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Whole genome sequencing in drug susceptibility testing of Mycobacterium tuberculosis in routine practice in Lyon, France.

Genestet C, Hodille E, Berland JL, Ginevra C, Bryant JE, Ader F, Lina G, Dumitrescu O; Lyon TB study group.

Int J Antimicrob Agents. 2020 Jan 25:105912. doi: 10.1016/j.ijantimicag.2020.105912. [Epub ahead of print]


Self-Identified African Americans and prostate cancer risk: West African genetic ancestry is associated with prostate cancer diagnosis and with higher Gleason sum on biopsy.

Grizzle WE, Kittles RA, Rais-Bahrami S, Shah E, Adams GW, DeGuenther MS, Kolettis PN, Nix JW, Bryant JE, Chinsky R, Kearns JE, Dehimer K, Terrin N, Chang H, Gaston SM.

Cancer Med. 2019 Nov;8(16):6915-6922. doi: 10.1002/cam4.2434. Epub 2019 Sep 30.


Ketamine induced changes in regional cerebral blood flow, interregional connectivity patterns, and glutamate metabolism.

Bryant JE, Frölich M, Tran S, Reid MA, Lahti AC, Kraguljac NV.

J Psychiatr Res. 2019 Oct;117:108-115. doi: 10.1016/j.jpsychires.2019.07.008. Epub 2019 Jul 27.


Poultry trading behaviours in Vietnamese live bird markets as risk factors for avian influenza infection in chickens.

Sealy JE, Fournie G, Trang PH, Dang NH, Sadeyen JR, Thanh TL, van Doorn HR, Bryant JE, Iqbal M.

Transbound Emerg Dis. 2019 Nov;66(6):2507-2516. doi: 10.1111/tbed.13308. Epub 2019 Aug 9.


Clinical Evaluation of a Multiplex PCR for the Detection of Salmonella enterica Serovars Typhi and Paratyphi A from Blood Specimens in a High-Endemic Setting.

Pouzol S, Tanmoy AM, Ahmed D, Khanam F, Brooks WA, Bhuyan GS, Fabre L, Bryant JE, Gustin MP, Vanhems P, Carman B, Weill FX, Qadri F, Saha S, Endtz H.

Am J Trop Med Hyg. 2019 Sep;101(3):513-520. doi: 10.4269/ajtmh.18-0992.


Subcultured Mycobacterium tuberculosis isolates on different growth media are fully representative of bacteria within clinical samples.

Genestet C, Hodille E, Westeel E, Ginevra C, Ader F, Venner S, Lina G, Bryant JE, Berland JL, Dumitrescu O; Lyon TB study group.

Tuberculosis (Edinb). 2019 May;116:61-66. doi: 10.1016/ Epub 2019 May 9.


Clinical Manifestations and Molecular Diagnosis of Scrub Typhus and Murine Typhus, Vietnam, 2015-2017.

Trung NV, Hoi LT, Dien VM, Huong DT, Hoa TM, Lien VN, Van Luan P, Lewycka SO, Choisy M, Bryant JE, Nadjm B, Rogier van Doorn H, Richards AL, Van Kinh N.

Emerg Infect Dis. 2019 Apr;25(4). doi: 10.3201/eid2504.180691.


Prospective Whole-Genome Sequencing in Tuberculosis Outbreak Investigation, France, 2017-2018.

Genestet C, Tatai C, Berland JL, Claude JB, Westeel E, Hodille E, Fredenucci I, Rasigade JP, Ponsoda M, Jacomo V, Vachée A, Gaudart A, Gaillard JL, Roux AL, Ader F, Tararbit K, Terpant G, Bryant JE, Lina G, Dumitrescu O; Lyon TB Study Group.

Emerg Infect Dis. 2019 Mar;25(3):589-592. doi: 10.3201/eid2503.181124.


Association of Increased Receptor-Binding Avidity of Influenza A(H9N2) Viruses with Escape from Antibody-Based Immunity and Enhanced Zoonotic Potential.

Sealy JE, Yaqub T, Peacock TP, Chang P, Ermetal B, Clements A, Sadeyen JR, Mehboob A, Shelton H, Bryant JE, Daniels RS, McCauley JW, Iqbal M.

Emerg Infect Dis. 2018 Jan;25(1):63-72. doi: 10.3201/eid2501.180616.


Nonannual seasonality of influenza-like illness in a tropical urban setting.

Lam HM, Wesolowski A, Hung NT, Nguyen TD, Nhat NTD, Todd S, Vinh DN, Vy NHT, Thao TTN, Thanh NTL, Tin PT, Minh NNQ, Bryant JE, Buckee CO, Ngoc TV, Chau NVV, Thwaites GE, Farrar J, Tam DTH, Vinh H, Boni MF.

Influenza Other Respir Viruses. 2018 Nov;12(6):742-754. doi: 10.1111/irv.12595. Epub 2018 Aug 21.


Antigenic characterization of highly pathogenic avian influenza A(H5N1) viruses with chicken and ferret antisera reveals clade-dependent variation in hemagglutination inhibition profiles.

Thi Nguyen D, Shepard SS, Burke DF, Jones J, Thor S, Nguyen LV, Nguyen TD, Balish A, Hoang DN, To TL, Iqbal M, Wentworth DE, Spackman E, van Doorn HR, Davis CT, Bryant JE.

Emerg Microbes Infect. 2018 May 31;7(1):100. doi: 10.1038/s41426-018-0100-7.


Detection and Characterization of Homologues of Human Hepatitis Viruses and Pegiviruses in Rodents and Bats in Vietnam.

Van Nguyen D, Van Nguyen C, Bonsall D, Ngo TT, Carrique-Mas J, Pham AH, Bryant JE, Thwaites G, Baker S, Woolhouse M, Simmonds P.

Viruses. 2018 Feb 28;10(3). pii: E102. doi: 10.3390/v10030102.


Genetic diversity and cross-species transmission of kobuviruses in Vietnam.

Lu L, Van Dung N, Ivens A, Bogaardt C, O'Toole A, Bryant JE, Carrique-Mas J, Van Cuong N, Anh PH, Rabaa MA, Tue NT, Thwaites GE, Baker S, Simmonds P, Woolhouse ME; VIZIONS Consortium.

Virus Evol. 2018 Feb 13;4(1):vey002. doi: 10.1093/ve/vey002. eCollection 2018 Jan.


The Application of NHEJ-CRISPR/Cas9 and Cre-Lox System in the Generation of Bivalent Duck Enteritis Virus Vaccine against Avian Influenza Virus.

Chang P, Yao Y, Tang N, Sadeyen JR, Sealy J, Clements A, Bhat S, Munir M, Bryant JE, Iqbal M.

Viruses. 2018 Feb 13;10(2). pii: E81. doi: 10.3390/v10020081.


Pharmacy students' use and perceptions of Apple mobile devices incorporated into a basic health science laboratory.

Bryant JE, Richard CAH.

Curr Pharm Teach Learn. 2017 Jan - Feb;9(1):78-83. doi: 10.1016/j.cptl.2016.08.044. Epub 2016 Oct 26.


Host Transcription Profile in Nasal Epithelium and Whole Blood of Hospitalized Children Under 2 Years of Age With Respiratory Syncytial Virus Infection.

Do LAH, Pellet J, van Doorn HR, Tran AT, Nguyen BH, Tran TTL, Tran QH, Vo QB, Tran Dac NA, Trinh HN, Nguyen TTH, Le Binh BT, Nguyen HMK, Nguyen MT, Thai QT, Vo TV, Ngo NQM, Dang TKH, Cao NH, Tran TV, Ho LV, De Meulder B, Auffray C, Hofstra JJ, Farrar J, Bryant JE, de Jong M, Hibberd ML.

J Infect Dis. 2017 Dec 27;217(1):134-146. doi: 10.1093/infdis/jix519.


Assessing evidence for avian-to-human transmission of influenza A/H9N2 virus in rural farming communities in northern Vietnam.

Hoa LNM, Tuan NA, My PH, Huong TTK, Chi NTY, Hau Thu TT, Carrique-Mas J, Duong MT, Tho ND, Hoang ND, Thanh TL, Diep NT, Duong NV, Toan TK, Tung TS, Mai LQ, Iqbal M, Wertheim H, van Doorn HR, Bryant JE, The Vizions Consortium.

J Gen Virol. 2017 Aug;98(8):2011-2016. doi: 10.1099/jgv.0.000877. Epub 2017 Aug 4.


Epigenetic risk score improves prostate cancer risk assessment.

Van Neste L, Groskopf J, Grizzle WE, Adams GW, DeGuenther MS, Kolettis PN, Bryant JE, Kearney GP, Kearney MC, Van Criekinge W, Gaston SM.

Prostate. 2017 Sep;77(12):1259-1264. doi: 10.1002/pros.23385. Epub 2017 Aug 1.


Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection.

Phan MVT, Anh PH, Cuong NV, Munnink BBO, van der Hoek L, My PT, Tri TN, Bryant JE, Baker S, Thwaites G, Woolhouse M, Kellam P, Rabaa MA, Cotten M; VIZIONS Consortium.

Virus Evol. 2016 Oct 3;2(2):vew027. doi: 10.1093/ve/vew027. eCollection 2016 Jul.


Seroprevalence of Scrub Typhus, Typhus, and Spotted Fever Among Rural and Urban Populations of Northern Vietnam.

Trung NV, Hoi LT, Thuong NTH, Toan TK, Huong TTK, Hoa TM, Fox A, Kinh NV, van Doorn HR, Wertheim HFL, Bryant JE, Nadjm B.

Am J Trop Med Hyg. 2017 May;96(5):1084-1087. doi: 10.4269/ajtmh.16-0399.


Immune Escape Variants of H9N2 Influenza Viruses Containing Deletions at the Hemagglutinin Receptor Binding Site Retain Fitness In Vivo and Display Enhanced Zoonotic Characteristics.

Peacock TP, Benton DJ, James J, Sadeyen JR, Chang P, Sealy JE, Bryant JE, Martin SR, Shelton H, Barclay WS, Iqbal M.

J Virol. 2017 Jun 26;91(14). pii: e00218-17. doi: 10.1128/JVI.00218-17. Print 2017 Jul 15.


Detection of potentially novel paramyxovirus and coronavirus viral RNA in bats and rats in the Mekong Delta region of southern Viet Nam.

Berto A, Anh PH, Carrique-Mas JJ, Simmonds P, Van Cuong N, Tue NT, Van Dung N, Woolhouse ME, Smith I, Marsh GA, Bryant JE, Thwaites GE, Baker S, Rabaa MA; VIZIONS consortium.

Zoonoses Public Health. 2018 Feb;65(1):30-42. doi: 10.1111/zph.12362. Epub 2017 Apr 18.


Variability in H9N2 haemagglutinin receptor-binding preference and the pH of fusion.

Peacock TP, Benton DJ, Sadeyen JR, Chang P, Sealy JE, Bryant JE, Martin SR, Shelton H, McCauley JW, Barclay WS, Iqbal M.

Emerg Microbes Infect. 2017 Mar 22;6(3):e11. doi: 10.1038/emi.2016.139.


Shifting Clade Distribution, Reassortment, and Emergence of New Subtypes of Highly Pathogenic Avian Influenza A(H5) Viruses Collected from Vietnamese Poultry from 2012 to 2015.

Nguyen DT, Jang Y, Nguyen TD, Jones J, Shepard SS, Yang H, Gerloff N, Fabrizio T, Nguyen LV, Inui K, Yang G, Creanga A, Wang L, Mai DT, Thor S, Stevens J, To TL, Wentworth DE, Nguyen T, Pham DV, Bryant JE, Davis CT.

J Virol. 2017 Feb 14;91(5). pii: e01708-16. doi: 10.1128/JVI.01708-16. Print 2017 Mar 1.


Global population divergence and admixture of the brown rat (Rattus norvegicus).

Puckett EE, Park J, Combs M, Blum MJ, Bryant JE, Caccone A, Costa F, Deinum EE, Esther A, Himsworth CG, Keightley PD, Ko A, Lundkvist Å, McElhinney LM, Morand S, Robins J, Russell J, Strand TM, Suarez O, Yon L, Munshi-South J.

Proc Biol Sci. 2016 Oct 26;283(1841). pii: 20161762.


Evolution and phylogeographic dissemination of endemic porcine picornaviruses in Vietnam.

Lu L, Van Dung N, Bryant JE, Carrique-Mas J, Van Cuong N, Anh PH, Rabaa MA, Baker S, Simmonds P, Woolhouse ME.

Virus Evol. 2016 Feb 18;2(1):vew001. eCollection 2016 Jan.


Gastrointestinal helminths of Coyotes (Canis latrans) from Southeast Nebraska and Shenandoah area of Iowa.

Redman WK, Bryant JE, Ahmad G.

Vet World. 2016 Sep;9(9):970-975. Epub 2016 Sep 15.


Respiratory Syncytial Virus and Other Viral Infections among Children under Two Years Old in Southern Vietnam 2009-2010: Clinical Characteristics and Disease Severity.

Do LA, Bryant JE, Tran AT, Nguyen BH, Tran TT, Tran QH, Vo QB, Tran Dac NA, Trinh HN, Nguyen TT, Le Binh BT, Le K, Nguyen MT, Thai QT, Vo TV, Ngo NQ, Dang TK, Cao NH, Tran TV, Ho LV, Farrar J, de Jong M, van Doorn HR.

PLoS One. 2016 Aug 8;11(8):e0160606. doi: 10.1371/journal.pone.0160606. eCollection 2016.


Epidemiology and etiology of influenza-like-illness in households in Vietnam; it's not all about the kids!

Nguyen DNT, Mai LQ, Bryant JE, Hang NLK, Hoa LNM, Nadjm B, Thai PQ, Duong TN, Anh DD, Horby P, van Doorn HR, Wertheim HFL, Fox A.

J Clin Virol. 2016 Sep;82:126-132. doi: 10.1016/j.jcv.2016.07.014. Epub 2016 Jul 26.


Prevalence and diversity of H9N2 avian influenza in chickens of Northern Vietnam, 2014.

Thuy DM, Peacock TP, Bich VTN, Fabrizio T, Hoang DN, Tho ND, Diep NT, Nguyen M, Hoa LNM, Trang HTT, Choisy M, Inui K, Newman S, Trung NV, van Doorn R, To TL, Iqbal M, Bryant JE.

Infect Genet Evol. 2016 Oct;44:530-540. doi: 10.1016/j.meegid.2016.06.038. Epub 2016 Jun 20.


Association between Hemagglutinin Stem-Reactive Antibodies and Influenza A/H1N1 Virus Infection during the 2009 Pandemic.

Hoa LNM, Mai LQ, Bryant JE, Thai PQ, Hang NLK, Yen NTT, Duong TN, Thoang DD, Horby P, Werheim HFL, Fox A.

J Virol. 2016 Jun 24;90(14):6549-6556. doi: 10.1128/JVI.00093-16. Print 2016 Jul 15.


The baseline characteristics and interim analyses of the high-risk sentinel cohort of the Vietnam Initiative on Zoonotic InfectiONS (VIZIONS).

Carrique-Mas JJ, Tue NT, Bryant JE, Saylors K, Cuong NV, Hoa NT, An NN, Hien VB, Lao PV, Tu NC, Chuyen NK, Chuc NT, Tan DV, Duong HV, Toan TK, Chi NT, Campbell J, Rabaa MA, Nadjm B, Woolhouse M, Wertheim H, Thwaites G, Baker S.

Sci Rep. 2015 Dec 10;5:17965. doi: 10.1038/srep17965.


Large-scale screening and characterization of enteroviruses and kobuviruses infecting pigs in Vietnam.

Van Dung N, Anh PH, Van Cuong N, Hoa NT, Carrique-Mas J, Hien VB, Sharp C, Rabaa M, Berto A, Campbell J, Baker S, Farrar J, Woolhouse ME, Bryant JE, Simmonds P.

J Gen Virol. 2016 Feb;97(2):378-388. doi: 10.1099/jgv.0.000366. Epub 2015 Dec 9.


Determination of cut-off cycle threshold values in routine RT-PCR assays to assist differential diagnosis of norovirus in children hospitalized for acute gastroenteritis.

Trang NV, Choisy M, Nakagomi T, Chinh NT, Doan YH, Yamashiro T, Bryant JE, Nakagomi O, Anh DD.

Epidemiol Infect. 2015 Nov;143(15):3292-9. doi: 10.1017/S095026881500059X.


Direct whole-genome deep-sequencing of human respiratory syncytial virus A and B from Vietnamese children identifies distinct patterns of inter- and intra-host evolution.

Do LA, Wilm A, Van Doorn HR, Lam HM, Sim S, Sukumaran R, Tran AT, Nguyen BH, Tran TT, Tran QH, Vo QB, Dac NA, Trinh HN, Nguyen TT, Binh BT, Le K, Nguyen MT, Thai QT, Vo TV, Ngo NQ, Dang TK, Cao NH, Tran TV, Ho LV, Farrar J, Jong Md, Chen S, Nagarajan N, Bryant JE, Hibberd ML.

J Gen Virol. 2015 Dec;96(12):3470-83.


The Vietnam Initiative on Zoonotic Infections (VIZIONS): A Strategic Approach to Studying Emerging Zoonotic Infectious Diseases.

Rabaa MA, Tue NT, Phuc TM, Carrique-Mas J, Saylors K, Cotten M, Bryant JE, Nghia HD, Cuong NV, Pham HA, Berto A, Phat VV, Dung TT, Bao LH, Hoa NT, Wertheim H, Nadjm B, Monagin C, van Doorn HR, Rahman M, Tra MP, Campbell JI, Boni MF, Tam PT, van der Hoek L, Simmonds P, Rambaut A, Toan TK, Van Vinh Chau N, Hien TT, Wolfe N, Farrar JJ, Thwaites G, Kellam P, Woolhouse ME, Baker S.

Ecohealth. 2015 Dec;12(4):726-35. doi: 10.1007/s10393-015-1061-0. Epub 2015 Sep 24. Review.


A dengue outbreak on a floating village at Cat Ba Island in Vietnam.

Le Viet T, Choisy M, Bryant JE, Vu Trong D, Pham Quang T, Horby P, Nguyen Tran H, Tran Thi Kieu H, Nguyen Vu T, Nguyen Van K, Le Quynh M, Wertheim HF.

BMC Public Health. 2015 Sep 22;15:940. doi: 10.1186/s12889-015-2235-y.


Overview of Clinical Pathology and the Horse.

Lester SJ, Mollat WH, Bryant JE.

Vet Clin North Am Equine Pract. 2015 Aug;31(2):247-68. doi: 10.1016/j.cveq.2015.04.004. Review.


Diversity of Bartonella spp. in Bats, Southern Vietnam.

Anh PH, Van Cuong N, Son NT, Tue NT, Kosoy M, Woolhouse ME, Baker S, Bryant JE, Thwaites G, Carrique-Mas JJ, Rabaa MA.

Emerg Infect Dis. 2015 Jul;21(7):1266-7. doi: 10.3201/eid2107.141760. No abstract available.


Temporal and spatial association of Streptococcus suis infection in humans and porcine reproductive and respiratory syndrome outbreaks in pigs in northern Vietnam.

Huong VT, Thanh LV, Phu VD, Trinh DT, Inui K, Tung N, Oanh NT, Trung NV, Hoa NT, Bryant JE, Horby PW, Kinh NV, Wertheim HF.

Epidemiol Infect. 2016 Jan;144(1):35-44. doi: 10.1017/S0950268815000990. Epub 2015 May 22.


Pharmacy students' preference for using mobile devices in a clinical setting for practice-related tasks.

Richard CA, Hastings JF, Bryant JE.

Am J Pharm Educ. 2015 Mar 25;79(2):22. doi: 10.5688/ajpe79222.


High levels of contamination and antimicrobial-resistant non-typhoidal Salmonella serovars on pig and poultry farms in the Mekong Delta of Vietnam.

Tu LT, Hoang NV, Cuong NV, Campbell J, Bryant JE, Hoa NT, Kiet BT, Thompson C, Duy DT, Phat VV, Hien VB, Thwaites G, Baker S, Carrique-Mas JJ.

Epidemiol Infect. 2015 Oct;143(14):3074-86. doi: 10.1017/S0950268815000102. Epub 2015 Mar 17.


Population susceptibility to a variant swine-origin influenza virus A(H3N2) in Vietnam, 2011-2012.

Hoa LN, Bryant JE, Choisy M, Nguyet LA, Bao NT, Trang NH, Chuc NT, Toan TK, Saito T, Takemae N, Horby P, Wertheim H, Fox A.

Epidemiol Infect. 2015 Oct;143(14):2959-64. doi: 10.1017/S0950268815000187. Epub 2015 Mar 12.


Rodents and risk in the Mekong Delta of Vietnam: seroprevalence of selected zoonotic viruses in rodents and humans.

Van Cuong N, Carrique-Mas J, Vo Be H, An NN, Tue NT, Anh NL, Anh PH, Phuc NT, Baker S, Voutilainen L, Jääskeläinen A, Huhtamo E, Utriainen M, Sironen T, Vaheri A, Henttonen H, Vapalahti O, Chaval Y, Morand S, Bryant JE.

Vector Borne Zoonotic Dis. 2015 Jan;15(1):65-72. doi: 10.1089/vbz.2014.1603.


How important are rats as vectors of leptospirosis in the Mekong Delta of Vietnam?

Loan HK, Van Cuong N, Takhampunya R, Kiet BT, Campbell J, Them LN, Bryant JE, Tippayachai B, Van Hoang N, Morand S, Hien VB, Carrique-Mas JJ.

Vector Borne Zoonotic Dis. 2015 Jan;15(1):56-64. doi: 10.1089/vbz.2014.1613.


Prevalence and distribution of avian influenza a(H5N1) virus clade variants in live bird markets of Vietnam, 2011-2013.

Nguyen DT, Bryant JE, Davis CT, Nguyen LV, Pham LT, Loth L, Inui K, Nguyen T, Jang Y, To TL, Nguyen TD, Hoang DT, Do HT, Nguyen TT, Newman S, Jennifer Siembieda, Pham DV.

Avian Dis. 2014 Dec;58(4):599-608.


High levels of antimicrobial resistance among escherichia coli isolates from livestock farms and synanthropic rats and shrews in the Mekong Delta of Vietnam.

Nhung NT, Cuong NV, Campbell J, Hoa NT, Bryant JE, Truc VN, Kiet BT, Jombart T, Trung NV, Hien VB, Thwaites G, Baker S, Carrique-Mas J.

Appl Environ Microbiol. 2015 Feb;81(3):812-20. doi: 10.1128/AEM.03366-14. Epub 2014 Nov 14.


Raw pig blood consumption and potential risk for Streptococcus suis infection, Vietnam.

Huong VT, Hoa NT, Horby P, Bryant JE, Van Kinh N, Toan TK, Wertheim HF.

Emerg Infect Dis. 2014 Nov;20(11):1895-8. doi: 10.3201/eid2011.140915.


Hemagglutination inhibiting antibodies and protection against seasonal and pandemic influenza infection.

Fox A, Mai le Q, Thanh le T, Wolbers M, Le Khanh Hang N, Thai PQ, Thi Thu Yen N, Minh Hoa le N, Bryant JE, Duong TN, Thoang DD, Barr IG, Wertheim H, Farrar J, Hien NT, Horby P.

J Infect. 2015 Feb;70(2):187-96. doi: 10.1016/j.jinf.2014.09.003. Epub 2014 Sep 16.


Novel porcine-like human G26P[19] rotavirus identified in hospitalized paediatric diarrhoea patients in Ho Chi Minh City, Vietnam.

My PV, Rabaa MA, Donato C, Cowley D, Phat VV, Dung TT, Anh PH, Vinh H, Bryant JE, Kellam P, Thwaites G, Woolhouse ME, Kirkwood CD, Baker S.

J Gen Virol. 2014 Dec;95(Pt 12):2727-33. doi: 10.1099/vir.0.068403-0. Epub 2014 Aug 13.

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