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Genetic history of the population of Crete.

Drineas P, Tsetsos F, Plantinga A, Lazaridis I, Yannaki E, Razou A, Kanaki K, Michalodimitrakis M, Perez-Jimenez F, De Silvestro G, Renda MC, Stamatoyannopoulos JA, Kidd KK, Browning BL, Paschou P, Stamatoyannopoulos G.

Ann Hum Genet. 2019 Jun 13. doi: 10.1111/ahg.12328. [Epub ahead of print]


A One-Penny Imputed Genome from Next-Generation Reference Panels.

Browning BL, Zhou Y, Browning SR.

Am J Hum Genet. 2018 Sep 6;103(3):338-348. doi: 10.1016/j.ajhg.2018.07.015. Epub 2018 Aug 9.


Genotype Imputation from Large Reference Panels.

Das S, Abecasis GR, Browning BL.

Annu Rev Genomics Hum Genet. 2018 Aug 31;19:73-96. doi: 10.1146/annurev-genom-083117-021602. Epub 2018 May 23. Review.


Ancestry-specific recent effective population size in the Americas.

Browning SR, Browning BL, Daviglus ML, Durazo-Arvizu RA, Schneiderman N, Kaplan RC, Laurie CC.

PLoS Genet. 2018 May 24;14(5):e1007385. doi: 10.1371/journal.pgen.1007385. eCollection 2018 May.


POPdemog: visualizing population demographic history from simulation scripts.

Zhou Y, Tian X, Browning BL, Browning SR.

Bioinformatics. 2018 Aug 15;34(16):2854-2855. doi: 10.1093/bioinformatics/bty184.


Analysis of Human Sequence Data Reveals Two Pulses of Archaic Denisovan Admixture.

Browning SR, Browning BL, Zhou Y, Tucci S, Akey JM.

Cell. 2018 Mar 22;173(1):53-61.e9. doi: 10.1016/j.cell.2018.02.031. Epub 2018 Mar 15.


Genome-wide association study of heart rate and its variability in Hispanic/Latino cohorts.

Kerr KF, Avery CL, Lin HJ, Raffield LM, Zhang QS, Browning BL, Browning SR, Conomos MP, Gogarten SM, Laurie CC, Sofer T, Thornton TA, Hohensee C, Jackson RD, Kooperberg C, Li Y, Méndez-Giráldez R, Perez MV, Peters U, Reiner AP, Zhang ZM, Yao J, Sotoodehnia N, Taylor KD, Guo X, Lange LA, Soliman EZ, Wilson JG, Rotter JI, Heckbert SR, Jain D, Whitsel EA.

Heart Rhythm. 2017 Nov;14(11):1675-1684. doi: 10.1016/j.hrthm.2017.06.018. Epub 2017 Jun 10.


Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.

Hodonsky CJ, Jain D, Schick UM, Morrison JV, Brown L, McHugh CP, Schurmann C, Chen DD, Liu YM, Auer PL, Laurie CA, Taylor KD, Browning BL, Li Y, Papanicolaou G, Rotter JI, Kurita R, Nakamura Y, Browning SR, Loos RJF, North KE, Laurie CC, Thornton TA, Pankratz N, Bauer DE, Sofer T, Reiner AP.

PLoS Genet. 2017 Apr 28;13(4):e1006760. doi: 10.1371/journal.pgen.1006760. eCollection 2017 Apr.


Genetics of the peloponnesean populations and the theory of extinction of the medieval peloponnesean Greeks.

Stamatoyannopoulos G, Bose A, Teodosiadis A, Tsetsos F, Plantinga A, Psatha N, Zogas N, Yannaki E, Zalloua P, Kidd KK, Browning BL, Stamatoyannopoulos J, Paschou P, Drineas P.

Eur J Hum Genet. 2017 May;25(5):637-645. doi: 10.1038/ejhg.2017.18. Epub 2017 Mar 8.


Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.

Jain D, Hodonsky CJ, Schick UM, Morrison JV, Minnerath S, Brown L, Schurmann C, Liu Y, Auer PL, Laurie CA, Taylor KD, Browning BL, Papanicolaou G, Browning SR, Loos RJF, North KE, Thyagarajan B, Laurie CC, Thornton TA, Sofer T, Reiner AP.

Hum Mol Genet. 2017 Mar 15;26(6):1193-1204. doi: 10.1093/hmg/ddx024.


Robust Inference of Identity by Descent from Exome-Sequencing Data.

Fu W, Browning SR, Browning BL, Akey JM.

Am J Hum Genet. 2016 Nov 3;99(5):1106-1116. doi: 10.1016/j.ajhg.2016.09.011. Epub 2016 Oct 13.


Consideration of Cosegregation in the Pathogenicity Classification of Genomic Variants.

Jarvik GP, Browning BL.

Am J Hum Genet. 2016 Jun 2;98(6):1077-1081. doi: 10.1016/j.ajhg.2016.04.003. Epub 2016 May 26.


Local Ancestry Inference in a Large US-Based Hispanic/Latino Study: Hispanic Community Health Study/Study of Latinos (HCHS/SOL).

Browning SR, Grinde K, Plantinga A, Gogarten SM, Stilp AM, Kaplan RC, Avilés-Santa ML, Browning BL, Laurie CC.

G3 (Bethesda). 2016 Jun 1;6(6):1525-34. doi: 10.1534/g3.116.028779.


ASAFE: ancestry-specific allele frequency estimation.

Zhang QS, Browning BL, Browning SR.

Bioinformatics. 2016 Jul 15;32(14):2227-9. doi: 10.1093/bioinformatics/btw220. Epub 2016 May 3.


Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans.

Schick UM, Jain D, Hodonsky CJ, Morrison JV, Davis JP, Brown L, Sofer T, Conomos MP, Schurmann C, McHugh CP, Nelson SC, Vadlamudi S, Stilp A, Plantinga A, Baier L, Bien SA, Gogarten SM, Laurie CA, Taylor KD, Liu Y, Auer PL, Franceschini N, Szpiro A, Rice K, Kerr KF, Rotter JI, Hanson RL, Papanicolaou G, Rich SS, Loos RJ, Browning BL, Browning SR, Weir BS, Laurie CC, Mohlke KL, North KE, Thornton TA, Reiner AP.

Am J Hum Genet. 2016 Feb 4;98(2):229-42. doi: 10.1016/j.ajhg.2015.12.003. Epub 2016 Jan 21.


Genetic Diversity and Association Studies in US Hispanic/Latino Populations: Applications in the Hispanic Community Health Study/Study of Latinos.

Conomos MP, Laurie CA, Stilp AM, Gogarten SM, McHugh CP, Nelson SC, Sofer T, Fernández-Rhodes L, Justice AE, Graff M, Young KL, Seyerle AA, Avery CL, Taylor KD, Rotter JI, Talavera GA, Daviglus ML, Wassertheil-Smoller S, Schneiderman N, Heiss G, Kaplan RC, Franceschini N, Reiner AP, Shaffer JR, Barr RG, Kerr KF, Browning SR, Browning BL, Weir BS, Avilés-Santa ML, Papanicolaou GJ, Lumley T, Szpiro AA, North KE, Rice K, Thornton TA, Laurie CC.

Am J Hum Genet. 2016 Jan 7;98(1):165-84. doi: 10.1016/j.ajhg.2015.12.001.


Genotype Imputation with Millions of Reference Samples.

Browning BL, Browning SR.

Am J Hum Genet. 2016 Jan 7;98(1):116-26. doi: 10.1016/j.ajhg.2015.11.020.


Accurate Non-parametric Estimation of Recent Effective Population Size from Segments of Identity by Descent.

Browning SR, Browning BL.

Am J Hum Genet. 2015 Sep 3;97(3):404-18. doi: 10.1016/j.ajhg.2015.07.012. Epub 2015 Aug 20.


Genome-wide haplotypic testing in a Finnish cohort identifies a novel association with low-density lipoprotein cholesterol.

Zhang QS, Browning BL, Browning SR.

Eur J Hum Genet. 2015 May;23(5):672-7. doi: 10.1038/ejhg.2014.105. Epub 2014 Jun 4.


Efficient clustering of identity-by-descent between multiple individuals.

Qian Y, Browning BL, Browning SR.

Bioinformatics. 2014 Apr 1;30(7):915-22. doi: 10.1093/bioinformatics/btt734. Epub 2013 Dec 19.


Large numbers of individuals are required to classify and define risk for rare variants in known cancer risk genes.

Shirts BH, Jacobson A, Jarvik GP, Browning BL.

Genet Med. 2014 Jul;16(7):529-34. doi: 10.1038/gim.2013.187. Epub 2013 Dec 19.


Detecting identity by descent and estimating genotype error rates in sequence data.

Browning BL, Browning SR.

Am J Hum Genet. 2013 Nov 7;93(5):840-51. doi: 10.1016/j.ajhg.2013.09.014. Epub 2013 Oct 24.


Exome sequencing reveals novel rare variants in the ryanodine receptor and calcium channel genes in malignant hyperthermia families.

Kim JH, Jarvik GP, Browning BL, Rajagopalan R, Gordon AS, Rieder MJ, Robertson PD, Nickerson DA, Fisher NA, Hopkins PM.

Anesthesiology. 2013 Nov;119(5):1054-65. doi: 10.1097/ALN.0b013e3182a8a998.


Additive genetic variation in schizophrenia risk is shared by populations of African and European descent.

de Candia TR, Lee SH, Yang J, Browning BL, Gejman PV, Levinson DF, Mowry BJ, Hewitt JK, Goddard ME, O'Donovan MC, Purcell SM, Posthuma D; International Schizophrenia Consortium; Molecular Genetics of Schizophrenia Collaboration, Visscher PM, Wray NR, Keller MC.

Am J Hum Genet. 2013 Sep 5;93(3):463-70. doi: 10.1016/j.ajhg.2013.07.007. Epub 2013 Aug 15.


Improving the accuracy and efficiency of identity-by-descent detection in population data.

Browning BL, Browning SR.

Genetics. 2013 Jun;194(2):459-71. doi: 10.1534/genetics.113.150029. Epub 2013 Mar 27.


Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.

Wu JH, Lemaitre RN, Manichaikul A, Guan W, Tanaka T, Foy M, Kabagambe EK, Djousse L, Siscovick D, Fretts AM, Johnson C, King IB, Psaty BM, McKnight B, Rich SS, Chen YD, Nettleton JA, Tang W, Bandinelli S, Jacobs DR Jr, Browning BL, Laurie CC, Gu X, Tsai MY, Steffen LM, Ferrucci L, Fornage M, Mozaffarian D.

Circ Cardiovasc Genet. 2013 Apr;6(2):171-83. doi: 10.1161/CIRCGENETICS.112.964619. Epub 2013 Jan 29.


Identity-by-descent-based heritability analysis in the Northern Finland Birth Cohort.

Browning SR, Browning BL.

Hum Genet. 2013 Feb;132(2):129-38. doi: 10.1007/s00439-012-1230-y. Epub 2012 Sep 29. Erratum in: Hum Genet. 2013 Aug;132(8):957-8.


Identity by descent between distant relatives: detection and applications.

Browning SR, Browning BL.

Annu Rev Genet. 2012;46:617-33. doi: 10.1146/annurev-genet-110711-155534. Epub 2012 Sep 17. Review.


Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.

Patsopoulos NA; Bayer Pharma MS Genetics Working Group; Steering Committees of Studies Evaluating IFNβ-1b and a CCR1-Antagonist; ANZgene Consortium; GeneMSA; International Multiple Sclerosis Genetics Consortium, Esposito F, Reischl J, Lehr S, Bauer D, Heubach J, Sandbrink R, Pohl C, Edan G, Kappos L, Miller D, Montalbán J, Polman CH, Freedman MS, Hartung HP, Arnason BG, Comi G, Cook S, Filippi M, Goodin DS, Jeffery D, O'Connor P, Ebers GC, Langdon D, Reder AT, Traboulsee A, Zipp F, Schimrigk S, Hillert J, Bahlo M, Booth DR, Broadley S, Brown MA, Browning BL, Browning SR, Butzkueven H, Carroll WM, Chapman C, Foote SJ, Griffiths L, Kermode AG, Kilpatrick TJ, Lechner-Scott J, Marriott M, Mason D, Moscato P, Heard RN, Pender MP, Perreau VM, Perera D, Rubio JP, Scott RJ, Slee M, Stankovich J, Stewart GJ, Taylor BV, Tubridy N, Willoughby E, Wiley J, Matthews P, Boneschi FM, Compston A, Haines J, Hauser SL, McCauley J, Ivinson A, Oksenberg JR, Pericak-Vance M, Sawcer SJ, De Jager PL, Hafler DA, de Bakker PI.

Ann Neurol. 2011 Dec;70(6):897-912. doi: 10.1002/ana.22609. Erratum in: Ann Neurol. 2013 Apr;73(4):561.


Performance of genotype imputation for rare variants identified in exons and flanking regions of genes.

Li L, Li Y, Browning SR, Browning BL, Slater AJ, Kong X, Aponte JL, Mooser VE, Chissoe SL, Whittaker JC, Nelson MR, Ehm MG.

PLoS One. 2011;6(9):e24945. doi: 10.1371/journal.pone.0024945. Epub 2011 Sep 19.


Haplotype phasing: existing methods and new developments.

Browning SR, Browning BL.

Nat Rev Genet. 2011 Sep 16;12(10):703-14. doi: 10.1038/nrg3054. Review.


Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.

Lemaitre RN, Tanaka T, Tang W, Manichaikul A, Foy M, Kabagambe EK, Nettleton JA, King IB, Weng LC, Bhattacharya S, Bandinelli S, Bis JC, Rich SS, Jacobs DR Jr, Cherubini A, McKnight B, Liang S, Gu X, Rice K, Laurie CC, Lumley T, Browning BL, Psaty BM, Chen YD, Friedlander Y, Djousse L, Wu JH, Siscovick DS, Uitterlinden AG, Arnett DK, Ferrucci L, Fornage M, Tsai MY, Mozaffarian D, Steffen LM.

PLoS Genet. 2011 Jul;7(7):e1002193. doi: 10.1371/journal.pgen.1002193. Epub 2011 Jul 28.


Population structure can inflate SNP-based heritability estimates.

Browning SR, Browning BL.

Am J Hum Genet. 2011 Jul 15;89(1):191-3; author reply 193-5. doi: 10.1016/j.ajhg.2011.05.025. No abstract available.


A fast, powerful method for detecting identity by descent.

Browning BL, Browning SR.

Am J Hum Genet. 2011 Feb 11;88(2):173-82. doi: 10.1016/j.ajhg.2011.01.010.


High-resolution detection of identity by descent in unrelated individuals.

Browning SR, Browning BL.

Am J Hum Genet. 2010 Apr 9;86(4):526-39. doi: 10.1016/j.ajhg.2010.02.021. Epub 2010 Mar 18.


A recurrent 16p12.1 microdeletion supports a two-hit model for severe developmental delay.

Girirajan S, Rosenfeld JA, Cooper GM, Antonacci F, Siswara P, Itsara A, Vives L, Walsh T, McCarthy SE, Baker C, Mefford HC, Kidd JM, Browning SR, Browning BL, Dickel DE, Levy DL, Ballif BC, Platky K, Farber DM, Gowans GC, Wetherbee JJ, Asamoah A, Weaver DD, Mark PR, Dickerson J, Garg BP, Ellingwood SA, Smith R, Banks VC, Smith W, McDonald MT, Hoo JJ, French BN, Hudson C, Johnson JP, Ozmore JR, Moeschler JB, Surti U, Escobar LF, El-Khechen D, Gorski JL, Kussmann J, Salbert B, Lacassie Y, Biser A, McDonald-McGinn DM, Zackai EH, Deardorff MA, Shaikh TH, Haan E, Friend KL, Fichera M, Romano C, Gécz J, DeLisi LE, Sebat J, King MC, Shaffer LG, Eichler EE.

Nat Genet. 2010 Mar;42(3):203-9. doi: 10.1038/ng.534. Epub 2010 Feb 14.


Genetic analysis of MDR1 and inflammatory bowel disease reveals protective effect of heterozygous variants for ulcerative colitis.

Huebner C, Browning BL, Petermann I, Han DY, Philpott M, Barclay M, Gearry R, McCulloch A, Demmers P, Ferguson LR.

Inflamm Bowel Dis. 2009 Dec;15(12):1784-93. doi: 10.1002/ibd.21019. Epub 2009 Aug 14.


Nucleotide-binding oligomerization domain containing 1 (NOD1) haplotypes and single nucleotide polymorphisms modify susceptibility to inflammatory bowel diseases in a New Zealand caucasian population: a case-control study.

Huebner C, Ferguson LR, Han DY, Philpott M, Barclay ML, Gearry RB, McCulloch A, Demmers PS, Browning BL.

BMC Res Notes. 2009 Mar 27;2:52. doi: 10.1186/1756-0500-2-52.


Interactions among genes influencing bacterial recognition increase IBD risk in a population-based New Zealand cohort.

Petermann I, Huebner C, Browning BL, Gearry RB, Barclay ML, Kennedy M, Roberts R, Shelling AN, Philpott M, Han DY, Ferguson LR.

Hum Immunol. 2009 Jun;70(6):440-6. doi: 10.1016/j.humimm.2009.03.002. Epub 2009 Mar 9.


A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals.

Browning BL, Browning SR.

Am J Hum Genet. 2009 Feb;84(2):210-23. doi: 10.1016/j.ajhg.2009.01.005. Epub 2009 Feb 5.


Single nucleotide polymorphisms in human Paneth cell defensin A5 may confer susceptibility to inflammatory bowel disease in a New Zealand Caucasian population.

Ferguson LR, Browning BL, Huebner C, Petermann I, Shelling AN, Demmers P, McCulloch A, Gearry RB, Barclay ML, Philpott M.

Dig Liver Dis. 2008 Sep;40(9):723-30. doi: 10.1016/j.dld.2008.02.011. Epub 2008 Apr 3.


Haplotypic analysis of Wellcome Trust Case Control Consortium data.

Browning BL, Browning SR.

Hum Genet. 2008 Apr;123(3):273-80. doi: 10.1007/s00439-008-0472-1. Epub 2008 Jan 26.


Has toll-like receptor 4 been prematurely dismissed as an inflammatory bowel disease gene? Association study combined with meta-analysis shows strong evidence for association.

Browning BL, Huebner C, Petermann I, Gearry RB, Barclay ML, Shelling AN, Ferguson LR.

Am J Gastroenterol. 2007 Nov;102(11):2504-12. Epub 2007 Sep 10.


Gender-stratified analysis of DLG5 R30Q in 4707 patients with Crohn disease and 4973 controls from 12 Caucasian cohorts.

Browning BL, Annese V, Barclay ML, Bingham SA, Brand S, Büning C, Castro M, Cucchiara S, Dallapiccola B, Drummond H, Ferguson LR, Ferraris A, Fisher SA, Gearry RB, Glas J, Henckaerts L, Huebner C, Knafelz D, Lakatos L, Lakatos PL, Latiano A, Liu X, Mathew C, Müller-Myhsok B, Newman WG, Nimmo ER, Noble CL, Palmieri O, Parkes M, Petermann I, Rutgeerts P, Satsangi J, Shelling AN, Siminovitch KA, Török HP, Tremelling M, Vermeire S, Valvano MR, Witt H.

J Med Genet. 2008 Jan;45(1):36-42. Epub 2007 Aug 10.


Genes, diet and inflammatory bowel disease.

Ferguson LR, Shelling AN, Browning BL, Huebner C, Petermann I.

Mutat Res. 2007 Sep 1;622(1-2):70-83. Epub 2007 Jun 2. Review.


Interactions among genes in the ErbB-Neuregulin signalling network are associated with increased susceptibility to schizophrenia.

Benzel I, Bansal A, Browning BL, Galwey NW, Maycox PR, McGinnis R, Smart D, St Clair D, Yates P, Purvis I.

Behav Brain Funct. 2007 Jun 28;3:31.


Triallelic single nucleotide polymorphisms and genotyping error in genetic epidemiology studies: MDR1 (ABCB1) G2677/T/A as an example.

Hüebner C, Petermann I, Browning BL, Shelling AN, Ferguson LR.

Cancer Epidemiol Biomarkers Prev. 2007 Jun;16(6):1185-92.

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