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Items: 17

1.

Surpassing 10 000 identified and quantified proteins in a single run by optimizing current LC-MS instrumentation and data analysis strategy.

Muntel J, Gandhi T, Verbeke L, Bernhardt OM, Treiber T, Bruderer R, Reiter L.

Mol Omics. 2019 Aug 29. doi: 10.1039/c9mo00082h. [Epub ahead of print]

PMID:
31465043
2.

Analysis of 1508 Plasma Samples by Capillary-Flow Data-Independent Acquisition Profiles Proteomics of Weight Loss and Maintenance.

Bruderer R, Muntel J, Müller S, Bernhardt OM, Gandhi T, Cominetti O, Macron C, Carayol J, Rinner O, Astrup A, Saris WHM, Hager J, Valsesia A, Dayon L, Reiter L.

Mol Cell Proteomics. 2019 Jun;18(6):1242-1254. doi: 10.1074/mcp.RA118.001288. Epub 2019 Apr 4.

3.

Comparison of Protein Quantification in a Complex Background by DIA and TMT Workflows with Fixed Instrument Time.

Muntel J, Kirkpatrick J, Bruderer R, Huang T, Vitek O, Ori A, Reiter L.

J Proteome Res. 2019 Mar 1;18(3):1340-1351. doi: 10.1021/acs.jproteome.8b00898. Epub 2019 Feb 20.

PMID:
30726097
4.

Cost-effective generation of precise label-free quantitative proteomes in high-throughput by microLC and data-independent acquisition.

Vowinckel J, Zelezniak A, Bruderer R, Mülleder M, Reiter L, Ralser M.

Sci Rep. 2018 Mar 12;8(1):4346. doi: 10.1038/s41598-018-22610-4.

5.

Optimization of Experimental Parameters in Data-Independent Mass Spectrometry Significantly Increases Depth and Reproducibility of Results.

Bruderer R, Bernhardt OM, Gandhi T, Xuan Y, Sondermann J, Schmidt M, Gomez-Varela D, Reiter L.

Mol Cell Proteomics. 2017 Dec;16(12):2296-2309. doi: 10.1074/mcp.RA117.000314. Epub 2017 Oct 25.

6.

WITHDRAWN: Heralds of parallel MS: Data-independent acquisition surpassing sequential identification of data dependent acquisition in proteomics.

Bruderer R, Bernhardt OM, Gandhi T, Xuan Y, Sondermann J, Schmidt M, Gomez-Varela D, Reiter L.

Mol Cell Proteomics. 2017 Apr 20. pii: mcp.M116.065730. doi: 10.1074/mcp.M116.065730. [Epub ahead of print]

7.

New targeted approaches for the quantification of data-independent acquisition mass spectrometry.

Bruderer R, Sondermann J, Tsou CC, Barrantes-Freer A, Stadelmann C, Nesvizhskii AI, Schmidt M, Reiter L, Gomez-Varela D.

Proteomics. 2017 May;17(9). doi: 10.1002/pmic.201700021.

8.

High-precision iRT prediction in the targeted analysis of data-independent acquisition and its impact on identification and quantitation.

Bruderer R, Bernhardt OM, Gandhi T, Reiter L.

Proteomics. 2016 Aug;16(15-16):2246-56. doi: 10.1002/pmic.201500488. Epub 2016 Jun 28.

9.

Extending the limits of quantitative proteome profiling with data-independent acquisition and application to acetaminophen-treated three-dimensional liver microtissues.

Bruderer R, Bernhardt OM, Gandhi T, Miladinović SM, Cheng LY, Messner S, Ehrenberger T, Zanotelli V, Butscheid Y, Escher C, Vitek O, Rinner O, Reiter L.

Mol Cell Proteomics. 2015 May;14(5):1400-10. doi: 10.1074/mcp.M114.044305. Epub 2015 Feb 27.

10.

Ubiquitylation of the chemokine receptor CCR7 enables efficient receptor recycling and cell migration.

Schaeuble K, Hauser MA, Rippl AV, Bruderer R, Otero C, Groettrup M, Legler DF.

J Cell Sci. 2012 Oct 1;125(Pt 19):4463-74. doi: 10.1242/jcs.097519. Epub 2012 Jul 13.

11.

Purification and identification of endogenous polySUMO conjugates.

Bruderer R, Tatham MH, Plechanovova A, Matic I, Garg AK, Hay RT.

EMBO Rep. 2011 Feb;12(2):142-8. doi: 10.1038/embor.2010.206. Epub 2011 Jan 21.

12.

Cdc48/p97 promotes reformation of the nucleus by extracting the kinase Aurora B from chromatin.

Ramadan K, Bruderer R, Spiga FM, Popp O, Baur T, Gotta M, Meyer HH.

Nature. 2007 Dec 20;450(7173):1258-62.

PMID:
18097415
13.

Characterization of a new AAA+ protein from archaea.

Summer H, Bruderer R, Weber-Ban E.

J Struct Biol. 2006 Oct;156(1):120-9. Epub 2006 Mar 9.

PMID:
16584891
14.

The AAA ATPase p97/VCP interacts with its alternative co-factors, Ufd1-Npl4 and p47, through a common bipartite binding mechanism.

Bruderer RM, Brasseur C, Meyer HH.

J Biol Chem. 2004 Nov 26;279(48):49609-16. Epub 2004 Sep 15.

15.

Growth of dissociated beating human heart cells in tissue culture.

Halbert SP, Bruderer R, Thompson A.

Life Sci. 1973 Oct 1;13(7):969-75. No abstract available.

PMID:
4766271
16.

The cardiac auto-immune system. 8. Immunofluorescence patterns of cultured rat heart cells exposed to rabbit anti-rabbit heart auto-antibodies.

Lin TM, Halbert SP, Bruderer R.

Int Arch Allergy Appl Immunol. 1973;44(1):62-76. No abstract available.

PMID:
4633168
17.

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