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Items: 1 to 50 of 114

1.

Racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy.

Serrano MG, Parikh HI, Brooks JP, Edwards DJ, Arodz TJ, Edupuganti L, Huang B, Girerd PH, Bokhari YA, Bradley SP, Brooks JL, Dickinson MR, Drake JI, Duckworth RA 3rd, Fong SS, Glascock AL, Jean S, Jimenez NR, Khoury J, Koparde VN, Lara AM, Lee V, Matveyev AV, Milton SH, Mistry SD, Rozycki SK, Sheth NU, Smirnova E, Vivadelli SC, Wijesooriya NR, Xu J, Xu P, Chaffin DO, Sexton AL, Gravett MG, Rubens CE, Hendricks-Muñoz KD, Jefferson KK, Strauss JF 3rd, Fettweis JM, Buck GA.

Nat Med. 2019 Jun;25(6):1001-1011. doi: 10.1038/s41591-019-0465-8. Epub 2019 May 29.

PMID:
31142850
2.

The vaginal microbiome and preterm birth.

Fettweis JM, Serrano MG, Brooks JP, Edwards DJ, Girerd PH, Parikh HI, Huang B, Arodz TJ, Edupuganti L, Glascock AL, Xu J, Jimenez NR, Vivadelli SC, Fong SS, Sheth NU, Jean S, Lee V, Bokhari YA, Lara AM, Mistry SD, Duckworth RA 3rd, Bradley SP, Koparde VN, Orenda XV, Milton SH, Rozycki SK, Matveyev AV, Wright ML, Huzurbazar SV, Jackson EM, Smirnova E, Korlach J, Tsai YC, Dickinson MR, Brooks JL, Drake JI, Chaffin DO, Sexton AL, Gravett MG, Rubens CE, Wijesooriya NR, Hendricks-Muñoz KD, Jefferson KK, Strauss JF 3rd, Buck GA.

Nat Med. 2019 Jun;25(6):1012-1021. doi: 10.1038/s41591-019-0450-2. Epub 2019 May 29.

PMID:
31142849
3.

The influence of chlorination timing and concentration on microbial communities in labyrinth channels: implications for biofilm removal.

Song P, Zhou B, Feng G, Brooks JP, Zhou H, Zhao Z, Liu Y, Li Y.

Biofouling. 2019 Apr;35(4):401-415. doi: 10.1080/08927014.2019.1600191. Epub 2019 May 30.

PMID:
31142151
4.

Metabolic characterization of the chitinolytic bacterium Serratia marcescens using a genome-scale metabolic model.

Yan Q, Robert S, Brooks JP, Fong SS.

BMC Bioinformatics. 2019 May 6;20(1):227. doi: 10.1186/s12859-019-2826-1.

5.

Etoposide phosphate for pediatric orthopedic malignancies after intravenous etoposide hypersensitivity.

Brooks JP, Azmy V, Thompson A, Luon D, Prozora SD, Price C, Hsu FI.

J Oncol Pharm Pract. 2019 Mar 18:1078155219836478. doi: 10.1177/1078155219836478. [Epub ahead of print]

PMID:
30885040
6.

Removal of fecal indicator bacteria and antibiotic resistant genes in constructed wetlands.

Lamori JG, Xue J, Rachmadi AT, Lopez GU, Kitajima M, Gerba CP, Pepper IL, Brooks JP, Sherchan S.

Environ Sci Pollut Res Int. 2019 Apr;26(10):10188-10197. doi: 10.1007/s11356-019-04468-9. Epub 2019 Feb 13.

PMID:
30758793
7.

Effects of Low-Grade Weirs on Soil Microbial Communities in Agricultural Drainage Ditches.

Baker BH, Brooks JP, Deng DD, Smith RK, Kröger R, Prince Czarnecki JM.

J Environ Qual. 2018 Sep;47(5):1155-1162. doi: 10.2134/jeq2017.12.0489.

PMID:
30272767
8.

Resolution of eosinophilia and elevated immunoglobulin E with ibrutinib for chronic lymphocytic leukemia.

Harada K, Brooks JP, Lobo FM.

Ann Allergy Asthma Immunol. 2018 Nov;121(5):629-630.e1. doi: 10.1016/j.anai.2018.07.007. Epub 2018 Sep 22. No abstract available.

PMID:
30009879
9.

Effects of Subsurface Banding and Broadcast of Poultry Litter and Cover Crop on Soil Microbial Populations.

Brooks JP, Tewolde H, Adeli A, Shankle MW, Way TR, Smith RK, Pepper IL.

J Environ Qual. 2018 May;47(3):427-435. doi: 10.2134/jeq2017.09.0382.

PMID:
29864187
10.

An accurate bacterial DNA quantification assay for HTS library preparation of human biological samples.

Seashols-Williams S, Green R, Wohlfahrt D, Brand A, Tan-Torres AL, Nogales F, Brooks JP, Singh B.

Electrophoresis. 2018 Nov;39(21):2824-2832. doi: 10.1002/elps.201800127. Epub 2018 Jun 13.

PMID:
29772600
11.

Antibiotic Resistant Bacteria in Municipal Wastes: Is There Reason for Concern?

Pepper IL, Brooks JP, Gerba CP.

Environ Sci Technol. 2018 Apr 3;52(7):3949-3959. doi: 10.1021/acs.est.7b04360. Epub 2018 Mar 19.

PMID:
29505255
12.

Metabolic Profile of the Cellulolytic Industrial Actinomycete Thermobifida fusca.

Vanee N, Brooks JP, Fong SS.

Metabolites. 2017 Nov 11;7(4). pii: E57. doi: 10.3390/metabo7040057.

13.

Within-House Spatial Distribution of Fecal Indicator Bacteria in Poultry Litter.

Winkler S, Coufal C, Harmel D, Martin E, Brooks JP, Popham S, Gentry TJ.

J Environ Qual. 2017 Sep;46(5):1003-1009. doi: 10.2134/jeq2017.05.0188.

PMID:
28991967
14.

Association between statin use, the vaginal microbiome, and Gardnerella vaginalis vaginolysin-mediated cytotoxicity.

Abdelmaksoud AA, Girerd PH, Garcia EM, Brooks JP, Leftwich LM, Sheth NU, Bradley SP, Serrano MG, Fettweis JM, Huang B, Strauss JF 3rd, Buck GA, Jefferson KK.

PLoS One. 2017 Aug 28;12(8):e0183765. doi: 10.1371/journal.pone.0183765. eCollection 2017.

15.

Changes in vaginal community state types reflect major shifts in the microbiome.

Brooks JP, Buck GA, Chen G, Diao L, Edwards DJ, Fettweis JM, Huzurbazar S, Rakitin A, Satten GA, Smirnova E, Waks Z, Wright ML, Yanover C, Zhou YH.

Microb Ecol Health Dis. 2017 Apr 10;28(1):1303265. doi: 10.1080/16512235.2017.1303265. eCollection 2017.

16.

Supplemental invasion of Salmonella from the perspective of Salmonella enterica serovars Kentucky and Typhimurium.

Howe K, Salehi S, Hartford Bailey R, Brooks JP, Wills R, Lawrence ML, Karsi A.

BMC Microbiol. 2017 Apr 5;17(1):88. doi: 10.1186/s12866-017-0989-3.

17.

Broiler Litter × Industrial By-Products Reduce Nutrients and Microbial Losses in Surface Runoff When Applied to Forages.

Adeli A, Read JJ, Brooks JP, Miles D, Feng G, Jenkins JN.

J Environ Qual. 2017 Mar;46(2):339-347. doi: 10.2134/jeq2016.07.0255.

PMID:
28380557
18.

Identifying Hospital Antimicrobial Resistance Targets via Robust Ranking.

Brooks JP, Dulá JH, Pakyz AL, Polk RE.

IISE Trans Healthc Syst Eng. 2017;7:121-128. doi: 10.1080/24725579.2017.1339148. Epub 2017 Jul 26.

19.

Idiopathic CD4 lymphocytopenia.

Brooks JP, Ghaffari G.

Allergy Asthma Proc. 2016 Nov;37(6):501-504.

PMID:
27931306
20.

Effects of combined oral contraceptives, depot medroxyprogesterone acetate and the levonorgestrel-releasing intrauterine system on the vaginal microbiome.

Brooks JP, Edwards DJ, Blithe DL, Fettweis JM, Serrano MG, Sheth NU, Strauss JF 3rd, Buck GA, Jefferson KK.

Contraception. 2017 Apr;95(4):405-413. doi: 10.1016/j.contraception.2016.11.006. Epub 2016 Nov 29.

21.

Salmonella enterica Serovar Kentucky Flagella Are Required for Broiler Skin Adhesion and Caco-2 Cell Invasion.

Salehi S, Howe K, Lawrence ML, Brooks JP, Bailey RH, Karsi A.

Appl Environ Microbiol. 2016 Dec 30;83(2). pii: e02115-16. doi: 10.1128/AEM.02115-16. Print 2017 Jan 15.

22.

Decay rates of zoonotic pathogens and viral surrogates in soils amended with biosolids and manures and comparison of qPCR and culture derived rates.

Roberts BN, Bailey RH, McLaughlin MR, Brooks JP.

Sci Total Environ. 2016 Dec 15;573:671-679. doi: 10.1016/j.scitotenv.2016.08.088. Epub 2016 Aug 30.

PMID:
27585434
23.

Challenges for case-control studies with microbiome data.

Brooks JP.

Ann Epidemiol. 2016 May;26(5):336-341.e1. doi: 10.1016/j.annepidem.2016.03.009. Epub 2016 Apr 7. Review.

PMID:
27255739
24.

Cultivation and qPCR Detection of Pathogenic and Antibiotic-Resistant Bacterial Establishment in Naive Broiler Houses.

Brooks JP, McLaughlin MR, Adeli A, Miles DM.

J Environ Qual. 2016 May;45(3):958-66. doi: 10.2134/jeq2015.09.0492.

PMID:
27136163
25.

A 73-year-old woman with persistent diarrhea and onychomycosis.

Buyantseva L, Brooks JP, Craig T.

Allergy Asthma Proc. 2016 Jan-Feb;37(1):76-9. doi: 10.2500/aap.2016.37.3896.

PMID:
26831851
26.

Investigation of denitrifying microbial communities within an agricultural drainage system fitted with low-grade weirs.

Baker BH, Kröger R, Brooks JP, Smith RK, Czarnecki JM.

Water Res. 2015 Dec 15;87:193-201. doi: 10.1016/j.watres.2015.09.028. Epub 2015 Sep 16.

PMID:
26414296
27.

Using broiler litter and swine manure lagoon effluent in sawdust-based swine mortality composts: Effects on nutrients, bacteria, and gaseous emissions.

McLaughlin MR, Brooks JP, Adeli A, Miles DM.

Sci Total Environ. 2015 Nov 1;532:265-80. doi: 10.1016/j.scitotenv.2015.05.119. Epub 2015 Jun 14.

PMID:
26081729
28.

The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies.

Brooks JP, Edwards DJ, Harwich MD Jr, Rivera MC, Fettweis JM, Serrano MG, Reris RA, Sheth NU, Huang B, Girerd P; Vaginal Microbiome Consortium, Strauss JF 3rd, Jefferson KK, Buck GA.

BMC Microbiol. 2015 Mar 21;15:66. doi: 10.1186/s12866-015-0351-6.

29.

Identification of a gene in Mycoplasma hominis associated with preterm birth and microbial burden in intraamniotic infection.

Allen-Daniels MJ, Serrano MG, Pflugner LP, Fettweis JM, Prestosa MA, Koparde VN, Brooks JP, Strauss JF 3rd, Romero R, Chaiworapongsa T, Eschenbach DA, Buck GA, Jefferson KK.

Am J Obstet Gynecol. 2015 Jun;212(6):779.e1-779.e13. doi: 10.1016/j.ajog.2015.01.032. Epub 2015 Jan 28.

30.

Ammonia and nitrous oxide emissions from a commercial broiler house.

Miles DM, Moore PA, Burns RT, Brooks JP.

J Environ Qual. 2014 Jul;43(4):1119-24. doi: 10.2134/jeq2013.09.0390.

PMID:
25603060
31.

Effects of bedding materials in applied poultry litter and immobilizing agents on runoff water, soil properties, and bermudagrass growth.

Sheng J, Adeli A, Brooks JP, McLaughlin MR, Read J.

J Environ Qual. 2014 Jan;43(1):290-6. doi: 10.2134/jeq2012.0070.

PMID:
25602562
32.

Internal medicine resident knowledge of transfusion medicine: results from the BEST-TEST international education needs assessment.

Haspel RL, Lin Y, Mallick R, Tinmouth A, Cid J, Eichler H, Lozano M, van de Watering L, Fisher PB, Ali A, Parks E; BEST-TEST Investigators.

Transfusion. 2015 Jun;55(6):1355-61. doi: 10.1111/trf.12968. Epub 2014 Dec 19.

PMID:
25522768
33.

The changing landscape of the vaginal microbiome.

Huang B, Fettweis JM, Brooks JP, Jefferson KK, Buck GA.

Clin Lab Med. 2014 Dec;34(4):747-61. doi: 10.1016/j.cll.2014.08.006. Epub 2014 Sep 15. Review.

34.

An emerging mycoplasma associated with trichomoniasis, vaginal infection and disease.

Fettweis JM, Serrano MG, Huang B, Brooks JP, Glascock AL, Sheth NU; Vaginal Microbiome Consortium, Strauss JF 3rd, Jefferson KK, Buck GA.

PLoS One. 2014 Oct 22;9(10):e110943. doi: 10.1371/journal.pone.0110943. eCollection 2014.

35.

The Integrative Human Microbiome Project: dynamic analysis of microbiome-host omics profiles during periods of human health and disease.

Integrative HMP (iHMP) Research Network Consortium.

Cell Host Microbe. 2014 Sep 10;16(3):276-89. doi: 10.1016/j.chom.2014.08.014.

36.

Proteomics-based metabolic modeling and characterization of the cellulolytic bacterium Thermobifida fusca.

Vanee N, Brooks JP, Spicer V, Shamshurin D, Krokhin O, Wilkins JA, Deng Y, Fong SS.

BMC Syst Biol. 2014 Aug 13;8:86. doi: 10.1186/s12918-014-0086-2.

37.

Differences in vaginal microbiome in African American women versus women of European ancestry.

Fettweis JM, Brooks JP, Serrano MG, Sheth NU, Girerd PH, Edwards DJ, Strauss JF, The Vaginal Microbiome Consortium, Jefferson KK, Buck GA.

Microbiology. 2014 Oct;160(Pt 10):2272-2282. doi: 10.1099/mic.0.081034-0. Epub 2014 Jul 29.

38.

Microbial ecology, bacterial pathogens, and antibiotic resistant genes in swine manure wastewater as influenced by three swine management systems.

Brooks JP, Adeli A, McLaughlin MR.

Water Res. 2014 Jun 15;57:96-103. doi: 10.1016/j.watres.2014.03.017. Epub 2014 Mar 19.

PMID:
24704907
39.

A new sampler for stratified lagoon chemical and microbiological assessments.

McLaughlin MR, Brooks JP, Adeli A.

Environ Monit Assess. 2014 Jul;186(7):4097-110. doi: 10.1007/s10661-014-3683-z. Epub 2014 Feb 20.

PMID:
24549945
40.

Stationary versus agitated storage of whole blood during acute normovolemic hemodilution.

Lu SY, Konig G, Yazer MH, Brooks JP, Chen YF, Jeong JH, Waters JH.

Anesth Analg. 2014 Feb;118(2):264-8. doi: 10.1213/ANE.0000000000000046.

41.

Decomposition of flux distributions into metabolic pathways.

Seref O, Brooks JP, Fong SS.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Jul-Aug;10(4):984-93. doi: 10.1109/TCBB.2013.115.

PMID:
24334391
42.

A Pure L1-norm Principal Component Analysis.

Brooks J, Dulá J, Boone E.

Comput Stat Data Anal. 2013 May 1;61:83-98.

43.

Broiler litter ammonia emissions near sidewalls, feeders, and waterers.

Miles DM, Brooks JP, McLaughlin MR, Rowe DE.

Poult Sci. 2013 Jul;92(7):1693-8. doi: 10.3382/ps.2012-02809.

PMID:
23776254
44.

Runoff quality from no-till cotton fertilized with broiler litter in subsurface bands.

Adeli A, Tewolde H, Shankle MW, Way TR, Brooks JP, McLaughlin MR.

J Environ Qual. 2013 Jan-Feb;42(1):284-91. doi: 10.2134/jeq2012.0358.

PMID:
23673763
45.

ABO rechecking should be performed in the same institution as computer crossmatch.

Brooks JP, Fletcher CH.

Transfusion. 2013 Feb;53(2):465-6. doi: 10.1111/trf.12013. No abstract available.

PMID:
23384104
46.

Species-level classification of the vaginal microbiome.

Fettweis JM, Serrano MG, Sheth NU, Mayer CM, Glascock AL, Brooks JP, Jefferson KK; Vaginal Microbiome Consortium (additional members), Buck GA.

BMC Genomics. 2012;13 Suppl 8:S17. doi: 10.1186/1471-2164-13-S8-S17. Epub 2012 Dec 17.

47.

Hypothesis testing and power calculations for taxonomic-based human microbiome data.

La Rosa PS, Brooks JP, Deych E, Boone EL, Edwards DJ, Wang Q, Sodergren E, Weinstock G, Shannon WD.

PLoS One. 2012;7(12):e52078. doi: 10.1371/journal.pone.0052078. Epub 2012 Dec 20.

48.

The effect of poultry manure application rate and AlCl(3) treatment on bacterial fecal indicators in runoff.

Brooks JP, Adeli A, McLaughlin MR, Miles DM.

J Water Health. 2012 Dec;10(4):619-28. doi: 10.2166/wh.2012.033.

PMID:
23165718
49.

Land application of manure and Class B biosolids: an occupational and public quantitative microbial risk assessment.

Brooks JP, McLaughlin MR, Gerba CP, Pepper IL.

J Environ Qual. 2012 Nov-Dec;41(6):2009-23. doi: 10.2134/jeq2011.0430.

PMID:
23128758
50.

The L1-norm best-fit hyperplane problem.

Brooks JP, Dulá JH.

Appl Math Lett. 2012 Jan 1;26(1):51-56. Epub 2012 Apr 10.

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