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Items: 35

1.

Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction.

Del Prete S, Molitor A, Charif D, Bessoltane N, Soubigou-Taconnat L, Guichard C, Brunaud V, Granier F, Fransz P, Gaudin V.

BMC Plant Biol. 2019 Apr 11;19(1):135. doi: 10.1186/s12870-019-1738-6.

2.

Silicon supply affects the root transcriptome of Brassica napus L.

Haddad C, Trouverie J, Arkoun M, Yvin JC, Caïus J, Brunaud V, Laîné P, Etienne P.

Planta. 2019 May;249(5):1645-1651. doi: 10.1007/s00425-019-03120-7. Epub 2019 Feb 28.

PMID:
30820649
3.

Accuracy of RNAseq based SNP discovery and genotyping in Populusnigra.

Rogier O, Chateigner A, Amanzougarene S, Lesage-Descauses MC, Balzergue S, Brunaud V, Caius J, Soubigou-Taconnat L, Jorge V, Segura V.

BMC Genomics. 2018 Dec 12;19(1):909. doi: 10.1186/s12864-018-5239-z.

4.

Bioinformatic Analysis of Chloroplast Gene Expression and RNA Posttranscriptional Maturations Using RNA Sequencing.

Malbert B, Rigaill G, Brunaud V, Lurin C, Delannoy E.

Methods Mol Biol. 2018;1829:279-294. doi: 10.1007/978-1-4939-8654-5_19.

PMID:
29987729
5.

Transcriptome reprogramming due to the introduction of a barley telosome into bread wheat affects more barley genes than wheat.

Rey E, Abrouk M, Keeble-Gagnère G, Karafiátová M, Vrána J, Balzergue S, Soubigou-Taconnat L, Brunaud V, Martin-Magniette ML, Endo TR, Bartoš J; International Wheat Genome Sequencing Consortium (IWGSC), Appels R, Doležel J.

Plant Biotechnol J. 2018 Oct;16(10):1767-1777. doi: 10.1111/pbi.12913. Epub 2018 Apr 13.

6.

Combining laser-assisted microdissection (LAM) and RNA-seq allows to perform a comprehensive transcriptomic analysis of epidermal cells of Arabidopsis embryo.

Sakai K, Taconnat L, Borrega N, Yansouni J, Brunaud V, Paysant-Le Roux C, Delannoy E, Martin Magniette ML, Lepiniec L, Faure JD, Balzergue S, Dubreucq B.

Plant Methods. 2018 Feb 3;14:10. doi: 10.1186/s13007-018-0275-x. eCollection 2018.

7.

FLAGdb++: A Bioinformatic Environment to Study and Compare Plant Genomes.

Tamby JP, Brunaud V.

Methods Mol Biol. 2017;1533:79-101.

PMID:
27987165
8.

Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis.

Rigaill G, Balzergue S, Brunaud V, Blondet E, Rau A, Rogier O, Caius J, Maugis-Rabusseau C, Soubigou-Taconnat L, Aubourg S, Lurin C, Martin-Magniette ML, Delannoy E.

Brief Bioinform. 2018 Jan 1;19(1):65-76. doi: 10.1093/bib/bbw092.

PMID:
27742662
9.

Nod Factor Effects on Root Hair-Specific Transcriptome of Medicago truncatula: Focus on Plasma Membrane Transport Systems and Reactive Oxygen Species Networks.

Damiani I, Drain A, Guichard M, Balzergue S, Boscari A, Boyer JC, Brunaud V, Cottaz S, Rancurel C, Da Rocha M, Fizames C, Fort S, Gaillard I, Maillol V, Danchin EG, Rouached H, Samain E, Su YH, Thouin J, Touraine B, Puppo A, Frachisse JM, Pauly N, Sentenac H.

Front Plant Sci. 2016 Jun 7;7:794. doi: 10.3389/fpls.2016.00794. eCollection 2016.

10.

Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration.

Bueso E, Muñoz-Bertomeu J, Campos F, Martínez C, Tello C, Martínez-Almonacid I, Ballester P, Simón-Moya M, Brunaud V, Yenush L, Ferrándiz C, Serrano R.

Plant J. 2016 Sep;87(6):583-96. doi: 10.1111/tpj.13220. Epub 2016 Sep 7.

11.

A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation.

Liu Z, Boachon B, Lugan R, Tavares R, Erhardt M, Mutterer J, Demais V, Pateyron S, Brunaud V, Ohnishi T, Pencik A, Achard P, Gong F, Hedden P, Werck-Reichhart D, Renault H.

Mol Plant. 2015 Dec 7;8(12):1751-65. doi: 10.1016/j.molp.2015.09.002. Epub 2015 Sep 18.

12.

A fungal transcription factor gene is expressed in plants from its own promoter and improves drought tolerance.

Martínez F, Arif A, Nebauer SG, Bueso E, Ali R, Montesinos C, Brunaud V, Muñoz-Bertomeu J, Serrano R.

Planta. 2015 Jul;242(1):39-52. doi: 10.1007/s00425-015-2285-5. Epub 2015 Mar 26.

PMID:
25809153
13.

GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response.

Zaag R, Tamby JP, Guichard C, Tariq Z, Rigaill G, Delannoy E, Renou JP, Balzergue S, Mary-Huard T, Aubourg S, Martin-Magniette ML, Brunaud V.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1010-7. doi: 10.1093/nar/gku1155. Epub 2014 Nov 11.

14.

MYB118 represses endosperm maturation in seeds of Arabidopsis.

Barthole G, To A, Marchive C, Brunaud V, Soubigou-Taconnat L, Berger N, Dubreucq B, Lepiniec L, Baud S.

Plant Cell. 2014 Sep;26(9):3519-37. doi: 10.1105/tpc.114.130021. Epub 2014 Sep 5.

15.

The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana.

Lange H, Zuber H, Sement FM, Chicher J, Kuhn L, Hammann P, Brunaud V, Bérard C, Bouteiller N, Balzergue S, Aubourg S, Martin-Magniette ML, Vaucheret H, Gagliardi D.

PLoS Genet. 2014 Aug 21;10(8):e1004564. doi: 10.1371/journal.pgen.1004564. eCollection 2014 Aug.

16.

Functional analysis of Arabidopsis immune-related MAPKs uncovers a role for MPK3 as negative regulator of inducible defences.

Frei dit Frey N, Garcia AV, Bigeard J, Zaag R, Bueso E, Garmier M, Pateyron S, de Tauzia-Moreau ML, Brunaud V, Balzergue S, Colcombet J, Aubourg S, Martin-Magniette ML, Hirt H.

Genome Biol. 2014 Jun 30;15(6):R87. doi: 10.1186/gb-2014-15-6-r87.

17.

ARABIDOPSIS THALIANA HOMEOBOX25 uncovers a role for Gibberellins in seed longevity.

Bueso E, Muñoz-Bertomeu J, Campos F, Brunaud V, Martínez L, Sayas E, Ballester P, Yenush L, Serrano R.

Plant Physiol. 2014 Feb;164(2):999-1010. doi: 10.1104/pp.113.232223. Epub 2013 Dec 12.

18.

PT-Flax (phenotyping and TILLinG of flax): development of a flax (Linum usitatissimum L.) mutant population and TILLinG platform for forward and reverse genetics.

Chantreau M, Grec S, Gutierrez L, Dalmais M, Pineau C, Demailly H, Paysant-Leroux C, Tavernier R, Trouvé JP, Chatterjee M, Guillot X, Brunaud V, Chabbert B, van Wuytswinkel O, Bendahmane A, Thomasset B, Hawkins S.

BMC Plant Biol. 2013 Oct 15;13:159. doi: 10.1186/1471-2229-13-159.

19.

A TILLING Platform for Functional Genomics in Brachypodium distachyon.

Dalmais M, Antelme S, Ho-Yue-Kuang S, Wang Y, Darracq O, d'Yvoire MB, Cézard L, Légée F, Blondet E, Oria N, Troadec C, Brunaud V, Jouanin L, Höfte H, Bendahmane A, Lapierre C, Sibout R.

PLoS One. 2013 Jun 19;8(6):e65503. doi: 10.1371/journal.pone.0065503. Print 2013.

20.

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis.

Roudier F, Ahmed I, Bérard C, Sarazin A, Mary-Huard T, Cortijo S, Bouyer D, Caillieux E, Duvernois-Berthet E, Al-Shikhley L, Giraut L, Després B, Drevensek S, Barneche F, Dèrozier S, Brunaud V, Aubourg S, Schnittger A, Bowler C, Martin-Magniette ML, Robin S, Caboche M, Colot V.

EMBO J. 2011 May 18;30(10):1928-38. doi: 10.1038/emboj.2011.103. Epub 2011 Apr 12.

21.

Exploration of plant genomes in the FLAGdb++ environment.

Dèrozier S, Samson F, Tamby JP, Guichard C, Brunaud V, Grevet P, Gagnot S, Label P, Leplé JC, Lecharny A, Aubourg S.

Plant Methods. 2011 Mar 29;7:8. doi: 10.1186/1746-4811-7-8.

22.

Unsupervised classification for tiling arrays: ChIP-chip and transcriptome.

Bérard C, Martin-Magniette ML, Brunaud V, Aubourg S, Robin S.

Stat Appl Genet Mol Biol. 2011 Nov 1;10(1). pii: /j/sagmb.2011.10.issue-1/1544-6115.1692/1544-6115.1692.xml. doi: 10.2202/1544-6115.1692.

PMID:
23089815
23.

Improved detection of motifs with preferential location in promoters.

Bernard V, Lecharny A, Brunaud V.

Genome. 2010 Sep;53(9):739-52. doi: 10.1139/g10-042.

PMID:
20924423
24.

TC-motifs at the TATA-box expected position in plant genes: a novel class of motifs involved in the transcription regulation.

Bernard V, Brunaud V, Lecharny A.

BMC Genomics. 2010 Mar 12;11:166. doi: 10.1186/1471-2164-11-166.

25.

A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistance.

Moroldo M, Paillard S, Marconi R, Fabrice L, Canaguier A, Cruaud C, De Berardinis V, Guichard C, Brunaud V, Le Clainche I, Scalabrin S, Testolin R, Di Gaspero G, Morgante M, Adam-Blondon AF.

BMC Plant Biol. 2008 Jun 13;8:66. doi: 10.1186/1471-2229-8-66.

26.

UTILLdb, a Pisum sativum in silico forward and reverse genetics tool.

Dalmais M, Schmidt J, Le Signor C, Moussy F, Burstin J, Savois V, Aubert G, Brunaud V, de Oliveira Y, Guichard C, Thompson R, Bendahmane A.

Genome Biol. 2008;9(2):R43. doi: 10.1186/gb-2008-9-2-r43. Epub 2008 Feb 26.

27.

Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome.

Aubourg S, Martin-Magniette ML, Brunaud V, Taconnat L, Bitton F, Balzergue S, Jullien PE, Ingouff M, Thareau V, Schiex T, Lecharny A, Renou JP.

BMC Genomics. 2007 Nov 2;8:401.

28.

CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform.

Gagnot S, Tamby JP, Martin-Magniette ML, Bitton F, Taconnat L, Balzergue S, Aubourg S, Renou JP, Lecharny A, Brunaud V.

Nucleic Acids Res. 2008 Jan;36(Database issue):D986-90. Epub 2007 Oct 16.

29.

DEAD-box RNA helicases in Arabidopsis thaliana: establishing a link between quantitative expression, gene structure and evolution of a family of genes.

Mingam A, Toffano-Nioche C, Brunaud V, Boudet N, Kreis M, Lecharny A.

Plant Biotechnol J. 2004 Sep;2(5):401-15.

30.

GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts.

Aubourg S, Brunaud V, Bruyère C, Cock M, Cooke R, Cottet A, Couloux A, Déhais P, Deléage G, Duclert A, Echeverria M, Eschbach A, Falconet D, Filippi G, Gaspin C, Geourjon C, Grienenberger JM, Houlné G, Jamet E, Lechauve F, Leleu O, Leroy P, Mache R, Meyer C, Nedjari H, Negrutiu I, Orsini V, Peyretaillade E, Pommier C, Raes J, Risler JL, Rivière S, Rombauts S, Rouzé P, Schneider M, Schwob P, Small I, Soumayet-Kampetenga G, Stankovski D, Toffano C, Tognolli M, Caboche M, Lecharny A.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D641-6.

31.

FLAGdb++: a database for the functional analysis of the Arabidopsis genome.

Samson F, Brunaud V, Duchêne S, De Oliveira Y, Caboche M, Lecharny A, Aubourg S.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D347-50.

32.

T-DNA integration into the Arabidopsis genome depends on sequences of pre-insertion sites.

Brunaud V, Balzergue S, Dubreucq B, Aubourg S, Samson F, Chauvin S, Bechtold N, Cruaud C, DeRose R, Pelletier G, Lepiniec L, Caboche M, Lecharny A.

EMBO Rep. 2002 Dec;3(12):1152-7. Epub 2002 Nov 21.

33.

FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants.

Samson F, Brunaud V, Balzergue S, Dubreucq B, Lepiniec L, Pelletier G, Caboche M, Lecharny A.

Nucleic Acids Res. 2002 Jan 1;30(1):94-7.

34.

[Klippel-Trenaunay syndrome and ischemic neurologic complications].

Brunaud V, Delerue O, Muller JP, Destée A.

Rev Neurol (Paris). 1994;150(1):50-4. French.

PMID:
7801041
35.

[Cavernous angioma of the cervical spinal cord].

Cardon T, Wyremblewski P, Lesoin F, Brunaud V, Destée A.

Rev Neurol (Paris). 1992;148(2):152-4. Review. French.

PMID:
1604127

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