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Items: 1 to 50 of 843

1.

Analyzing contentious relationships and outlier genes in phylogenomics.

Walker JF, Brown JW, Smith SA.

Syst Biol. 2018 Jun 8. doi: 10.1093/sysbio/syy043. [Epub ahead of print]

PMID:
29893968
2.

Inactivated varicella zoster vaccine in autologous haemopoietic stem-cell transplant recipients: an international, multicentre, randomised, double-blind, placebo-controlled trial.

Winston DJ, Mullane KM, Cornely OA, Boeckh MJ, Brown JW, Pergam SA, Trociukas I, Žák P, Craig MD, Papanicolaou GA, Velez JD, Panse J, Hurtado K, Fernsler DA, Stek JE, Pang L, Su SC, Zhao Y, Chan ISF, Kaplan SS, Parrino J, Lee I, Popmihajlov Z, Annunziato PW, Arvin A; V212 Protocol 001 Trial Team.

Lancet. 2018 May 26;391(10135):2116-2127. doi: 10.1016/S0140-6736(18)30631-7. Epub 2018 May 24.

PMID:
29856344
3.

So many genes, so little time: A practical approach to divergence-time estimation in the genomic era.

Smith SA, Brown JW, Walker JF.

PLoS One. 2018 May 17;13(5):e0197433. doi: 10.1371/journal.pone.0197433. eCollection 2018.

4.

Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome.

Calixto CPG, Guo W, James AB, Tzioutziou NA, Entizne JC, Panter PE, Knight H, Nimmo H, Zhang R, Brown JWS.

Plant Cell. 2018 May 15. pii: tpc.00177.2018. doi: 10.1105/tpc.18.00177. [Epub ahead of print]

5.

Constructing a broadly inclusive seed plant phylogeny.

Smith SA, Brown JW.

Am J Bot. 2018 Mar;105(3):302-314. doi: 10.1002/ajb2.1019. Epub 2018 Feb 14.

PMID:
29746720
6.

Quartet Sampling distinguishes lack of support from conflicting support in the green plant tree of life.

Pease JB, Brown JW, Walker JF, Hinchliff CE, Smith SA.

Am J Bot. 2018 Mar;105(3):385-403. doi: 10.1002/ajb2.1016. Epub 2018 Feb 14.

PMID:
29746719
7.

Re-examining the rare and the lost: a review of fossil Tortricidae (Lepidoptera).

HeikkilÄ M, Brown JW, Baixeras J, Mey W, Kozlov MV.

Zootaxa. 2018 Mar 12;4394(1):41-60. doi: 10.11646/zootaxa.4394.1.2.

PMID:
29690381
8.

How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY).

James AB, Calixto CPG, Tzioutziou NA, Guo W, Zhang R, Simpson CG, Jiang W, Nimmo GA, Brown JWS, Nimmo HG.

Plant Cell Environ. 2018 Jul;41(7):1539-1550. doi: 10.1111/pce.13193. Epub 2018 May 2.

PMID:
29532482
9.

Polytetrafluoroethylene valved conduits for right ventricle-pulmonary artery reconstruction: Do they outperform xenografts and allografts?

Brown JW.

J Thorac Cardiovasc Surg. 2018 Jun;155(6):2577-2578. doi: 10.1016/j.jtcvs.2018.01.019. Epub 2018 Jan 31. No abstract available.

PMID:
29530576
10.

A Role for Salivary Peptides in the Innate Defense Against Enterotoxigenic Escherichia coli.

Brown JW, Badahdah A, Iticovici M, Vickers TJ, Alvarado DM, Helmerhorst EJ, Oppenheim FG, Mills JC, Ciorba MA, Fleckenstein JM, Bullitt E.

J Infect Dis. 2018 Apr 11;217(9):1435-1441. doi: 10.1093/infdis/jiy032.

PMID:
29528423
11.

Implementing Goal-Directed Foraging Decisions of a Simpler Nervous System in Simulation.

Brown JW, Caetano-Anollés D, Catanho M, Gribkova E, Ryckman N, Tian K, Voloshin M, Gillette R.

eNeuro. 2018 Mar 1;5(1). pii: ENEURO.0400-17.2018. doi: 10.1523/ENEURO.0400-17.2018. eCollection 2018 Jan-Feb.

12.

Frontal cortex function as derived from hierarchical predictive coding.

Alexander WH, Brown JW.

Sci Rep. 2018 Mar 1;8(1):3843. doi: 10.1038/s41598-018-21407-9.

13.

The small heat shock protein Hsp27 binds α-synuclein fibrils, preventing elongation and cytotoxicity.

Cox D, Whiten DR, Brown JWP, Horrocks MH, San Gil R, Dobson CM, Klenerman D, van Oijen AM, Ecroyd H.

J Biol Chem. 2018 Mar 23;293(12):4486-4497. doi: 10.1074/jbc.M117.813865. Epub 2018 Jan 30.

PMID:
29382725
14.

Profiling attention and cognition enhancing drugs in a rat touchscreen-based continuous performance test.

Ding Z, Brown JW, Rueter LE, Mohler EG.

Psychopharmacology (Berl). 2018 Apr;235(4):1093-1105. doi: 10.1007/s00213-017-4827-y. Epub 2018 Jan 13.

PMID:
29332255
15.

The Role of the Anterior Cingulate Cortex in Prediction Error and Signaling Surprise.

Alexander WH, Brown JW.

Top Cogn Sci. 2017 Nov 13. doi: 10.1111/tops.12307. [Epub ahead of print]

PMID:
29131512
16.

Implantable synthetic organoid matrices for intestinal regeneration.

Brown JW, Mills JC.

Nat Cell Biol. 2017 Oct 31;19(11):1307-1308. doi: 10.1038/ncb3635.

PMID:
29087385
17.

TSIS: an R package to infer alternative splicing isoform switches for time-series data.

Guo W, Calixto CPG, Brown JWS, Zhang R.

Bioinformatics. 2017 Oct 15;33(20):3308-3310. doi: 10.1093/bioinformatics/btx411.

18.

Bayesian and likelihood phylogenetic reconstructions of morphological traits are not discordant when taking uncertainty into consideration: a comment on Puttick et al.

Brown JW, Parins-Fukuchi C, Stull GW, Vargas OM, Smith SA.

Proc Biol Sci. 2017 Oct 11;284(1864). pii: 20170986. doi: 10.1098/rspb.2017.0986.

PMID:
29021179
19.

The Past Sure is Tense: On Interpreting Phylogenetic Divergence Time Estimates.

Brown JW, Smith SA.

Syst Biol. 2018 Mar 1;67(2):340-353. doi: 10.1093/sysbio/syx074.

PMID:
28945912
20.

Disparity, diversity, and duplications in the Caryophyllales.

Smith SA, Brown JW, Yang Y, Bruenn R, Drummond CP, Brockington SF, Walker JF, Last N, Douglas NA, Moore MJ.

New Phytol. 2018 Jan;217(2):836-854. doi: 10.1111/nph.14772. Epub 2017 Sep 11.

PMID:
28892163
21.

The development of scientific consensus: Analyzing conflict and concordance among avian phylogenies.

Brown JW, Wang N, Smith SA.

Mol Phylogenet Evol. 2017 Nov;116:69-77. doi: 10.1016/j.ympev.2017.08.002. Epub 2017 Aug 7.

PMID:
28797692
22.

Measurement of 239Pu in keratinous materials: A potential non-invasive bioassay for monitoring human exposure.

Brown JWN, Brockman JD, Robertson JD.

Appl Radiat Isot. 2017 Oct;128:132-135. doi: 10.1016/j.apradiso.2017.06.047. Epub 2017 Jul 1.

PMID:
28710932
23.

Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size.

Guo W, Calixto CPG, Tzioutziou N, Lin P, Waugh R, Brown JWS, Zhang R.

BMC Syst Biol. 2017 Jun 19;11(1):62. doi: 10.1186/s12918-017-0440-2.

24.

Prefrontal Cortex in Control: Broadening the Scope to Identify Mechanisms.

Alexander WH, Brown JW, Collins AGE, Hayden BY, Vassena E.

J Cogn Neurosci. 2017 May 31:1-5. doi: 10.1162/jocn_a_01154. [Epub ahead of print]

PMID:
28562208
25.

Foraging Value, Risk Avoidance, and Multiple Control Signals: How the Anterior Cingulate Cortex Controls Value-based Decision-making.

Brown JW, Alexander WH.

J Cogn Neurosci. 2017 Oct;29(10):1656-1673. doi: 10.1162/jocn_a_01140. Epub 2017 Apr 21.

PMID:
28430040
26.

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing.

Zhang R, Calixto CPG, Marquez Y, Venhuizen P, Tzioutziou NA, Guo W, Spensley M, Entizne JC, Lewandowska D, Ten Have S, Frei Dit Frey N, Hirt H, James AB, Nimmo HG, Barta A, Kalyna M, Brown JWS.

Nucleic Acids Res. 2017 May 19;45(9):5061-5073. doi: 10.1093/nar/gkx267.

27.

Do Consultants Follow Up on Tests They Recommend? Insights from an Academic Inpatient Gastrointestinal Consult Service.

Cassell BE, Walker T, Alghamdi S, Bill J, Blais P, Boutté H, Brown JW, Sayuk GS, Gyawali CP.

Dig Dis Sci. 2017 Jun;62(6):1448-1454. doi: 10.1007/s10620-017-4563-5. Epub 2017 Apr 8.

28.

Twin-to-Twin Heart Transplantation: A Unique Event With a 25-Year Follow-Up.

Blitzer D, Yedlicka G, Manghelli J, Dentel J, Caldwell R, Brown JW.

Ann Thorac Surg. 2017 Apr;103(4):e341-e342. doi: 10.1016/j.athoracsur.2016.09.060.

PMID:
28359493
29.

A Urea Potentiometric Biosensor Based on a Thiophene Copolymer.

Lai CK, Foot PJ, Brown JW, Spearman P.

Biosensors (Basel). 2017 Mar 3;7(1). pii: E13. doi: 10.3390/bios7010013.

30.

Treatment effectiveness of alemtuzumab compared with natalizumab, fingolimod, and interferon beta in relapsing-remitting multiple sclerosis: a cohort study.

Kalincik T, Brown JWL, Robertson N, Willis M, Scolding N, Rice CM, Wilkins A, Pearson O, Ziemssen T, Hutchinson M, McGuigan C, Jokubaitis V, Spelman T, Horakova D, Havrdova E, Trojano M, Izquierdo G, Lugaresi A, Prat A, Girard M, Duquette P, Grammond P, Alroughani R, Pucci E, Sola P, Hupperts R, Lechner-Scott J, Terzi M, Van Pesch V, Rozsa C, Grand'Maison F, Boz C, Granella F, Slee M, Spitaleri D, Olascoaga J, Bergamaschi R, Verheul F, Vucic S, McCombe P, Hodgkinson S, Sanchez-Menoyo JL, Ampapa R, Simo M, Csepany T, Ramo C, Cristiano E, Barnett M, Butzkueven H, Coles A; MSBase Study Group.

Lancet Neurol. 2017 Apr;16(4):271-281. doi: 10.1016/S1474-4422(17)30007-8. Epub 2017 Feb 11.

PMID:
28209331
31.

Phyx: phylogenetic tools for unix.

Brown JW, Walker JF, Smith SA.

Bioinformatics. 2017 Jun 15;33(12):1886-1888. doi: 10.1093/bioinformatics/btx063.

32.

Training cardiac surgeons: the Indiana University experience.

Brown JW.

Cardiol Young. 2016 Dec;26(8):1484-1490. doi: 10.1017/S1047951116002420.

PMID:
28148331
33.

An abnormal periventricular magnetization transfer ratio gradient occurs early in multiple sclerosis.

Brown JW, Pardini M, Brownlee WJ, Fernando K, Samson RS, Prados Carrasco F, Ourselin S, Gandini Wheeler-Kingshott CA, Miller DH, Chard DT.

Brain. 2017 Feb;140(2):387-398. doi: 10.1093/brain/aww296. Epub 2017 Jan 2.

34.

Right Ventricular Outflow Tract Reconstruction With a Polytetrafluoroethylene Monocusp Valve: A 20-Year Experience.

Kumar M, Turrentine MW, Rodefeld MD, Bell T, Brown JW.

Semin Thorac Cardiovasc Surg. 2016 Summer;28(2):463-470. doi: 10.1053/j.semtcvs.2016.05.003. Epub 2016 Jun 2.

PMID:
28043462
35.

Neural responses to negative outcomes predict success in community-based substance use treatment.

Forster SE, Finn PR, Brown JW.

Addiction. 2017 May;112(5):884-896. doi: 10.1111/add.13734. Epub 2017 Feb 3.

36.

Alternative Splicing of Barley Clock Genes in Response to Low Temperature.

Calixto CP, Simpson CG, Waugh R, Brown JW.

PLoS One. 2016 Dec 13;11(12):e0168028. doi: 10.1371/journal.pone.0168028. eCollection 2016.

37.

β-Synuclein suppresses both the initiation and amplification steps of α-synuclein aggregation via competitive binding to surfaces.

Brown JW, Buell AK, Michaels TC, Meisl G, Carozza J, Flagmeier P, Vendruscolo M, Knowles TP, Dobson CM, Galvagnion C.

Sci Rep. 2016 Nov 3;6:36010. doi: 10.1038/srep36010.

38.

Distinct Regions within Medial Prefrontal Cortex Process Pain and Cognition.

Jahn A, Nee DE, Alexander WH, Brown JW.

J Neurosci. 2016 Dec 7;36(49):12385-12392. Epub 2016 Nov 2.

39.

Performance of SynerGraft Decellularized Pulmonary Allografts Compared With Standard Cryopreserved Allografts: Results From Multiinstitutional Data.

Bibevski S, Ruzmetov M, Fortuna RS, Turrentine MW, Brown JW, Ohye RG.

Ann Thorac Surg. 2017 Mar;103(3):869-874. doi: 10.1016/j.athoracsur.2016.07.068. Epub 2016 Oct 24.

PMID:
27788940
40.

A preliminary study of longitudinal neuroadaptation associated with recovery from addiction.

Forster SE, Finn PR, Brown JW.

Drug Alcohol Depend. 2016 Nov 1;168:52-60. doi: 10.1016/j.drugalcdep.2016.08.626. Epub 2016 Sep 9.

41.

Vasoactive-ventilation-renal score reliably predicts hospital length of stay after surgery for congenital heart disease.

Scherer B, Moser EA, Brown JW, Rodefeld MD, Turrentine MW, Mastropietro CW.

J Thorac Cardiovasc Surg. 2016 Nov;152(5):1423-1429.e1. doi: 10.1016/j.jtcvs.2016.07.070. Epub 2016 Aug 20.

PMID:
27649997
42.

Training Patterns and Lifetime Career Achievements of US Academic Cardiothoracic Surgeons.

Rosati CM, Valsangkar NP, Gaudino M, Blitzer D, Vardas PN, Girardi LN, Turrentine MW, Brown JW, Koniaris LG.

World J Surg. 2017 Mar;41(3):748-757. doi: 10.1007/s00268-016-3760-2.

PMID:
27734077
43.

High-quality reference transcript datasets hold the key to transcript-specific RNA-sequencing analysis in plants.

Brown JW, Calixto CP, Zhang R.

New Phytol. 2017 Jan;213(2):525-530. doi: 10.1111/nph.14208. Epub 2016 Sep 23. Review.

44.

Multi-locus phylogenetic inference among New World Vultures (Aves: Cathartidae).

Johnson JA, Brown JW, Fuchs J, Mindell DP.

Mol Phylogenet Evol. 2016 Dec;105:193-199. doi: 10.1016/j.ympev.2016.08.025. Epub 2016 Sep 4.

PMID:
27601346
45.

Measurement of Uranium Isotope Ratios in Keratinous Materials: A Noninvasive Bioassay for Special Nuclear Material.

Brockman JD, Brown JW, Morrell JS, Robertson JD.

Anal Chem. 2016 Sep 6;88(17):8765-71. doi: 10.1021/acs.analchem.6b02144. Epub 2016 Aug 16.

PMID:
27484415
46.

Predictive decision making driven by multiple time-linked reward representations in the anterior cingulate cortex.

Wittmann MK, Kolling N, Akaishi R, Chau BK, Brown JW, Nelissen N, Rushworth MF.

Nat Commun. 2016 Aug 1;7:12327. doi: 10.1038/ncomms12327.

47.

The Arabidopsis SR45 Splicing Factor, a Negative Regulator of Sugar Signaling, Modulates SNF1-Related Protein Kinase 1 Stability.

Carvalho RF, Szakonyi D, Simpson CG, Barbosa IC, Brown JW, Baena-González E, Duque P.

Plant Cell. 2016 Aug;28(8):1910-25. doi: 10.1105/tpc.16.00301. Epub 2016 Jul 19.

48.

Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation.

Russell J, Mascher M, Dawson IK, Kyriakidis S, Calixto C, Freund F, Bayer M, Milne I, Marshall-Griffiths T, Heinen S, Hofstad A, Sharma R, Himmelbach A, Knauft M, van Zonneveld M, Brown JW, Schmid K, Kilian B, Muehlbauer GJ, Stein N, Waugh R.

Nat Genet. 2016 Sep;48(9):1024-30. doi: 10.1038/ng.3612. Epub 2016 Jul 18.

PMID:
27428750
49.

Transforming MOFs for Energy Applications Using the Guest@MOF Concept.

Ullman AM, Brown JW, Foster ME, Léonard F, Leong K, Stavila V, Allendorf MD.

Inorg Chem. 2016 Aug 1;55(15):7233-49. doi: 10.1021/acs.inorgchem.6b00909. Epub 2016 Jul 11.

PMID:
27399607
50.

Chemical properties of lipids strongly affect the kinetics of the membrane-induced aggregation of α-synuclein.

Galvagnion C, Brown JW, Ouberai MM, Flagmeier P, Vendruscolo M, Buell AK, Sparr E, Dobson CM.

Proc Natl Acad Sci U S A. 2016 Jun 28;113(26):7065-70. doi: 10.1073/pnas.1601899113. Epub 2016 Jun 13.

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