 29.

27.

Nutrient transitions are a source of persisters in Escherichia coli biofilms.

Amato SM, Brynildsen MP.

PLoS One. 2014 Mar 25;9(3):e93110. doi: 10.1371/journal.pone.0093110. eCollection 2014.

28.

The role of metabolism in bacterial persistence.

Amato SM, Fazen CH, Henry TC, Mok WW, Orman MA, Sandvik EL, Volzing KG, Brynildsen MP.

Front Microbiol. 2014 Mar 3;5:70. doi: 10.3389/fmicb.2014.00070. eCollection 2014. Review.

29.

Establishment of a method to rapidly assay bacterial persister metabolism.

Orman MA, Brynildsen MP.

Antimicrob Agents Chemother. 2013 Sep;57(9):4398-409. doi: 10.1128/AAC.00372-13. Epub 2013 Jul 1.

30.

Metabolic control of persister formation in Escherichia coli.

Amato SM, Orman MA, Brynildsen MP.

Mol Cell. 2013 May 23;50(4):475-87. doi: 10.1016/j.molcel.2013.04.002. Epub 2013 May 9.

31.

A kinetic platform to determine the fate of nitric oxide in Escherichia coli.

Robinson JL, Brynildsen MP.

PLoS Comput Biol. 2013;9(5):e1003049. doi: 10.1371/journal.pcbi.1003049. Epub 2013 May 2.

32.

Dormancy is not necessary or sufficient for bacterial persistence.

Orman MA, Brynildsen MP.

Antimicrob Agents Chemother. 2013 Jul;57(7):3230-9. doi: 10.1128/AAC.00243-13. Epub 2013 Apr 29.

33.

Potentiating antibacterial activity by predictably enhancing endogenous microbial ROS production.

Brynildsen MP, Winkler JA, Spina CS, MacDonald IC, Collins JJ.

Nat Biotechnol. 2013 Feb;31(2):160-5. doi: 10.1038/nbt.2458. Epub 2013 Jan 6.

34.

Heterogeneous bacterial persisters and engineering approaches to eliminate them.

Allison KR, Brynildsen MP, Collins JJ.

Curr Opin Microbiol. 2011 Oct;14(5):593-8. doi: 10.1016/j.mib.2011.09.002. Epub 2011 Sep 19. Review.

35.

Metabolite-enabled eradication of bacterial persisters by aminoglycosides.

Allison KR, Brynildsen MP, Collins JJ.

Nature. 2011 May 12;473(7346):216-20. doi: 10.1038/nature10069.

36.

An integrated network approach identifies the isobutanol response network of Escherichia coli.

Brynildsen MP, Liao JC.

Mol Syst Biol. 2009;5:277. doi: 10.1038/msb.2009.34. Epub 2009 Jun 16.

37.

Systems biology makes it personal.

Brynildsen MP, Collins JJ.

Mol Cell. 2009 Apr 24;34(2):137-8. doi: 10.1016/j.molcel.2009.04.004.

38.

Metabolic engineering of Escherichia coli for 1-butanol production.

Atsumi S, Cann AF, Connor MR, Shen CR, Smith KM, Brynildsen MP, Chou KJ, Hanai T, Liao JC.

Metab Eng. 2008 Nov;10(6):305-11. Epub 2007 Sep 14.

PMID:
17942358
39.

Biological network mapping and source signal deduction.

Brynildsen MP, Wu TY, Jang SS, Liao JC.

Bioinformatics. 2007 Jul 15;23(14):1783-91. Epub 2007 May 11.

PMID:
17495996
40.

A Gibbs sampler for the identification of gene expression and network connectivity consistency.

Brynildsen MP, Tran LM, Liao JC.

Bioinformatics. 2006 Dec 15;22(24):3040-6. Epub 2006 Oct 23.

PMID:
17060361
41.

Versatility and connectivity efficiency of bipartite transcription networks.

Brynildsen MP, Tran LM, Liao JC.

Biophys J. 2006 Oct 15;91(8):2749-59. Epub 2006 Jun 30.

42.

Transcriptional regulation and metabolism.

Brynildsen MP, Wong WW, Liao JC.

Biochem Soc Trans. 2005 Dec;33(Pt 6):1423-6.

PMID:
16246136
43.

Inferring yeast cell cycle regulators and interactions using transcription factor activities.

Yang YL, Suen J, Brynildsen MP, Galbraith SJ, Liao JC.

BMC Genomics. 2005 Jun 10;6:90.

44.

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