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Items: 1 to 50 of 76

1.

CD8+ T cells expand stem and progenitor cells in favorable but not adverse risk acute myeloid leukemia.

Radpour R, Riether C, Simillion C, Höpner S, Bruggmann R, Ochsenbein AF.

Leukemia. 2019 Mar 15. doi: 10.1038/s41375-019-0441-9. [Epub ahead of print]

PMID:
30877275
2.

Erratum: Author Correction: System immunology-based identification of blood transcriptional modules correlating to antibody responses in sheep.

Braun RO, Brunner L, Wyler K, Auray G, García-Nicolás O, Python S, Zumkehr B, Gaschen V, Stoffel MH, Collin N, Barnier-Quer C, Bruggmann R, Summerfield A.

NPJ Vaccines. 2019 Feb 19;4:10. doi: 10.1038/s41541-019-0100-1. eCollection 2019.

3.

Photorhabdus khanii subsp. guanajuatensis subsp. nov., isolated from Heterorhabditis atacamensis, and Photorhabdus luminescens subsp. mexicana subsp. nov., isolated from Heterorhabditis mexicana entomopathogenic nematodes.

Machado RAR, Bruno P, Arce CCM, Liechti N, Köhler A, Bernal J, Bruggmann R, Turlings TCJ.

Int J Syst Evol Microbiol. 2019 Mar;69(3):652-661. doi: 10.1099/ijsem.0.003154. Epub 2019 Jan 28.

PMID:
30688647
4.

Claudin-3-deficient C57BL/6J mice display intact brain barriers.

Castro Dias M, Coisne C, Lazarevic I, Baden P, Hata M, Iwamoto N, Francisco DMF, Vanlandewijck M, He L, Baier FA, Stroka D, Bruggmann R, Lyck R, Enzmann G, Deutsch U, Betsholtz C, Furuse M, Tsukita S, Engelhardt B.

Sci Rep. 2019 Jan 18;9(1):203. doi: 10.1038/s41598-018-36731-3.

5.

Determination of host proteins composing the microenvironment of coronavirus replicase complexes by proximity-labeling.

V'kovski P, Gerber M, Kelly J, Pfaender S, Ebert N, Braga Lagache S, Simillion C, Portmann J, Stalder H, Gaschen V, Bruggmann R, Stoffel MH, Heller M, Dijkman R, Thiel V.

Elife. 2019 Jan 11;8. pii: e42037. doi: 10.7554/eLife.42037.

6.

Tumor Initiation Capacity and Therapy Resistance Are Differential Features of EMT-Related Subpopulations in the NSCLC Cell Line A549.

Tièche CC, Gao Y, Bührer ED, Hobi N, Berezowska SA, Wyler K, Froment L, Weis S, Peng RW, Bruggmann R, Schär P, Amrein MA, Hall SRR, Dorn P, Kocher G, Riether C, Ochsenbein A, Schmid RA, Marti TM.

Neoplasia. 2019 Feb;21(2):185-196. doi: 10.1016/j.neo.2018.09.008. Epub 2018 Dec 27.

7.

Precise Delineation and Transcriptional Characterization of Bovine Blood Dendritic-Cell and Monocyte Subsets.

Talker SC, Baumann A, Barut GT, Keller I, Bruggmann R, Summerfield A.

Front Immunol. 2018 Oct 30;9:2505. doi: 10.3389/fimmu.2018.02505. eCollection 2018.

8.

Limited Correlation of Shotgun Metagenomics Following Host Depletion and Routine Diagnostics for Viruses and Bacteria in Low Concentrated Surrogate and Clinical Samples.

Oechslin CP, Lenz N, Liechti N, Ryter S, Agyeman P, Bruggmann R, Leib SL, Beuret CM.

Front Cell Infect Microbiol. 2018 Oct 23;8:375. doi: 10.3389/fcimb.2018.00375. eCollection 2018.

9.

Conversion of Methionine to Cysteine in Lactobacillus paracasei Depends on the Highly Mobile cysK-ctl-cysE Gene Cluster.

Wüthrich D, Irmler S, Berthoud H, Guggenbühl B, Eugster E, Bruggmann R.

Front Microbiol. 2018 Oct 17;9:2415. doi: 10.3389/fmicb.2018.02415. eCollection 2018.

10.

TIRAP p.R81C is a novel lymphoma risk variant which enhances cell proliferation via NF-κB mediated signaling in B-cells.

Burkhard R, Keller I, Arambasic M, Juskevicius D, Tzankov A, Lundberg P, Bruggmann R, Dirnhofer S, Radpour R, Novak U.

Haematologica. 2019 Apr;104(4):766-777. doi: 10.3324/haematol.2018.201590. Epub 2018 Oct 31.

11.

Contribution of epigenetic variation to adaptation in Arabidopsis.

Schmid MW, Heichinger C, Coman Schmid D, Guthörl D, Gagliardini V, Bruggmann R, Aluri S, Aquino C, Schmid B, Turnbull LA, Grossniklaus U.

Nat Commun. 2018 Oct 25;9(1):4446. doi: 10.1038/s41467-018-06932-5.

12.

System immunology-based identification of blood transcriptional modules correlating to antibody responses in sheep.

Braun RO, Brunner L, Wyler K, Auray G, García-Nicolás O, Python S, Zumkehr B, Gaschen V, Stoffel MH, Collin N, Barnier-Quer C, Bruggmann R, Summerfield A.

NPJ Vaccines. 2018 Oct 3;3:41. doi: 10.1038/s41541-018-0078-0. eCollection 2018. Erratum in: NPJ Vaccines. 2019 Feb 19;4:10.

13.

Gene expression in chronic granulomatous disease and interferon-γ receptor-deficient cells treated in vitro with interferon-γ.

Frazão JB, Colombo M, Simillion C, Bilican A, Keller I, Wüthrich D, Zhu Z, Okoniewski MJ, Bruggmann R, Condino-Neto A, Newburger PE.

J Cell Biochem. 2019 Mar;120(3):4321-4332. doi: 10.1002/jcb.27718. Epub 2018 Sep 27.

PMID:
30260027
14.

The genome of Naegleria lovaniensis, the basis for a comparative approach to unravel pathogenicity factors of the human pathogenic amoeba N. fowleri.

Liechti N, Schürch N, Bruggmann R, Wittwer M.

BMC Genomics. 2018 Sep 5;19(1):654. doi: 10.1186/s12864-018-4994-1.

15.

Update on Tetracycline Susceptibility of Pediococcus acidilactici Based on Strains Isolated from Swiss Cheese and Whey.

Lüdin P, Roetschi A, Wüthrich D, Bruggmann R, Berthoud H, Shani N.

J Food Prot. 2018 Oct;81(10):1582-1589. doi: 10.4315/0362-028X.JFP-18-160.

PMID:
30169118
16.

Xenacoelomorpha Survey Reveals That All 11 Animal Homeobox Gene Classes Were Present in the First Bilaterians.

Brauchle M, Bilican A, Eyer C, Bailly X, Martínez P, Ladurner P, Bruggmann R, Sprecher SG.

Genome Biol Evol. 2018 Sep 1;10(9):2205-2217. doi: 10.1093/gbe/evy170.

17.

Transcriptional Regulation of Cysteine and Methionine Metabolism in Lactobacillus paracasei FAM18149.

Wüthrich D, Wenzel C, Bavan T, Bruggmann R, Berthoud H, Irmler S.

Front Microbiol. 2018 Jun 11;9:1261. doi: 10.3389/fmicb.2018.01261. eCollection 2018.

18.

Regulators of Long-Term Memory Revealed by Mushroom Body-Specific Gene Expression Profiling in Drosophila melanogaster.

Widmer YF, Bilican A, Bruggmann R, Sprecher SG.

Genetics. 2018 Aug;209(4):1167-1181. doi: 10.1534/genetics.118.301106. Epub 2018 Jun 20.

19.

Increased sensitivity to apoptosis upon endoplasmic reticulum stress-induced activation of the unfolded protein response in chemotherapy-resistant malignant pleural mesothelioma.

Xu D, Liang SQ, Yang H, Lüthi U, Riether C, Berezowska S, Marti TM, Hall SRR, Bruggmann R, Kocher GJ, Schmid RA, Peng RW.

Br J Cancer. 2018 Jul;119(1):65-75. doi: 10.1038/s41416-018-0145-3. Epub 2018 Jun 20.

PMID:
29921948
20.

Tumor Necrosis Factor-α Initiates miRNA-mRNA Signaling Cascades in Obstruction-Induced Bladder Dysfunction.

Koeck I, Hashemi Gheinani A, Baumgartner U, Vassella E, Bruggmann R, Burkhard FC, Monastyrskaya K.

Am J Pathol. 2018 Aug;188(8):1847-1864. doi: 10.1016/j.ajpath.2018.05.008. Epub 2018 Jun 18.

PMID:
29920227
21.

Whole-genome-based revisit of Photorhabdus phylogeny: proposal for the elevation of most Photorhabdus subspecies to the species level and description of one novel species Photorhabdus bodei sp. nov., and one novel subspecies Photorhabdus laumondii subsp. clarkei subsp. nov.

Machado RAR, Wüthrich D, Kuhnert P, Arce CCM, Thönen L, Ruiz C, Zhang X, Robert CAM, Karimi J, Kamali S, Ma J, Bruggmann R, Erb M.

Int J Syst Evol Microbiol. 2018 Aug;68(8):2664-2681. doi: 10.1099/ijsem.0.002820. Epub 2018 Jun 7.

PMID:
29877789
22.

The ESRP1-GPR137 axis contributes to intestinal pathogenesis.

Mager LF, Koelzer VH, Stuber R, Thoo L, Keller I, Koeck I, Langenegger M, Simillion C, Pfister SP, Faderl M, Genitsch V, Tcymbarevich I, Juillerat P, Li X, Xia Y, Karamitopoulou E, Lyck R, Zlobec I, Hapfelmeier S, Bruggmann R, McCoy KD, Macpherson AJ, Müller C, Beutler B, Krebs P.

Elife. 2017 Oct 4;6. pii: e28366. doi: 10.7554/eLife.28366.

23.

Need for speed in accurate whole-genome data analysis: GENALICE MAP challenges BWA/GATK more than PEMapper/PECaller and Isaac.

Plüss M, Kopps AM, Keller I, Meienberg J, Caspar SM, Dubacher N, Bruggmann R, Vogel M, Matyas G.

Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):E8320-E8322. doi: 10.1073/pnas.1713830114. Epub 2017 Sep 15. No abstract available.

24.

Neuropathological survey reveals underestimation of the prevalence of neuroinfectious diseases in cattle in Switzerland.

Truchet L, Walland J, Wüthrich D, Boujon CL, Posthaus H, Bruggmann R, Schüpbach-Regula G, Oevermann A, Seuberlich T.

Vet Microbiol. 2017 Sep;208:137-145. doi: 10.1016/j.vetmic.2017.07.027. Epub 2017 Jul 29.

PMID:
28888628
25.

Accumulation of Deleterious Mutations During Bacterial Range Expansions.

Bosshard L, Dupanloup I, Tenaillon O, Bruggmann R, Ackermann M, Peischl S, Excoffier L.

Genetics. 2017 Oct;207(2):669-684. doi: 10.1534/genetics.117.300144. Epub 2017 Aug 16.

26.

Indication of Cross-Species Transmission of Astrovirus Associated with Encephalitis in Sheep and Cattle.

Boujon CL, Koch MC, Wüthrich D, Werder S, Jakupovic D, Bruggmann R, Seuberlich T.

Emerg Infect Dis. 2017 Sep;23(9):1604-1608. doi: 10.3201/eid2309.170168.

27.

Amplicon Sequencing of the slpH Locus Permits Culture-Independent Strain Typing of Lactobacillus helveticus in Dairy Products.

Moser A, Wüthrich D, Bruggmann R, Eugster-Meier E, Meile L, Irmler S.

Front Microbiol. 2017 Jul 20;8:1380. doi: 10.3389/fmicb.2017.01380. eCollection 2017.

28.

Cbp80 is needed for the expression of piRNA components and piRNAs.

Rashpa R, Vazquez-Pianzola P, Colombo M, Hernandez G, Beuchle D, Berger F, Peischl S, Bruggmann R, Suter B.

PLoS One. 2017 Jul 26;12(7):e0181743. doi: 10.1371/journal.pone.0181743. eCollection 2017.

29.

A structural variant in the 5'-flanking region of the TWIST2 gene affects melanocyte development in belted cattle.

Awasthi Mishra N, Drögemüller C, Jagannathan V, Keller I, Wüthrich D, Bruggmann R, Beck J, Schütz E, Brenig B, Demmel S, Moser S, Signer-Hasler H, Pieńkowska-Schelling A, Schelling C, Sande M, Rongen R, Rieder S, Kelsh RN, Mercader N, Leeb T.

PLoS One. 2017 Jun 28;12(6):e0180170. doi: 10.1371/journal.pone.0180170. eCollection 2017.

30.

The Histidine Decarboxylase Gene Cluster of Lactobacillus parabuchneri Was Gained by Horizontal Gene Transfer and Is Mobile within the Species.

Wüthrich D, Berthoud H, Wechsler D, Eugster E, Irmler S, Bruggmann R.

Front Microbiol. 2017 Feb 17;8:218. doi: 10.3389/fmicb.2017.00218. eCollection 2017.

31.

Avoiding the pitfalls of gene set enrichment analysis with SetRank.

Simillion C, Liechti R, Lischer HE, Ioannidis V, Bruggmann R.

BMC Bioinformatics. 2017 Mar 4;18(1):151. doi: 10.1186/s12859-017-1571-6.

32.

Characterization of miRNA-regulated networks, hubs of signaling, and biomarkers in obstruction-induced bladder dysfunction.

Gheinani AH, Kiss B, Moltzahn F, Keller I, Bruggmann R, Rehrauer H, Fournier CA, Burkhard FC, Monastyrskaya K.

JCI Insight. 2017 Jan 26;2(2):e89560. doi: 10.1172/jci.insight.89560.

33.

Biallelic Mutations in DNAJC12 Cause Hyperphenylalaninemia, Dystonia, and Intellectual Disability.

Anikster Y, Haack TB, Vilboux T, Pode-Shakked B, Thöny B, Shen N, Guarani V, Meissner T, Mayatepek E, Trefz FK, Marek-Yagel D, Martinez A, Huttlin EL, Paulo JA, Berutti R, Benoist JF, Imbard A, Dorboz I, Heimer G, Landau Y, Ziv-Strasser L, Malicdan MCV, Gemperle-Britschgi C, Cremer K, Engels H, Meili D, Keller I, Bruggmann R, Strom TM, Meitinger T, Mullikin JC, Schwartz G, Ben-Zeev B, Gahl WA, Harper JW, Blau N, Hoffmann GF, Prokisch H, Opladen T, Schiff M.

Am J Hum Genet. 2017 Feb 2;100(2):257-266. doi: 10.1016/j.ajhg.2017.01.002. Epub 2017 Jan 26.

34.

Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles.

Schlegel M, Münsterkötter M, Güldener U, Bruggmann R, Duò A, Hainaut M, Henrissat B, Sieber CM, Hoffmeister D, Grünig CR.

BMC Genomics. 2016 Dec 9;17(1):1015.

35.

Transcriptome-wide identification of NMD-targeted human mRNAs reveals extensive redundancy between SMG6- and SMG7-mediated degradation pathways.

Colombo M, Karousis ED, Bourquin J, Bruggmann R, Mühlemann O.

RNA. 2017 Feb;23(2):189-201. doi: 10.1261/rna.059055.116. Epub 2016 Nov 18.

36.

Characterization and Transcriptomic Analysis of Porcine Blood Conventional and Plasmacytoid Dendritic Cells Reveals Striking Species-Specific Differences.

Auray G, Keller I, Python S, Gerber M, Bruggmann R, Ruggli N, Summerfield A.

J Immunol. 2016 Dec 15;197(12):4791-4806. Epub 2016 Nov 11.

37.

The mRNA transportome of the BicD/Egl transport machinery.

Vazquez-Pianzola P, Schaller B, Colombo M, Beuchle D, Neuenschwander S, Marcil A, Bruggmann R, Suter B.

RNA Biol. 2017 Jan 2;14(1):73-89. doi: 10.1080/15476286.2016.1251542. Epub 2016 Nov 1.

38.

Maize Cytolines Unmask Key Nuclear Genes That Are under the Control of Retrograde Signaling Pathways in Plants.

Miclaus M, Balacescu O, Has I, Balacescu L, Has V, Suteu D, Neuenschwander S, Keller I, Bruggmann R.

Genome Biol Evol. 2016 Nov 17;8(11):3256-3270.

39.

Full-genome based molecular characterization of encephalitis-associated bovine astroviruses.

Bouzalas IG, Wüthrich D, Selimovic-Hamza S, Drögemüller C, Bruggmann R, Seuberlich T.

Infect Genet Evol. 2016 Oct;44:162-168. doi: 10.1016/j.meegid.2016.06.052. Epub 2016 Jul 1.

40.

Genomic approach to studying nutritional requirements of Clostridium tyrobutyricum and other Clostridia causing late blowing defects.

Storari M, Kulli S, Wüthrich D, Bruggmann R, Berthoud H, Arias-Roth E.

Food Microbiol. 2016 Oct;59:213-23. doi: 10.1016/j.fm.2016.05.013. Epub 2016 May 26.

41.

Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida.

Bombarely A, Moser M, Amrad A, Bao M, Bapaume L, Barry CS, Bliek M, Boersma MR, Borghi L, Bruggmann R, Bucher M, D'Agostino N, Davies K, Druege U, Dudareva N, Egea-Cortines M, Delledonne M, Fernandez-Pozo N, Franken P, Grandont L, Heslop-Harrison JS, Hintzsche J, Johns M, Koes R, Lv X, Lyons E, Malla D, Martinoia E, Mattson NS, Morel P, Mueller LA, Muhlemann J, Nouri E, Passeri V, Pezzotti M, Qi Q, Reinhardt D, Rich M, Richert-Pöggeler KR, Robbins TP, Schatz MC, Schranz ME, Schuurink RC, Schwarzacher T, Spelt K, Tang H, Urbanus SL, Vandenbussche M, Vijverberg K, Villarino GH, Warner RM, Weiss J, Yue Z, Zethof J, Quattrocchio F, Sims TL, Kuhlemeier C.

Nat Plants. 2016 May 27;2(6):16074. doi: 10.1038/nplants.2016.74.

42.

Minor intron splicing is regulated by FUS and affected by ALS-associated FUS mutants.

Reber S, Stettler J, Filosa G, Colombo M, Jutzi D, Lenzken SC, Schweingruber C, Bruggmann R, Bachi A, Barabino SM, Mühlemann O, Ruepp MD.

EMBO J. 2016 Jul 15;35(14):1504-21. doi: 10.15252/embj.201593791. Epub 2016 Jun 1.

43.

Exploring the virome of cattle with non-suppurative encephalitis of unknown etiology by metagenomics.

Wüthrich D, Boujon CL, Truchet L, Selimovic-Hamza S, Oevermann A, Bouzalas IG, Bruggmann R, Seuberlich T.

Virology. 2016 Jun;493:22-30. doi: 10.1016/j.virol.2016.03.009. Epub 2016 Mar 18.

44.

Erratum: Multimodal stimulus coding by a gustatory sensory neuron in Drosophila larvae.

van Giesen L, Hernandez-Nunez L, Delasoie-Baranek S, Colombo M, Renaud P, Bruggmann R, Benton R, Samuel AD, Sprecher SG.

Nat Commun. 2016 Mar 14;7:11028. doi: 10.1038/ncomms11028. No abstract available.

45.

A Broad RNA Virus Survey Reveals Both miRNA Dependence and Functional Sequestration.

Scheel TK, Luna JM, Liniger M, Nishiuchi E, Rozen-Gagnon K, Shlomai A, Auray G, Gerber M, Fak J, Keller I, Bruggmann R, Darnell RB, Ruggli N, Rice CM.

Cell Host Microbe. 2016 Mar 9;19(3):409-23. doi: 10.1016/j.chom.2016.02.007.

46.

Multimodal stimulus coding by a gustatory sensory neuron in Drosophila larvae.

van Giesen L, Hernandez-Nunez L, Delasoie-Baranek S, Colombo M, Renaud P, Bruggmann R, Benton R, Samuel ADT, Sprecher SG.

Nat Commun. 2016 Feb 11;7:10687. doi: 10.1038/ncomms10687. Erratum in: Nat Commun. 2016;7:11028.

47.

Identification of a second encephalitis-associated astrovirus in cattle.

Seuberlich T, Wüthrich D, Selimovic-Hamza S, Drögemüller C, Oevermann A, Bruggmann R, Bouzalas I.

Emerg Microbes Infect. 2016 Jan 20;5:e71. doi: 10.1038/emi.2017.56. No abstract available.

48.

Clinical sequencing: is WGS the better WES?

Meienberg J, Bruggmann R, Oexle K, Matyas G.

Hum Genet. 2016 Mar;135(3):359-62. doi: 10.1007/s00439-015-1631-9. Epub 2016 Jan 7.

49.

New insights into the performance of human whole-exome capture platforms.

Meienberg J, Zerjavic K, Keller I, Okoniewski M, Patrignani A, Ludin K, Xu Z, Steinmann B, Carrel T, Röthlisberger B, Schlapbach R, Bruggmann R, Matyas G.

Nucleic Acids Res. 2015 Jun 23;43(11):e76. doi: 10.1093/nar/gkv216. Epub 2015 Mar 27.

50.

Draft Genome Sequences of Clostridium tyrobutyricum Strains FAM22552 and FAM22553, Isolated from Swiss Semihard Red-Smear Cheese.

Storari M, Wüthrich D, Bruggmann R, Berthoud H, Arias-Roth E.

Genome Announc. 2015 Mar 12;3(2). pii: e00078-15. doi: 10.1128/genomeA.00078-15.

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