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Items: 1 to 50 of 162

1.

Inferring fine-scale spatial structure of the brown bear (Ursus arctos) population in the Carpathians prior to infrastructure development.

Fedorca A, Russo IM, Ionescu O, Ionescu G, Popa M, Fedorca M, Curtu AL, Sofletea N, Tabor GM, Bruford MW.

Sci Rep. 2019 Jul 1;9(1):9494. doi: 10.1038/s41598-019-45999-y.

2.

Rapid identification and interpretation of gene-environment associations using the new R.SamBada landscape genomics pipeline.

Duruz S, Sevane N, Selmoni O, Vajana E, Leempoel K, Stucki S, Orozco-terWengel P, Rochat E, Dunner S; NEXTGEN Consortium; CLIMGEN Consortium, Bruford MW, Joost S.

Mol Ecol Resour. 2019 May 28. doi: 10.1111/1755-0998.13044. [Epub ahead of print]

PMID:
31136078
3.

Rapid ecological specialization despite constant population sizes.

Rakotoarivelo AR, O'Donoghue P, Bruford MW, Moodley Y.

PeerJ. 2019 Apr 19;7:e6476. doi: 10.7717/peerj.6476. eCollection 2019.

4.

Genomic selection strategies for breeding adaptation and production in dairy cattle under climate change.

Strandén I, Kantanen J, Russo IM, Orozco-terWengel P, Bruford MW; Climgen Consortium.

Heredity (Edinb). 2019 Sep;123(3):307-317. doi: 10.1038/s41437-019-0207-1. Epub 2019 Mar 18.

PMID:
30886391
5.

Domestication of cattle: Two or three events?

Pitt D, Sevane N, Nicolazzi EL, MacHugh DE, Park SDE, Colli L, Martinez R, Bruford MW, Orozco-terWengel P.

Evol Appl. 2018 Jul 23;12(1):123-136. doi: 10.1111/eva.12674. eCollection 2019 Jan.

6.

Demography and rapid local adaptation shape Creole cattle genome diversity in the tropics.

Pitt D, Bruford MW, Barbato M, Orozco-terWengel P, Martínez R, Sevane N.

Evol Appl. 2018 May 18;12(1):105-122. doi: 10.1111/eva.12641. eCollection 2019 Jan.

7.

The genomics of domestication special issue editorial.

Kantar MB, Bruford MW, Rieseberg LH.

Evol Appl. 2018 Sep 17;12(1):3-5. doi: 10.1111/eva.12693. eCollection 2019 Jan.

8.

Genome-wide differential DNA methylation in tropically adapted Creole cattle and their Iberian ancestors.

Sevane N, Martínez R, Bruford MW.

Anim Genet. 2019 Feb;50(1):15-26. doi: 10.1111/age.12731. Epub 2018 Nov 22.

PMID:
30565712
9.

The hidden costs of living in a transformed habitat: Ecological and evolutionary consequences in a tripartite mutualistic system with a keystone mistletoe.

Fontúrbel FE, Bruford MW, Salazar DA, Cortés-Miranda J, Vega-Retter C.

Sci Total Environ. 2019 Feb 15;651(Pt 2):2740-2748. doi: 10.1016/j.scitotenv.2018.10.125. Epub 2018 Oct 10.

PMID:
30463128
10.

Walking in a heterogeneous landscape: Dispersal, gene flow and conservation implications for the giant panda in the Qinling Mountains.

Ma T, Hu Y, Russo IM, Nie Y, Yang T, Xiong L, Ma S, Meng T, Han H, Zhang X, Bruford MW, Wei F.

Evol Appl. 2018 Aug 31;11(10):1859-1872. doi: 10.1111/eva.12686. eCollection 2018 Dec.

11.

Contrasting evolutionary history, anthropogenic declines and genetic contact in the northern and southern white rhinoceros (Ceratotherium simum).

Moodley Y, Russo IM, Robovský J, Dalton DL, Kotzé A, Smith S, Stejskal J, Ryder OA, Hermes R, Walzer C, Bruford MW.

Proc Biol Sci. 2018 Nov 7;285(1890). pii: 20181567. doi: 10.1098/rspb.2018.1567.

PMID:
30404873
12.

Correction: Disrupted dispersal and its genetic consequences: Comparing protected and threatened baboon populations (Papio papio) in West Africa.

Ferreira da Silva MJ, Kopp GH, Casanova C, Godinho R, Minhós T, Sá R, Zinner D, Bruford MW.

PLoS One. 2018 Oct 1;13(10):e0205302. doi: 10.1371/journal.pone.0205302. eCollection 2018.

13.

Population genomics of wild Chinese rhesus macaques reveals a dynamic demographic history and local adaptation, with implications for biomedical research.

Liu Z, Tan X, Orozco-terWengel P, Zhou X, Zhang L, Tian S, Yan Z, Xu H, Ren B, Zhang P, Xiang Z, Sun B, Roos C, Bruford MW, Li M.

Gigascience. 2018 Sep 1;7(9). doi: 10.1093/gigascience/giy106.

14.

Comparing genetic diversity and demographic history in co-distributed wild South American camelids.

Casey CS, Orozco-terWengel P, Yaya K, Kadwell M, Fernández M, Marín JC, Rosadio R, Maturrano L, Hoces D, Hu Y, Wheeler JC, Bruford MW.

Heredity (Edinb). 2018 Oct;121(4):387-400. doi: 10.1038/s41437-018-0120-z. Epub 2018 Jul 30.

PMID:
30061581
15.

Genetic and genomic monitoring with minimally invasive sampling methods.

Carroll EL, Bruford MW, DeWoody JA, Leroy G, Strand A, Waits L, Wang J.

Evol Appl. 2018 Mar 24;11(7):1094-1119. doi: 10.1111/eva.12600. eCollection 2018 Aug.

16.

Next-generation metrics for monitoring genetic erosion within populations of conservation concern.

Leroy G, Carroll EL, Bruford MW, DeWoody JA, Strand A, Waits L, Wang J.

Evol Appl. 2017 Nov 22;11(7):1066-1083. doi: 10.1111/eva.12564. eCollection 2018 Aug. Review.

17.

Next-generation conservation genetics and biodiversity monitoring.

Hunter ME, Hoban SM, Bruford MW, Segelbacher G, Bernatchez L.

Evol Appl. 2018 Jul 17;11(7):1029-1034. doi: 10.1111/eva.12661. eCollection 2018 Aug.

18.

Orangutans venture out of the rainforest and into the Anthropocene.

Spehar SN, Sheil D, Harrison T, Louys J, Ancrenaz M, Marshall AJ, Wich SA, Bruford MW, Meijaard E.

Sci Adv. 2018 Jun 27;4(6):e1701422. doi: 10.1126/sciadv.1701422. eCollection 2018 Jun. Review.

19.

Contrasting Patterns of Genomic Diversity Reveal Accelerated Genetic Drift but Reduced Directional Selection on X-Chromosome in Wild and Domestic Sheep Species.

Chen ZH, Zhang M, Lv FH, Ren X, Li WR, Liu MJ, Nam K, Bruford MW, Li MH.

Genome Biol Evol. 2018 Apr 1;10(5):1282-1297. doi: 10.1093/gbe/evy085.

20.

Disrupted dispersal and its genetic consequences: Comparing protected and threatened baboon populations (Papio papio) in West Africa.

Ferreira da Silva MJ, Kopp GH, Casanova C, Godinho R, Minhós T, Sá R, Zinner D, Bruford MW.

PLoS One. 2018 Apr 3;13(4):e0194189. doi: 10.1371/journal.pone.0194189. eCollection 2018. Erratum in: PLoS One. 2018 Oct 1;13(10):e0205302.

21.

Convergent genomic signatures of domestication in sheep and goats.

Alberto FJ, Boyer F, Orozco-terWengel P, Streeter I, Servin B, de Villemereuil P, Benjelloun B, Librado P, Biscarini F, Colli L, Barbato M, Zamani W, Alberti A, Engelen S, Stella A, Joost S, Ajmone-Marsan P, Negrini R, Orlando L, Rezaei HR, Naderi S, Clarke L, Flicek P, Wincker P, Coissac E, Kijas J, Tosser-Klopp G, Chikhi A, Bruford MW, Taberlet P, Pompanon F.

Nat Commun. 2018 Mar 6;9(1):813. doi: 10.1038/s41467-018-03206-y.

22.

Transcription-Associated Mutation Promotes RNA Complexity in Highly Expressed Genes-A Major New Source of Selectable Variation.

Pan S, Bruford MW, Wang Y, Lin Z, Gu Z, Hou X, Deng X, Dixon A, Graves JAM, Zhan X.

Mol Biol Evol. 2018 May 1;35(5):1104-1119. doi: 10.1093/molbev/msy017.

23.

Genetic analyses favour an ancient and natural origin of elephants on Borneo.

Sharma R, Goossens B, Heller R, Rasteiro R, Othman N, Bruford MW, Chikhi L.

Sci Rep. 2018 Jan 17;8(1):880. doi: 10.1038/s41598-017-17042-5.

24.

Odour dialects among wild mammals.

Kean EF, Bruford MW, Russo IM, Müller CT, Chadwick EA.

Sci Rep. 2017 Oct 19;7(1):13593. doi: 10.1038/s41598-017-12706-8.

25.

Genomic signatures of adaptive introgression from European mouflon into domestic sheep.

Barbato M, Hailer F, Orozco-terWengel P, Kijas J, Mereu P, Cabras P, Mazza R, Pirastru M, Bruford MW.

Sci Rep. 2017 Aug 8;7(1):7623. doi: 10.1038/s41598-017-07382-7.

26.

Population transcriptomes reveal synergistic responses of DNA polymorphism and RNA expression to extreme environments on the Qinghai-Tibetan Plateau in a predatory bird.

Pan S, Zhang T, Rong Z, Hu L, Gu Z, Wu Q, Dong S, Liu Q, Lin Z, Deutschova L, Li X, Dixon A, Bruford MW, Zhan X.

Mol Ecol. 2017 Jun;26(11):2993-3010. doi: 10.1111/mec.14090. Epub 2017 Apr 1.

PMID:
28277617
27.

Polygamy slows down population divergence in shorebirds.

D'Urban Jackson J, Dos Remedios N, Maher KH, Zefania S, Haig S, Oyler-McCance S, Blomqvist D, Burke T, Bruford MW, Székely T, Küpper C.

Evolution. 2017 May;71(5):1313-1326. doi: 10.1111/evo.13212. Epub 2017 Apr 10.

28.

Extinctions, genetic erosion and conservation options for the black rhinoceros (Diceros bicornis).

Moodley Y, Russo IM, Dalton DL, Kotzé A, Muya S, Haubensak P, Bálint B, Munimanda GK, Deimel C, Setzer A, Dicks K, Herzig-Straschil B, Kalthoff DC, Siegismund HR, Robovský J, O'Donoghue P, Bruford MW.

Sci Rep. 2017 Feb 8;7:41417. doi: 10.1038/srep41417.

29.

Corrigendum: Dynamics and genetics of a disease-driven species decline to near extinction: lessons for conservation.

Hudson MA, Young RP, Jackson JD, Orozco-terWengel P, Martin L, James A, Sulton M, Garcia G, Griffiths RA, Thomas R, Magin C, Bruford MW, Cunningham AA.

Sci Rep. 2017 Jan 11;7:40110. doi: 10.1038/srep40110. No abstract available.

30.

Quantitative evaluation of hybridization and the impact on biodiversity conservation.

van Wyk AM, Dalton DL, Hoban S, Bruford MW, Russo IM, Birss C, Grobler P, van Vuuren BJ, Kotzé A.

Ecol Evol. 2016 Dec 20;7(1):320-330. doi: 10.1002/ece3.2595. eCollection 2017 Jan.

31.

High performance computation of landscape genomic models including local indicators of spatial association.

Stucki S, Orozco-terWengel P, Forester BR, Duruz S, Colli L, Masembe C, Negrini R, Landguth E, Jones MR; NEXTGEN Consortium, Bruford MW, Taberlet P, Joost S.

Mol Ecol Resour. 2017 Sep;17(5):1072-1089. doi: 10.1111/1755-0998.12629. Epub 2016 Nov 28.

PMID:
27801969
32.

Population Genomics Reveals Low Genetic Diversity and Adaptation to Hypoxia in Snub-Nosed Monkeys.

Zhou X, Meng X, Liu Z, Chang J, Wang B, Li M, Wengel PO, Tian S, Wen C, Wang Z, Garber PA, Pan H, Ye X, Xiang Z, Bruford MW, Edwards SV, Cao Y, Yu S, Gao L, Cao Z, Liu G, Ren B, Shi F, Peterfi Z, Li D, Li B, Jiang Z, Li J, Gladyshev VN, Li R, Li M.

Mol Biol Evol. 2016 Oct;33(10):2670-81. doi: 10.1093/molbev/msw150. Epub 2016 Aug 23.

PMID:
27555581
33.

Dynamics and genetics of a disease-driven species decline to near extinction: lessons for conservation.

Hudson MA, Young RP, D'Urban Jackson J, Orozco-terWengel P, Martin L, James A, Sulton M, Garcia G, Griffiths RA, Thomas R, Magin C, Bruford MW, Cunningham AA.

Sci Rep. 2016 Aug 3;6:30772. doi: 10.1038/srep30772. Erratum in: Sci Rep. 2017 Jan 11;7:40110.

34.

Landscape determinants of fine-scale genetic structure of a small rodent in a heterogeneous landscape (Hluhluwe-iMfolozi Park, South Africa).

Russo IR, Sole CL, Barbato M, von Bramann U, Bruford MW.

Sci Rep. 2016 Jul 13;6:29168. doi: 10.1038/srep29168.

35.

Colonization of the Scottish islands via long-distance Neolithic transport of red deer (Cervus elaphus).

Stanton DW, Mulville JA, Bruford MW.

Proc Biol Sci. 2016 Apr 13;283(1828). pii: 20160095. doi: 10.1098/rspb.2016.0095.

36.

Assessing Genetic Structure in Common but Ecologically Distinct Carnivores: The Stone Marten and Red Fox.

Basto MP, Santos-Reis M, Simões L, Grilo C, Cardoso L, Cortes H, Bruford MW, Fernandes C.

PLoS One. 2016 Jan 4;11(1):e0145165. doi: 10.1371/journal.pone.0145165. eCollection 2016.

37.

Editorial: Advances in Farm Animal Genomic Resources.

Joost S, Bruford MW; Genomic-Resources Consortium.

Front Genet. 2015 Nov 24;6:333. doi: 10.3389/fgene.2015.00333. eCollection 2015. No abstract available.

38.

Prospects and challenges for the conservation of farm animal genomic resources, 2015-2025.

Bruford MW, Ginja C, Hoffmann I, Joost S, Orozco-terWengel P, Alberto FJ, Amaral AJ, Barbato M, Biscarini F, Colli L, Costa M, Curik I, Duruz S, Ferenčaković M, Fischer D, Fitak R, Groeneveld LF, Hall SJ, Hanotte O, Hassan FU, Helsen P, Iacolina L, Kantanen J, Leempoel K, Lenstra JA, Ajmone-Marsan P, Masembe C, Megens HJ, Miele M, Neuditschko M, Nicolazzi EL, Pompanon F, Roosen J, Sevane N, Smetko A, Štambuk A, Streeter I, Stucki S, Supakorn C, Telo Da Gama L, Tixier-Boichard M, Wegmann D, Zhan X.

Front Genet. 2015 Oct 21;6:314. doi: 10.3389/fgene.2015.00314. eCollection 2015.

39.

Mitogenomic Meta-Analysis Identifies Two Phases of Migration in the History of Eastern Eurasian Sheep.

Lv FH, Peng WF, Yang J, Zhao YX, Li WR, Liu MJ, Ma YH, Zhao QJ, Yang GL, Wang F, Li JQ, Liu YG, Shen ZQ, Zhao SG, Hehua E, Gorkhali NA, Farhad Vahidi SM, Muladno M, Naqvi AN, Tabell J, Iso-Touru T, Bruford MW, Kantanen J, Han JL, Li MH.

Mol Biol Evol. 2015 Oct;32(10):2515-33. doi: 10.1093/molbev/msv139. Epub 2015 Jun 16.

40.

Revisiting demographic processes in cattle with genome-wide population genetic analysis.

Orozco-terWengel P, Barbato M, Nicolazzi E, Biscarini F, Milanesi M, Davies W, Williams D, Stella A, Ajmone-Marsan P, Bruford MW.

Front Genet. 2015 Jun 2;6:191. doi: 10.3389/fgene.2015.00191. eCollection 2015.

41.

SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data.

Barbato M, Orozco-terWengel P, Tapio M, Bruford MW.

Front Genet. 2015 Mar 20;6:109. doi: 10.3389/fgene.2015.00109. eCollection 2015.

42.

Contrasting genetic diversity and population structure among three sympatric Madagascan shorebirds: parallels with rarity, endemism, and dispersal.

Eberhart-Phillips LJ, Hoffman JI, Brede EG, Zefania S, Kamrad MJ, Székely T, Bruford MW.

Ecol Evol. 2015 Mar;5(5):997-1010. doi: 10.1002/ece3.1393. Epub 2015 Jan 23.

43.

Comparative evaluation of potential indicators and temporal sampling protocols for monitoring genetic erosion.

Hoban S, Arntzen JA, Bruford MW, Godoy JA, Rus Hoelzel A, Segelbacher G, Vilà C, Bertorelle G.

Evol Appl. 2014 Nov;7(9):984-98. doi: 10.1111/eva.12197. Epub 2014 Aug 15.

44.

Genomics and the challenging translation into conservation practice.

Shafer AB, Wolf JB, Alves PC, Bergström L, Bruford MW, Brännström I, Colling G, Dalén L, De Meester L, Ekblom R, Fawcett KD, Fior S, Hajibabaei M, Hill JA, Hoezel AR, Höglund J, Jensen EL, Krause J, Kristensen TN, Krützen M, McKay JK, Norman AJ, Ogden R, Österling EM, Ouborg NJ, Piccolo J, Popović D, Primmer CR, Reed FA, Roumet M, Salmona J, Schenekar T, Schwartz MK, Segelbacher G, Senn H, Thaulow J, Valtonen M, Veale A, Vergeer P, Vijay N, Vilà C, Weissensteiner M, Wennerström L, Wheat CW, Zieliński P.

Trends Ecol Evol. 2015 Feb;30(2):78-87. doi: 10.1016/j.tree.2014.11.009. Epub 2014 Dec 17.

PMID:
25534246
45.

Whole-genome analyses resolve early branches in the tree of life of modern birds.

Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G.

Science. 2014 Dec 12;346(6215):1320-31. doi: 10.1126/science.1253451.

46.

Comparative genomics reveals insights into avian genome evolution and adaptation.

Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, Wang Z, Jin L, Zhang P, Hu H, Yang W, Hu J, Xiao J, Yang Z, Liu Y, Xie Q, Yu H, Lian J, Wen P, Zhang F, Li H, Zeng Y, Xiong Z, Liu S, Zhou L, Huang Z, An N, Wang J, Zheng Q, Xiong Y, Wang G, Wang B, Wang J, Fan Y, da Fonseca RR, Alfaro-Núñez A, Schubert M, Orlando L, Mourier T, Howard JT, Ganapathy G, Pfenning A, Whitney O, Rivas MV, Hara E, Smith J, Farré M, Narayan J, Slavov G, Romanov MN, Borges R, Machado JP, Khan I, Springer MS, Gatesy J, Hoffmann FG, Opazo JC, Håstad O, Sawyer RH, Kim H, Kim KW, Kim HJ, Cho S, Li N, Huang Y, Bruford MW, Zhan X, Dixon A, Bertelsen MF, Derryberry E, Warren W, Wilson RK, Li S, Ray DA, Green RE, O'Brien SJ, Griffin D, Johnson WE, Haussler D, Ryder OA, Willerslev E, Graves GR, Alström P, Fjeldså J, Mindell DP, Edwards SV, Braun EL, Rahbek C, Burt DW, Houde P, Zhang Y, Yang H, Wang J; Avian Genome Consortium, Jarvis ED, Gilbert MT, Wang J.

Science. 2014 Dec 12;346(6215):1311-20. doi: 10.1126/science.1251385. Epub 2014 Dec 11.

47.

Whole-genome sequencing of the snub-nosed monkey provides insights into folivory and evolutionary history.

Zhou X, Wang B, Pan Q, Zhang J, Kumar S, Sun X, Liu Z, Pan H, Lin Y, Liu G, Zhan W, Li M, Ren B, Ma X, Ruan H, Cheng C, Wang D, Shi F, Hui Y, Tao Y, Zhang C, Zhu P, Xiang Z, Jiang W, Chang J, Wang H, Cao Z, Jiang Z, Li B, Yang G, Roos C, Garber PA, Bruford MW, Li R, Li M.

Nat Genet. 2014 Dec;46(12):1303-10. doi: 10.1038/ng.3137. Epub 2014 Nov 2.

PMID:
25362486
48.

Identifying biochemical phenotypic differences between cryptic species.

Liebeke M, Bruford MW, Donnelly RK, Ebbels TM, Hao J, Kille P, Lahive E, Madison RM, Morgan AJ, Pinto-Juma GA, Spurgeon DJ, Svendsen C, Bundy JG.

Biol Lett. 2014 Sep;10(9). pii: 20140615. doi: 10.1098/rsbl.2014.0615.

49.

Admixture analysis in relation to pedigree studies of introgression in a minority British cattle breed: the Lincoln Red.

Bray TC, Hall SJ, Bruford MW.

J Anim Breed Genet. 2014 Feb;131(1):19-26. doi: 10.1111/jbg.12047. Epub 2013 Aug 5.

PMID:
25099785
50.

Mixed signals from hybrid genomes.

Orozco-terWengel PA, Bruford MW.

Mol Ecol. 2014 Aug;23(16):3941-3. doi: 10.1111/mec.12863.

PMID:
25088552

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