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Taxonomic and functional insights into rock varnish microbiome using shotgun metagenomics.

Esposito A, Borruso L, Rattray JE, Brusetti L, Ahmed E.

FEMS Microbiol Ecol. 2019 Dec 1;95(12). pii: fiz180. doi: 10.1093/femsec/fiz180.


Site-Specific Microbial Decomposer Communities Do Not Imply Faster Decomposition: Results from a Litter Transplantation Experiment.

Bani A, Borruso L, Matthews Nicholass KJ, Bardelli T, Polo A, Pioli S, Gómez-Brandón M, Insam H, Dumbrell AJ, Brusetti L.

Microorganisms. 2019 Sep 12;7(9). pii: E349. doi: 10.3390/microorganisms7090349.


A Metagenomic-Based Approach for the Characterization of Bacterial Diversity Associated with Spontaneous Malolactic Fermentations in Wine.

Berbegal C, Borruso L, Fragasso M, Tufariello M, Russo P, Brusetti L, Spano G, Capozzi V.

Int J Mol Sci. 2019 Aug 15;20(16). pii: E3980. doi: 10.3390/ijms20163980.


Temporal shifts in endophyte bacterial community composition of sessile oak (Quercus petraea) are linked to foliar nitrogen, stomatal length, and herbivory.

Borruso L, Wellstein C, Bani A, Casagrande Bacchiocchi S, Margoni A, Tonin R, Zerbe S, Brusetti L.

PeerJ. 2018 Oct 12;6:e5769. doi: 10.7717/peerj.5769. eCollection 2018.


Bacterial microbiome of root-associated endophytes of Salicornia europaea in correspondence to different levels of salinity.

Szymańska S, Borruso L, Brusetti L, Hulisz P, Furtado B, Hrynkiewicz K.

Environ Sci Pollut Res Int. 2018 Sep;25(25):25420-25431. doi: 10.1007/s11356-018-2530-0. Epub 2018 Jun 27.


Metataxonomy and functionality of wood-tar degrading microbial consortia.

Brusetti L, Ciccazzo S, Borruso L, Bellucci M, Zaccone C, Beneduce L.

J Hazard Mater. 2018 Jul 5;353:108-117. doi: 10.1016/j.jhazmat.2018.03.041. Epub 2018 Apr 6.


Microbial Decomposer Dynamics: Diversity and Functionality Investigated through a Transplantation Experiment in Boreal Forests.

Bani A, Borruso L, Fornasier F, Pioli S, Wellstein C, Brusetti L.

Microb Ecol. 2018 Nov;76(4):1030-1040. doi: 10.1007/s00248-018-1181-5. Epub 2018 Mar 26.


Distribution of class 1 integrons in a highly impacted catchment.

Borruso L, Harms K, Johnsen PJ, Nielsen KM, Brusetti L.

Sci Total Environ. 2016 Oct 1;566-567:1588-1594. doi: 10.1016/j.scitotenv.2016.06.054. Epub 2016 Jun 14.


Diversity, ecological distribution and biotechnological potential of Actinobacteria inhabiting seamounts and non-seamounts in the Tyrrhenian Sea.

Ettoumi B, Chouchane H, Guesmi A, Mahjoubi M, Brusetti L, Neifar M, Borin S, Daffonchio D, Cherif A.

Microbiol Res. 2016 May-Jun;186-187:71-80. doi: 10.1016/j.micres.2016.03.006. Epub 2016 Apr 1.


Spatial and temporal variability of bacterial communities in high alpine water spring sediments.

Esposito A, Engel M, Ciccazzo S, Daprà L, Penna D, Comiti F, Zerbe S, Brusetti L.

Res Microbiol. 2016 May;167(4):325-333. doi: 10.1016/j.resmic.2015.12.006. Epub 2016 Jan 9.


The interaction between iron nutrition, plant species and soil type shapes the rhizosphere microbiome.

Pii Y, Borruso L, Brusetti L, Crecchio C, Cesco S, Mimmo T.

Plant Physiol Biochem. 2016 Feb;99:39-48. doi: 10.1016/j.plaphy.2015.12.002. Epub 2015 Dec 9.


Comparison of Rock Varnish Bacterial Communities with Surrounding Non-Varnished Rock Surfaces: Taxon-Specific Analysis and Morphological Description.

Esposito A, Ahmed E, Ciccazzo S, Sikorski J, Overmann J, Holmström SJ, Brusetti L.

Microb Ecol. 2015 Oct;70(3):741-50. doi: 10.1007/s00248-015-0617-4. Epub 2015 Apr 30.


Bacterial community structures as a diagnostic tool for watershed quality assessment.

Borruso L, Zerbe S, Brusetti L.

Res Microbiol. 2015 Jan;166(1):38-44. doi: 10.1016/j.resmic.2014.11.004. Epub 2014 Dec 11.


Rhizosphere effect and salinity competing to shape microbial communities in Phragmites australis (Cav.) Trin. ex-Steud.

Borruso L, Bacci G, Mengoni A, De Philippis R, Brusetti L.

FEMS Microbiol Lett. 2014 Oct;359(2):193-200. doi: 10.1111/1574-6968.12565. Epub 2014 Sep 8.


Different pioneer plant species select specific rhizosphere bacterial communities in a high mountain environment.

Ciccazzo S, Esposito A, Rolli E, Zerbe S, Daffonchio D, Brusetti L.

Springerplus. 2014 Jul 29;3:391. doi: 10.1186/2193-1801-3-391. eCollection 2014.


Safe-site effects on rhizosphere bacterial communities in a high-altitude alpine environment.

Ciccazzo S, Esposito A, Rolli E, Zerbe S, Daffonchio D, Brusetti L.

Biomed Res Int. 2014;2014:480170. doi: 10.1155/2014/480170. Epub 2014 Jun 4.


Ozonation effects for excess sludge reduction on bacterial communities composition in a full-scale activated sludge plant for domestic wastewater treatment.

Chiellini C, Gori R, Tiezzi A, Brusetti L, Pucciarelli S, D'Amato E, Chiavola A, Sirini P, Lubello C, Petroni G.

Environ Technol. 2014 May-Jun;35(9-12):1462-9.


Dietary supplementation of usnic acid, an antimicrobial compound in lichens, does not affect rumen bacterial diversity or density in reindeer.

Glad T, Barboza P, Mackie RI, Wright AD, Brusetti L, Mathiesen SD, Sundset MA.

Curr Microbiol. 2014 Jun;68(6):724-8. doi: 10.1007/s00284-014-0534-7. Epub 2014 Feb 9.


Microdiversity of deep-sea Bacillales isolated from Tyrrhenian sea sediments as revealed by ARISA, 16S rRNA gene sequencing and BOX-PCR fingerprinting.

Ettoumi B, Guesmi A, Brusetti L, Borin S, Najjari A, Boudabous A, Cherif A.

Microbes Environ. 2013;28(3):361-9. Epub 2013 Sep 5.


A three-scale analysis of bacterial communities involved in rocks colonization and soil formation in high mountain environments.

Esposito A, Ciccazzo S, Borruso L, Zerbe S, Daffonchio D, Brusetti L.

Curr Microbiol. 2013 Oct;67(4):472-9. doi: 10.1007/s00284-013-0391-9. Epub 2013 May 28.


Genome sequence of radiation-resistant Modestobacter marinus strain BC501, a representative actinobacterium that thrives on calcareous stone surfaces.

Normand P, Gury J, Pujic P, Chouaia B, Crotti E, Brusetti L, Daffonchio D, Vacherie B, Barbe V, Médigue C, Calteau A, Ghodhbane-Gtari F, Essoussi I, Nouioui I, Abbassi-Ghozzi I, Gtari M.

J Bacteriol. 2012 Sep;194(17):4773-4. doi: 10.1128/JB.01029-12.


Genome sequence of Blastococcus saxobsidens DD2, a stone-inhabiting bacterium.

Chouaia B, Crotti E, Brusetti L, Daffonchio D, Essoussi I, Nouioui I, Sbissi I, Ghodhbane-Gtari F, Gtari M, Vacherie B, Barbe V, Médigue C, Gury J, Pujic P, Normand P.

J Bacteriol. 2012 May;194(10):2752-3. doi: 10.1128/JB.00320-12.


An investigation of horizontal transfer of feed introduced DNA to the aerobic microbiota of the gastrointestinal tract of rats.

Nordgård L, Brusetti L, Raddadi N, Traavik T, Averhoff B, Nielsen KM.

BMC Res Notes. 2012 Apr 1;5:170. doi: 10.1186/1756-0500-5-170.


Contrasted resistance of stone-dwelling Geodermatophilaceae species to stresses known to give rise to reactive oxygen species.

Gtari M, Essoussi I, Maaoui R, Sghaier H, Boujmil R, Gury J, Pujic P, Brusetti L, Chouaia B, Crotti E, Daffonchio D, Boudabous A, Normand P.

FEMS Microbiol Ecol. 2012 Jun;80(3):566-77. doi: 10.1111/j.1574-6941.2012.01320.x. Epub 2012 Feb 17.


Restructuring of endophytic bacterial communities in grapevine yellows-diseased and recovered Vitis vinifera L. plants.

Bulgari D, Casati P, Crepaldi P, Daffonchio D, Quaglino F, Brusetti L, Bianco PA.

Appl Environ Microbiol. 2011 Jul;77(14):5018-22. doi: 10.1128/AEM.00051-11. Epub 2011 May 27.


Ecological characterisation of the colonic microbiota in arctic and sub-arctic seals.

Glad T, Kristiansen VF, Nielsen KM, Brusetti L, Wright AD, Sundset MA.

Microb Ecol. 2010 Aug;60(2):320-30. doi: 10.1007/s00248-010-9690-x. Epub 2010 Jun 4.


Feasibility of removing surface deposits on stone using biological and chemical remediation methods.

Polo A, Cappitelli F, Brusetti L, Principi P, Villa F, Giacomucci L, Ranalli G, Sorlini C.

Microb Ecol. 2010 Jul;60(1):1-14. doi: 10.1007/s00248-009-9633-6. Epub 2010 Jan 30.


Bacterial diversity in faeces from polar bear (Ursus maritimus) in Arctic Svalbard.

Glad T, Bernhardsen P, Nielsen KM, Brusetti L, Andersen M, Aars J, Sundset MA.

BMC Microbiol. 2010 Jan 14;10:10. doi: 10.1186/1471-2180-10-10.


Biochemical profiles, restriction fragment length polymorphism (RFLP), random amplified polymorphic DNA (RAPD) and multilocus variable number tandem repeat analysis (MLVA) for typing Staphylococcus aureus isolated from dairy products.

Morandi S, Brasca M, Lodi R, Brusetti L, Andrighetto C, Lombardi A.

Res Vet Sci. 2010 Jun;88(3):427-35. doi: 10.1016/j.rvsc.2009.10.005. Epub 2009 Nov 18.


Esterase as an enzymatic signature of Geodermatophilaceae adaptability to Sahara desert stones and monuments.

Essoussi I, Ghodhbane-Gtari F, Amairi H, Sghaier H, Jaouani A, Brusetti L, Daffonchio D, Boudabous A, Gtari M.

J Appl Microbiol. 2010 May;108(5):1723-32. doi: 10.1111/j.1365-2672.2009.04580.x. Epub 2009 Oct 10.


Rock weathering creates oases of life in a high Arctic desert.

Borin S, Ventura S, Tambone F, Mapelli F, Schubotz F, Brusetti L, Scaglia B, D'Acqui LP, Solheim B, Turicchia S, Marasco R, Hinrichs KU, Baldi F, Adani F, Daffonchio D.

Environ Microbiol. 2010 Feb;12(2):293-303. doi: 10.1111/j.1462-2920.2009.02059.x. Epub 2009 Oct 16.


Endophytic bacterial diversity in grapevine (Vitis vinifera L.) leaves described by 16S rRNA gene sequence analysis and length heterogeneity-PCR.

Bulgari D, Casati P, Brusetti L, Quaglino F, Brasca M, Daffonchio D, Bianco PA.

J Microbiol. 2009 Aug;47(4):393-401. doi: 10.1007/s12275-009-0082-1. Epub 2009 Sep 9.


Sulfur cycling and methanogenesis primarily drive microbial colonization of the highly sulfidic Urania deep hypersaline basin.

Borin S, Brusetti L, Mapelli F, D'Auria G, Brusa T, Marzorati M, Rizzi A, Yakimov M, Marty D, De Lange GJ, Van der Wielen P, Bolhuis H, McGenity TJ, Polymenakou PN, Malinverno E, Giuliano L, Corselli C, Daffonchio D.

Proc Natl Acad Sci U S A. 2009 Jun 9;106(23):9151-6. doi: 10.1073/pnas.0811984106. Epub 2009 May 22.


Biodiversity of prokaryotic communities in sediments of different sub-basins of the Venice lagoon.

Borin S, Brusetti L, Daffonchio D, Delaney E, Baldi F.

Res Microbiol. 2009 Jun;160(5):307-14. doi: 10.1016/j.resmic.2009.04.005. Epub 2009 May 4.


Fluorescent-BOX-PCR for resolving bacterial genetic diversity, endemism and biogeography.

Brusetti L, Malkhazova I, Gtari M, Tamagnini I, Borin S, Merabishvili M, Chanishvili N, Mora D, Cappitelli F, Daffonchio D.

BMC Microbiol. 2008 Dec 15;8:220. doi: 10.1186/1471-2180-8-220.


Exploration of methods used to describe bacterial communities in silage of maize (Zea mays) cultivars.

Brusetti L, Borin S, Rizzi A, Mora D, Sorlini C, Daffonchio D.

Environ Biosafety Res. 2008 Jan-Mar;7(1):25-33. doi: 10.1051/ebr:2007047. Epub 2008 Apr 3.


Effects of rhizodeposition of non-transgenic and transplastomic tobaccos on the soil bacterial community.

Brusetti L, Rizzi A, Abruzzese A, Sacchi GA, Ragg E, Bazzicalupo M, Sorlini C, Daffonchio D.

Environ Biosafety Res. 2008 Jan-Mar;7(1):11-24. doi: 10.1051/ebr:2008002. Epub 2008 Apr 3.


Strategy for in situ detection of natural transformation-based horizontal gene transfer events.

Rizzi A, Pontiroli A, Brusetti L, Borin S, Sorlini C, Abruzzese A, Sacchi GA, Vogel TM, Simonet P, Bazzicalupo M, Nielsen KM, Monier JM, Daffonchio D.

Appl Environ Microbiol. 2008 Feb;74(4):1250-4. doi: 10.1128/AEM.02185-07. Epub 2007 Dec 28.


Bacteria of the genus Asaia stably associate with Anopheles stephensi, an Asian malarial mosquito vector.

Favia G, Ricci I, Damiani C, Raddadi N, Crotti E, Marzorati M, Rizzi A, Urso R, Brusetti L, Borin S, Mora D, Scuppa P, Pasqualini L, Clementi E, Genchi M, Corona S, Negri I, Grandi G, Alma A, Kramer L, Esposito F, Bandi C, Sacchi L, Daffonchio D.

Proc Natl Acad Sci U S A. 2007 May 22;104(21):9047-51. Epub 2007 May 14.


Synthetic consolidants attacked by melanin-producing fungi: case study of the biodeterioration of Milan (Italy) cathedral marble treated with acrylics.

Cappitelli F, Nosanchuk JD, Casadevall A, Toniolo L, Brusetti L, Florio S, Principi P, Borin S, Sorlini C.

Appl Environ Microbiol. 2007 Jan;73(1):271-7. Epub 2006 Oct 27.


Diversity of Bacillus anthracis strains in Georgia and of vaccine strains from the former Soviet Union.

Merabishvili M, Natidze M, Rigvava S, Brusetti L, Raddadi N, Borin S, Chanishvili N, Tediashvili M, Sharp R, Barbeschi M, Visca P, Daffonchio D.

Appl Environ Microbiol. 2006 Aug;72(8):5631-6.


Response of 1,2-dichloroethane-adapted microbial communities to ex-situ biostimulation of polluted groundwater.

Marzorati M, Borin S, Brusetti L, Daffonchio D, Marsilli C, Carpani G, de Ferra F.

Biodegradation. 2006 Mar;17(2):143-58. Epub 2005 Jul 23.


Usefulness of length heterogeneity-PCR for monitoring lactic acid bacteria succession during maize ensiling.

Brusetti L, Borin S, Mora D, Rizzi A, Raddadi N, Sorlini C, Daffonchio D.

FEMS Microbiol Ecol. 2006 Apr;56(1):154-64.


Stratified prokaryote network in the oxic-anoxic transition of a deep-sea halocline.

Daffonchio D, Borin S, Brusa T, Brusetti L, van der Wielen PW, Bolhuis H, Yakimov MM, D'Auria G, Giuliano L, Marty D, Tamburini C, McGenity TJ, Hallsworth JE, Sass AM, Timmis KN, Tselepides A, de Lange GJ, Hübner A, Thomson J, Varnavas SP, Gasparoni F, Gerber HW, Malinverno E, Corselli C, Garcin J, McKew B, Golyshin PN, Lampadariou N, Polymenakou P, Calore D, Cenedese S, Zanon F, Hoog S; Biodeep Scientific Party.

Nature. 2006 Mar 9;440(7081):203-7.


Microbial succession in a compost-packed biofilter treating benzene-contaminated air.

Borin S, Marzorati M, Brusetti L, Zilli M, Cherif H, Hassen A, Converti A, Sorlini C, Daffonchio D.

Biodegradation. 2006 Mar;17(2):181-91. Epub 2006 Feb 21.


A novel Bacteroidetes symbiont is localized in Scaphoideus titanus, the insect vector of Flavescence dorée in Vitis vinifera.

Marzorati M, Alma A, Sacchi L, Pajoro M, Palermo S, Brusetti L, Raddadi N, Balloi A, Tedeschi R, Clementi E, Corona S, Quaglino F, Bianco PA, Beninati T, Bandi C, Daffonchio D.

Appl Environ Microbiol. 2006 Feb;72(2):1467-75.


Strategy for identification of Bacillus cereus and Bacillus thuringiensis strains closely related to Bacillus anthracis.

Daffonchio D, Raddadi N, Merabishvili M, Cherif A, Carmagnola L, Brusetti L, Rizzi A, Chanishvili N, Visca P, Sharp R, Borin S.

Appl Environ Microbiol. 2006 Feb;72(2):1295-301.


The autolytic phenotype of the Bacillus cereus group.

Raddadi N, Cherif A, Mora D, Brusetti L, Borin S, Boudabous A, Daffonchio D.

J Appl Microbiol. 2005;99(5):1070-81.


Comparison of different primer sets for use in automated ribosomal intergenic spacer analysis of complex bacterial communities.

Cardinale M, Brusetti L, Quatrini P, Borin S, Puglia AM, Rizzi A, Zanardini E, Sorlini C, Corselli C, Daffonchio D.

Appl Environ Microbiol. 2004 Oct;70(10):6147-56.

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