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Intestinal microbes influence development of thymic lymphocytes in early life.

Ennamorati M, Vasudevan C, Clerkin K, Halvorsen S, Verma S, Ibrahim S, Prosper S, Porter C, Yeliseyev V, Kim M, Gardecki J, Sassi S, Tearney G, Cherayil BJ, Bry L, Seed B, Jain N.

Proc Natl Acad Sci U S A. 2020 Jan 21. pii: 201915047. doi: 10.1073/pnas.1915047117. [Epub ahead of print]


Clinical Predictors of Recurrence After Primary Clostridioides difficile Infection: A Prospective Cohort Study.

Allegretti JR, Marcus J, Storm M, Sitko J, Kennedy K, Gerber GK, Bry L.

Dig Dis Sci. 2019 Oct 30. doi: 10.1007/s10620-019-05900-3. [Epub ahead of print]


Author Correction: Microbiota therapy acts via a regulatory T cell MyD88/RORγt pathway to suppress food allergy.

Abdel-Gadir A, Stephen-Victor E, Gerber GK, Noval Rivas M, Wang S, Harb H, Wang L, Li N, Crestani E, Spielman S, Secor W, Biehl H, DiBenedetto N, Dong X, Umetsu DT, Bry L, Rachid R, Chatila TA.

Nat Med. 2019 Sep;25(9):1458. doi: 10.1038/s41591-019-0572-6.


Engineered Interspecies Amino Acid Cross-Feeding Increases Population Evenness in a Synthetic Bacterial Consortium.

Ziesack M, Gibson T, Oliver JKW, Shumaker AM, Hsu BB, Riglar DT, Giessen TW, DiBenedetto NV, Bry L, Way JC, Silver PA, Gerber GK.

mSystems. 2019 Aug 13;4(4). pii: e00352-19. doi: 10.1128/mSystems.00352-19.


Intensive group behavioral treatment (IGBT) for children with selective mutism: A preliminary randomized clinical trial.

Cornacchio D, Furr JM, Sanchez AL, Hong N, Feinberg LK, Tenenbaum R, Del Busto C, Bry LJ, Poznanski B, Miguel E, Ollendick TH, Kurtz SMS, Comer JS.

J Consult Clin Psychol. 2019 Aug;87(8):720-733. doi: 10.1037/ccp0000422.


Microbiota therapy acts via a regulatory T cell MyD88/RORγt pathway to suppress food allergy.

Abdel-Gadir A, Stephen-Victor E, Gerber GK, Noval Rivas M, Wang S, Harb H, Wang L, Li N, Crestani E, Spielman S, Secor W, Biehl H, DiBenedetto N, Dong X, Umetsu DT, Bry L, Rachid R, Chatila TA.

Nat Med. 2019 Jul;25(7):1164-1174. doi: 10.1038/s41591-019-0461-z. Epub 2019 Jun 24. Erratum in: Nat Med. 2019 Sep;25(9):1458.


Dynamic Modulation of the Gut Microbiota and Metabolome by Bacteriophages in a Mouse Model.

Hsu BB, Gibson TE, Yeliseyev V, Liu Q, Lyon L, Bry L, Silver PA, Gerber GK.

Cell Host Microbe. 2019 Jun 12;25(6):803-814.e5. doi: 10.1016/j.chom.2019.05.001. Epub 2019 Jun 4.


Microbiota Contribute to Obesity-related Increases in the Pulmonary Response to Ozone.

Tashiro H, Cho Y, Kasahara DI, Brand JD, Bry L, Yeliseyev V, Abu-Ali G, Huttenhower C, Shore SA.

Am J Respir Cell Mol Biol. 2019 Dec;61(6):702-712. doi: 10.1165/rcmb.2019-0144OC.


Diverse Vectors and Mechanisms Spread New Delhi Metallo-β-Lactamases among Carbapenem-Resistant Enterobacteriaceae in the Greater Boston Area.

Pecora N, Zhao X, Nudel K, Hoffmann M, Li N, Onderdonk AB, Yokoe D, Brown E, Allard M, Bry L.

Antimicrob Agents Chemother. 2019 Jan 29;63(2). pii: e02040-18. doi: 10.1128/AAC.02040-18. Print 2019 Feb.


Gutting TMA to Save the Heart.

Crothers J, Bry L.

Cell Host Microbe. 2018 Oct 10;24(4):470-471. doi: 10.1016/j.chom.2018.09.014.


Silver-Coated Endotracheal Tubes Cleaned With a Mechanism for Secretion Removal.

Pirrone M, Imber DA, Marrazzo F, Pinciroli R, Zhang C, Bry L, Delaney ML, Dubois AM, Thomas JG, Nistico L, Melton-Kreft R, Bittner EA, Kacmarek RM, Berra L.

Respir Care. 2019 Jan;64(1):1-9. doi: 10.4187/respcare.06222. Epub 2018 Sep 4.


Quorum Sensing Can Be Repurposed To Promote Information Transfer between Bacteria in the Mammalian Gut.

Kim S, Kerns SJ, Ziesack M, Bry L, Gerber GK, Way JC, Silver PA.

ACS Synth Biol. 2018 Sep 21;7(9):2270-2281. doi: 10.1021/acssynbio.8b00271. Epub 2018 Aug 31.


A selective gut bacterial bile salt hydrolase alters host metabolism.

Yao L, Seaton SC, Ndousse-Fetter S, Adhikari AA, DiBenedetto N, Mina AI, Banks AS, Bry L, Devlin AS.

Elife. 2018 Jul 17;7. pii: e37182. doi: 10.7554/eLife.37182.


Gnotobiotic and Conventional Mouse Systems to Support Microbiota Based Studies.

Lavin R, DiBenedetto N, Yeliseyev V, Delaney M, Bry L.

Curr Protoc Immunol. 2018 Apr;121(1). pii: e48. doi: 10.1002/cpim.48. Epub 2018 Apr 16.


Diet, Genetics, and the Gut Microbiome Drive Dynamic Changes in Plasma Metabolites.

Fujisaka S, Avila-Pacheco J, Soto M, Kostic A, Dreyfuss JM, Pan H, Ussar S, Altindis E, Li N, Bry L, Clish CB, Kahn CR.

Cell Rep. 2018 Mar 13;22(11):3072-3086. doi: 10.1016/j.celrep.2018.02.060.


Consumer Smartphone Apps Marketed for Child and Adolescent Anxiety: A Systematic Review and Content Analysis.

Bry LJ, Chou T, Miguel E, Comer JS.

Behav Ther. 2018 Mar;49(2):249-261. doi: 10.1016/j.beth.2017.07.008. Epub 2017 Jul 29. Review.


Acetobacter indonesiensis Pneumonia after Lung Transplantation.

Basu SS, Delaney ML, Li N, Onderdonk AB, Bry L.

Emerg Infect Dis. 2018 Mar;24(3):598-599. doi: 10.3201/eid2403.170409.


Genomics of Corynebacterium striatum, an emerging multidrug-resistant pathogen of immunocompromised patients.

Nudel K, Zhao X, Basu S, Dong X, Hoffmann M, Feldgarden M, Allard M, Klompas M, Bry L.

Clin Microbiol Infect. 2018 Sep;24(9):1016.e7-1016.e13. doi: 10.1016/j.cmi.2017.12.024. Epub 2018 Jan 9.


Resilience to Discrimination and Rejection Among Young Sexual Minority Males and Transgender Females: A Qualitative Study on Coping With Minority Stress.

Bry LJ, Mustanski B, Garofalo R, Burns MN.

J Homosex. 2018;65(11):1435-1456. doi: 10.1080/00918369.2017.1375367. Epub 2017 Sep 29.


Macrophage dysfunction initiates colitis during weaning of infant mice lacking the interleukin-10 receptor.

Redhu NS, Bakthavatchalu V, Conaway EA, Shouval DS, Tsou A, Goettel JA, Biswas A, Wang C, Field M, Muller W, Bleich A, Li N, Gerber GK, Bry L, Fox JG, Snapper SB, Horwitz BH.

Elife. 2017 Jul 5;6. pii: e27652. doi: 10.7554/eLife.27652.


Regulation of Glucose Uptake and Enteroendocrine Function by the Intestinal Epithelial Insulin Receptor.

Ussar S, Haering MF, Fujisaka S, Lutter D, Lee KY, Li N, Gerber GK, Bry L, Kahn CR.

Diabetes. 2017 Apr;66(4):886-896. doi: 10.2337/db15-1349. Epub 2017 Jan 17.


Endotracheal Tubes Cleaned With a Novel Mechanism for Secretion Removal: A Randomized Controlled Clinical Study.

Pinciroli R, Mietto C, Piriyapatsom A, Chenelle CT, Thomas JG, Pirrone M, Bry L, Wojtkiewicz GR, Nahrendorf MP, Kacmarek RM, Berra L.

Respir Care. 2016 Nov;61(11):1431-1439. Epub 2016 Jul 26.


Antibiotic effects on gut microbiota and metabolism are host dependent.

Fujisaka S, Ussar S, Clish C, Devkota S, Dreyfuss JM, Sakaguchi M, Soto M, Konishi M, Softic S, Altindis E, Li N, Gerber G, Bry L, Kahn CR.

J Clin Invest. 2016 Dec 1;126(12):4430-4443. doi: 10.1172/JCI86674. Epub 2016 Oct 24.


Management of a Concealable Stigmatized Identity: A Qualitative Study of Concealment, Disclosure, and Role Flexing Among Young, Resilient Sexual and Gender Minority Individuals.

Bry LJ, Mustanski B, Garofalo R, Burns MN.

J Homosex. 2017;64(6):745-769. doi: 10.1080/00918369.2016.1236574. Epub 2016 Sep 15.


Toward an Objective Diagnostic Test for Bacterial Cellulitis.

Pallin DJ, Bry L, Dwyer RC, Lipworth AD, Leung DY, Camargo CA Jr, Kupper TS, Filbin MR, Murphy GF.

PLoS One. 2016 Sep 22;11(9):e0162947. doi: 10.1371/journal.pone.0162947. eCollection 2016.


Children's Mental Health in the Context of Terrorist Attacks, Ongoing Threats, and Possibilities of Future Terrorism.

Comer JS, Bry LJ, Poznanski B, Golik AM.

Curr Psychiatry Rep. 2016 Sep;18(9):79. doi: 10.1007/s11920-016-0722-1. Review.


Alterations of the human gut microbiome in multiple sclerosis.

Jangi S, Gandhi R, Cox LM, Li N, von Glehn F, Yan R, Patel B, Mazzola MA, Liu S, Glanz BL, Cook S, Tankou S, Stuart F, Melo K, Nejad P, Smith K, Topçuolu BD, Holden J, Kivisäkk P, Chitnis T, De Jager PL, Quintana FJ, Gerber GK, Bry L, Weiner HL.

Nat Commun. 2016 Jun 28;7:12015. doi: 10.1038/ncomms12015.


Implementation of Electronic Consent at a Biobank: An Opportunity for Precision Medicine Research.

Boutin NT, Mathieu K, Hoffnagle AG, Allen NL, Castro VM, Morash M, O'Rourke PP, Hohmann EL, Herring N, Bry L, Slaugenhaupt SA, Karlson EW, Weiss ST, Smoller JW.

J Pers Med. 2016 Jun 9;6(2). pii: E17. doi: 10.3390/jpm6020017.


MDSINE: Microbial Dynamical Systems INference Engine for microbiome time-series analyses.

Bucci V, Tzen B, Li N, Simmons M, Tanoue T, Bogart E, Deng L, Yeliseyev V, Delaney ML, Liu Q, Olle B, Stein RR, Honda K, Bry L, Gerber GK.

Genome Biol. 2016 Jun 3;17(1):121. doi: 10.1186/s13059-016-0980-6.


Recurrent Clostridium difficile infection associates with distinct bile acid and microbiome profiles.

Allegretti JR, Kearney S, Li N, Bogart E, Bullock K, Gerber GK, Bry L, Clish CB, Alm E, Korzenik JR.

Aliment Pharmacol Ther. 2016 Jun;43(11):1142-53. doi: 10.1111/apt.13616. Epub 2016 Apr 18.


The Host Shapes the Gut Microbiota via Fecal MicroRNA.

Liu S, da Cunha AP, Rezende RM, Cialic R, Wei Z, Bry L, Comstock LE, Gandhi R, Weiner HL.

Cell Host Microbe. 2016 Jan 13;19(1):32-43. doi: 10.1016/j.chom.2015.12.005.


Postnatal epigenetic regulation of intestinal stem cells requires DNA methylation and is guided by the microbiome.

Yu DH, Gadkari M, Zhou Q, Yu S, Gao N, Guan Y, Schady D, Roshan TN, Chen MH, Laritsky E, Ge Z, Wang H, Chen R, Westwater C, Bry L, Waterland RA, Moriarty C, Hwang C, Swennes AG, Moore SR, Shen L.

Genome Biol. 2015 Sep 30;16:211. doi: 10.1186/s13059-015-0763-5.


Interactions between Gut Microbiota, Host Genetics and Diet Modulate the Predisposition to Obesity and Metabolic Syndrome.

Ussar S, Griffin NW, Bezy O, Fujisaka S, Vienberg S, Softic S, Deng L, Bry L, Gordon JI, Kahn CR.

Cell Metab. 2015 Sep 1;22(3):516-530. doi: 10.1016/j.cmet.2015.07.007. Epub 2015 Aug 20. Erratum in: Cell Metab. 2016 Mar 8;23(3):564-6.


MyD88 Adaptor-Dependent Microbial Sensing by Regulatory T Cells Promotes Mucosal Tolerance and Enforces Commensalism.

Wang S, Charbonnier LM, Noval Rivas M, Georgiev P, Li N, Gerber G, Bry L, Chatila TA.

Immunity. 2015 Aug 18;43(2):289-303. doi: 10.1016/j.immuni.2015.06.014. Epub 2015 Jul 28.


Genomically Informed Surveillance for Carbapenem-Resistant Enterobacteriaceae in a Health Care System.

Pecora ND, Li N, Allard M, Li C, Albano E, Delaney M, Dubois A, Onderdonk AB, Bry L.

mBio. 2015 Jul 28;6(4):e01030. doi: 10.1128/mBio.01030-15.


Improving microbial fitness in the mammalian gut by in vivo temporal functional metagenomics.

Yaung SJ, Deng L, Li N, Braff JL, Church GM, Bry L, Wang HH, Gerber GK.

Mol Syst Biol. 2015 Mar;11(3):788.


Computational Pathology: A Path Ahead.

Louis DN, Feldman M, Carter AB, Dighe AS, Pfeifer JD, Bry L, Almeida JS, Saltz J, Braun J, Tomaszewski JE, Gilbertson JR, Sinard JH, Gerber GK, Galli SJ, Golden JA, Becich MJ.

Arch Pathol Lab Med. 2016 Jan;140(1):41-50. doi: 10.5858/arpa.2015-0093-SA. Epub 2015 Jun 22.


A Call to Standardize Preanalytic Data Elements for Biospecimens, Part II.

Robb JA, Bry L, Sluss PM, Wagar EA, Kennedy MF; College of American Pathologists Diagnostic Intelligence and Health Information Technology Biorepository Working Group 2.

Arch Pathol Lab Med. 2015 Sep;139(9):1125-8. doi: 10.5858/arpa.2014-0572-CP. Epub 2015 Jan 16.


Next generation sequencing in clinical diagnostics: experiences of early adopters.

Lyon E, Cockerill FR 3rd, Bale SJ, Beadling C, Bry L, Hagenkord J, Kulkarni S, Press R, Palomaki GE.

Clin Chem. 2015 Jan;61(1):41-9. doi: 10.1373/clinchem.2014.222687. Epub 2014 Nov 24. No abstract available.


Tracheal tube obstruction in mechanically ventilated patients assessed by high-resolution computed tomography.

Mietto C, Pinciroli R, Piriyapatsom A, Thomas JG, Bry L, Delaney ML, Du Bois A, Truelove J, Ackman JB, Wojtkiewicz GR, Nahrendorf M, Kacmarek RM, Berra L.

Anesthesiology. 2014 Dec;121(6):1226-35. doi: 10.1097/ALN.0000000000000455.


Computational pathology: an emerging definition.

Louis DN, Gerber GK, Baron JM, Bry L, Dighe AS, Getz G, Higgins JM, Kuo FC, Lane WJ, Michaelson JS, Le LP, Mermel CH, Gilbertson JR, Golden JA.

Arch Pathol Lab Med. 2014 Sep;138(9):1133-8. doi: 10.5858/arpa.2014-0034-ED. No abstract available.


College of American Pathologists' laboratory standards for next-generation sequencing clinical tests.

Aziz N, Zhao Q, Bry L, Driscoll DK, Funke B, Gibson JS, Grody WW, Hegde MR, Hoeltge GA, Leonard DG, Merker JD, Nagarajan R, Palicki LA, Robetorye RS, Schrijver I, Weck KE, Voelkerding KV.

Arch Pathol Lab Med. 2015 Apr;139(4):481-93. doi: 10.5858/arpa.2014-0250-CP. Epub 2014 Aug 25.


Dynamics of the microbiota in response to host infection.

Belzer C, Gerber GK, Roeselers G, Delaney M, DuBois A, Liu Q, Belavusava V, Yeliseyev V, Houseman A, Onderdonk A, Cavanaugh C, Bry L.

PLoS One. 2014 Jul 11;9(7):e95534. doi: 10.1371/journal.pone.0095534. eCollection 2014.


The business of genomic testing: a survey of early adopters.

Crawford JM, Bry L, Pfeifer J, Caughron SK, Black-Schaffer S, Kant JA, Kaufman JH.

Genet Med. 2014 Dec;16(12):954-61. doi: 10.1038/gim.2014.60. Epub 2014 Jul 10.


Glycation of the complement regulatory protein CD59 is a novel biomarker for glucose handling in humans.

Ghosh P, Vaidya A, Sahoo R, Goldfine A, Herring N, Bry L, Chorev M, Halperin JA.

J Clin Endocrinol Metab. 2014 Jun;99(6):E999-E1006. doi: 10.1210/jc.2013-4232. Epub 2014 Mar 14.


A specific and sensitive assay for blood levels of glycated CD59: a novel biomarker for diabetes.

Ghosh P, Sahoo R, Vaidya A, Cantel S, Kavishwar A, Goldfine A, Herring N, Bry L, Chorev M, Halperin JA.

Am J Hematol. 2013 Aug;88(8):670-6. doi: 10.1002/ajh.23478. Epub 2013 Jun 20.


Thymus-derived regulatory T cells contribute to tolerance to commensal microbiota.

Cebula A, Seweryn M, Rempala GA, Pabla SS, McIndoe RA, Denning TL, Bry L, Kraj P, Kisielow P, Ignatowicz L.

Nature. 2013 May 9;497(7448):258-62. doi: 10.1038/nature12079. Epub 2013 Apr 28.


A microbiota signature associated with experimental food allergy promotes allergic sensitization and anaphylaxis.

Noval Rivas M, Burton OT, Wise P, Zhang YQ, Hobson SA, Garcia Lloret M, Chehoud C, Kuczynski J, DeSantis T, Warrington J, Hyde ER, Petrosino JF, Gerber GK, Bry L, Oettgen HC, Mazmanian SK, Chatila TA.

J Allergy Clin Immunol. 2013 Jan;131(1):201-12. doi: 10.1016/j.jaci.2012.10.026. Epub 2012 Nov 30.


The short isoform of the CEACAM1 receptor in intestinal T cells regulates mucosal immunity and homeostasis via Tfh cell induction.

Chen L, Chen Z, Baker K, Halvorsen EM, da Cunha AP, Flak MB, Gerber G, Huang YH, Hosomi S, Arthur JC, Dery KJ, Nagaishi T, Beauchemin N, Holmes KV, Ho JW, Shively JE, Jobin C, Onderdonk AB, Bry L, Weiner HL, Higgins DE, Blumberg RS.

Immunity. 2012 Nov 16;37(5):930-46. doi: 10.1016/j.immuni.2012.07.016. Epub 2012 Nov 1.


Maternal intestinal flora and wheeze in early childhood.

Lange NE, Celedón JC, Forno E, Ly NP, Onderdonk A, Bry L, Delaney ML, DuBois AM, Gold DR, Weiss ST, Litonjua AA.

Clin Exp Allergy. 2012 Jun;42(6):901-8. doi: 10.1111/j.1365-2222.2011.03950.x.

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