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Items: 32

1.

Capreomycin Resistance Prediction in Two Species of Mycobacterium Using a Stacked Ensemble Method.

Chowdhury AS, Khaledian E, Broschat SL.

J Appl Microbiol. 2019 Aug 16. doi: 10.1111/jam.14413. [Epub ahead of print]

PMID:
31419358
2.

Prediction of T4SS Effector Proteins for Anaplasma phagocytophilum Using OPT4e, A New Software Tool.

Esna Ashari Z, Brayton KA, Broschat SL.

Front Microbiol. 2019 Jun 21;10:1391. doi: 10.3389/fmicb.2019.01391. eCollection 2019.

3.

Whole Proteome Clustering of 2,307 Proteobacterial Genomes Reveals Conserved Proteins and Significant Annotation Issues.

Lockwood S, Brayton KA, Daily JA, Broschat SL.

Front Microbiol. 2019 Feb 28;10:383. doi: 10.3389/fmicb.2019.00383. eCollection 2019.

4.

Using an optimal set of features with a machine learning-based approach to predict effector proteins for Legionella pneumophila.

Esna Ashari Z, Brayton KA, Broschat SL.

PLoS One. 2019 Jan 25;14(1):e0202312. doi: 10.1371/journal.pone.0202312. eCollection 2019.

5.

An optimal set of features for predicting type IV secretion system effector proteins for a subset of species based on a multi-level feature selection approach.

Esna Ashari Z, Dasgupta N, Brayton KA, Broschat SL.

PLoS One. 2018 May 9;13(5):e0197041. doi: 10.1371/journal.pone.0197041. eCollection 2018.

6.

Alignment-free clustering of large data sets of unannotated protein conserved regions using minhashing.

Abnousi A, Broschat SL, Kalyanaraman A.

BMC Bioinformatics. 2018 Mar 5;19(1):83. doi: 10.1186/s12859-018-2080-y.

7.

A Fast Alignment-Free Approach for De Novo Detection of Protein Conserved Regions.

Abnousi A, Broschat SL, Kalyanaraman A.

PLoS One. 2016 Aug 23;11(8):e0161338. doi: 10.1371/journal.pone.0161338. eCollection 2016.

8.

Comparative genomics reveals multiple pathways to mutualism for tick-borne pathogens.

Lockwood S, Brayton KA, Broschat SL.

BMC Genomics. 2016 Jul 2;17:481. doi: 10.1186/s12864-016-2744-9.

9.

Primary Structural Variation in Anaplasma marginale Msp2 Efficiently Generates Immune Escape Variants.

Graça T, Paradiso L, Broschat SL, Noh SM, Palmer GH.

Infect Immun. 2015 Nov;83(11):4178-84. doi: 10.1128/IAI.00851-15. Epub 2015 Aug 10.

10.

Automated training for algorithms that learn from genomic data.

Cilingir G, Broschat SL.

Biomed Res Int. 2015;2015:234236. doi: 10.1155/2015/234236. Epub 2015 Jan 28.

11.

ApicoAMP: the first computational model for identifying apicoplast-targeted transmembrane proteins in Apicomplexa.

Cilingir G, Lau AO, Broschat SL.

J Microbiol Methods. 2013 Dec;95(3):313-9. doi: 10.1016/j.mimet.2013.09.017. Epub 2013 Oct 3.

PMID:
24095682
12.

Using protein clusters from whole proteomes to construct and augment a dendrogram.

Zhou Y, Call DR, Broschat SL.

Adv Bioinformatics. 2013;2013:191586. doi: 10.1155/2013/191586. Epub 2013 Feb 20.

13.

Whole-proteome analysis of twelve species of alphaproteobacteria links four pathogens.

Zhou Y, Call DR, Broschat SL.

Pathogens. 2013 Nov 26;2(4):627-35. doi: 10.3390/pathogens2040627.

14.

Genetic relationships among 527 Gram-negative bacterial plasmids.

Zhou Y, Call DR, Broschat SL.

Plasmid. 2012 Sep;68(2):133-41. doi: 10.1016/j.plasmid.2012.05.002. Epub 2012 May 12.

PMID:
22587825
15.

Expansion of variant diversity associated with a high prevalence of pathogen strain superinfection under conditions of natural transmission.

Ueti MW, Tan Y, Broschat SL, Castañeda Ortiz EJ, Camacho-Nuez M, Mosqueda JJ, Scoles GA, Grimes M, Brayton KA, Palmer GH.

Infect Immun. 2012 Jul;80(7):2354-60. doi: 10.1128/IAI.00341-12. Epub 2012 May 14.

16.

ApicoAP: the first computational model for identifying apicoplast-targeted proteins in multiple species of Apicomplexa.

Cilingir G, Broschat SL, Lau AO.

PLoS One. 2012;7(5):e36598. doi: 10.1371/journal.pone.0036598. Epub 2012 May 4.

17.

Identification of Anaplasma marginale type IV secretion system effector proteins.

Lockwood S, Voth DE, Brayton KA, Beare PA, Brown WC, Heinzen RA, Broschat SL.

PLoS One. 2011;6(11):e27724. doi: 10.1371/journal.pone.0027724. Epub 2011 Nov 28.

18.

Genotypic-phenotypic discrepancies between antibiotic resistance characteristics of Escherichia coli isolates from calves in management settings with high and low antibiotic use.

Davis MA, Besser TE, Orfe LH, Baker KN, Lanier AS, Broschat SL, New D, Call DR.

Appl Environ Microbiol. 2011 May;77(10):3293-9. doi: 10.1128/AEM.02588-10. Epub 2011 Mar 18.

19.

Improved identification of epidemiologically related strains of Salmonella enterica by use of a fusion algorithm based on pulsed-field gel electrophoresis and multiple-locus variable-number tandem-repeat analysis.

Broschat SL, Call DR, Davis MA, Meng D, Lockwood S, Ahmed R, Besser TE.

J Clin Microbiol. 2010 Nov;48(11):4072-82. doi: 10.1128/JCM.00659-10. Epub 2010 Aug 25.

20.

blaCMY-2-positive IncA/C plasmids from Escherichia coli and Salmonella enterica are a distinct component of a larger lineage of plasmids.

Call DR, Singer RS, Meng D, Broschat SL, Orfe LH, Anderson JM, Herndon DR, Kappmeyer LS, Daniels JB, Besser TE.

Antimicrob Agents Chemother. 2010 Feb;54(2):590-6. doi: 10.1128/AAC.00055-09. Epub 2009 Nov 30.

21.

A Java-based tool for the design of classification microarrays.

Meng D, Broschat SL, Call DR.

BMC Bioinformatics. 2008 Aug 4;9:328. doi: 10.1186/1471-2105-9-328.

22.

A discrete, stochastic model and correction method for bacterial source tracking.

Leach MD, Broschat SL, Call DR.

Environ Sci Technol. 2008 Jan 15;42(2):524-9.

PMID:
18284157
23.

Erratum - correction to :ultrasound imaging using variations of the iterative born technique".

Liu L, Zhang X, Broschat SL.

IEEE Trans Ultrason Ferroelectr Freq Control. 1999;46(5):1331-3. doi: 10.1109/TUFFC.1999.796140. No abstract available.

PMID:
18244327
24.

Ultrasound imaging using variations of the iterative Born technique [biomedical diagnosis].

Liu L, Zhang X, Broschat SL.

IEEE Trans Ultrason Ferroelectr Freq Control. 1999;46(3):574-83. doi: 10.1109/58.764844.

PMID:
18238458
25.

Validation of mixed-genome microarrays as a method for genetic discrimination.

Wan Y, Broschat SL, Call DR.

Appl Environ Microbiol. 2007 Mar;73(5):1425-32. Epub 2007 Jan 5.

26.

Optical reflectance assay for the detection of biofilm formation.

Broschat SL, Loge FJ, Peppin JD, White D, Call DR, Kuhn E.

J Biomed Opt. 2005 Jul-Aug;10(4):44027.

PMID:
16178660
27.

A comparison of material classification techniques for ultrasound inverse imaging.

Zhang X, Broschat SL, Flynn PJ.

J Acoust Soc Am. 2002 Jan;111(1 Pt 1):457-67.

PMID:
11831821
28.

Inverse imaging of the breast with a material classification technique.

Manry CW Jr, Broschat SL.

J Acoust Soc Am. 1998 Mar;103(3):1538-46.

PMID:
9514017
29.

Phase insensitive homomorphic image processing for speckle reduction.

Chen Y, Broschat SL, Flynn PJ.

Ultrason Imaging. 1996 Apr;18(2):122-39.

PMID:
8813031
30.

FDTD simulations for ultrasound propagation in a 2-D breast model.

Manry CW Jr, Broschat SL.

Ultrason Imaging. 1996 Jan;18(1):25-34.

PMID:
8792561
31.

An eccentrically coated asymmetric antenna applicator for intracavitary hyperthermia treatment of cancer.

Manry CW Jr, Broschat SL, Chou CK, McDougall JA.

IEEE Trans Biomed Eng. 1992 Sep;39(9):935-42.

PMID:
1473822
32.

An insulated dipole applicator for intracavitary hyperthermia.

Broschat SL, Chou CK, Luk KH, Guy AW, Ishimaru A.

IEEE Trans Biomed Eng. 1988 Mar;35(3):173-8. No abstract available.

PMID:
3350545

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